Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2856 and Dsui_2857 are separated by 101 nucleotides Dsui_2857 and Dsui_2858 overlap by 8 nucleotides
Dsui_2856: Dsui_2856 - methyl-accepting chemotaxis protein, at 3,044,547 to 3,046,568
_2856
Dsui_2857: Dsui_2857 - lipoprotein releasing system, ATP-binding protein, at 3,046,670 to 3,047,419
_2857
Dsui_2858: Dsui_2858 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 3,047,412 to 3,048,659
_2858
Position (kb)
3044
3045
3046
3047 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3043.547 kb on - strand at 3043.548 kb on - strand at 3043.553 kb on - strand at 3043.592 kb on - strand at 3043.593 kb on - strand at 3043.593 kb on - strand at 3043.593 kb on - strand at 3043.593 kb on - strand at 3043.603 kb on - strand at 3043.603 kb on - strand at 3043.603 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.653 kb on - strand at 3043.653 kb on - strand at 3043.653 kb on - strand at 3043.656 kb on - strand at 3043.659 kb on - strand at 3043.659 kb on - strand at 3043.660 kb on - strand at 3043.660 kb on - strand at 3043.664 kb on - strand at 3043.664 kb on - strand at 3043.664 kb on - strand at 3043.686 kb on - strand at 3043.687 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.714 kb on - strand at 3043.723 kb on - strand at 3043.723 kb on - strand at 3043.723 kb on - strand at 3043.723 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.747 kb on - strand at 3043.780 kb on - strand at 3043.806 kb on - strand at 3043.807 kb on + strand at 3043.910 kb on - strand at 3043.930 kb on + strand at 3043.945 kb on - strand at 3044.212 kb on - strand at 3044.313 kb on + strand at 3044.316 kb on - strand at 3044.331 kb on + strand at 3044.508 kb on - strand at 3044.539 kb on + strand at 3044.547 kb on - strand at 3044.592 kb on - strand at 3044.685 kb on - strand at 3044.750 kb on - strand, within Dsui_2856 at 3044.764 kb on + strand at 3044.782 kb on - strand, within Dsui_2856 at 3044.858 kb on + strand at 3045.138 kb on + strand, within Dsui_2856 at 3045.280 kb on - strand, within Dsui_2856 at 3045.593 kb on + strand, within Dsui_2856 at 3045.593 kb on + strand, within Dsui_2856 at 3045.601 kb on - strand, within Dsui_2856 at 3045.630 kb on - strand, within Dsui_2856 at 3045.660 kb on + strand, within Dsui_2856 at 3045.660 kb on + strand at 3045.706 kb on + strand, within Dsui_2856 at 3045.714 kb on - strand, within Dsui_2856 at 3045.714 kb on - strand, within Dsui_2856 at 3045.714 kb on - strand, within Dsui_2856 at 3045.783 kb on - strand, within Dsui_2856 at 3045.829 kb on - strand, within Dsui_2856 at 3046.044 kb on + strand at 3046.081 kb on - strand, within Dsui_2856 at 3046.091 kb on + strand, within Dsui_2856 at 3046.111 kb on - strand, within Dsui_2856 at 3046.117 kb on - strand, within Dsui_2856 at 3046.136 kb on - strand, within Dsui_2856 at 3046.302 kb on - strand, within Dsui_2856 at 3046.355 kb on + strand at 3046.363 kb on - strand, within Dsui_2856 at 3046.461 kb on + strand at 3046.518 kb on + strand at 3046.530 kb on + strand at 3046.538 kb on - strand at 3046.538 kb on - strand at 3046.585 kb on - strand at 3046.590 kb on - strand at 3046.590 kb on - strand at 3047.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,043,547 - -0.4 3,043,548 - +0.6 3,043,553 - -0.3 3,043,592 - +0.8 3,043,593 - +0.8 3,043,593 - +1.2 3,043,593 - +0.1 3,043,593 - -1.1 3,043,603 - +0.2 3,043,603 - +0.1 3,043,603 - +0.1 3,043,645 - -0.6 3,043,645 - -0.2 3,043,645 - +0.1 3,043,645 - -0.1 3,043,645 - -0.6 3,043,645 - +0.1 3,043,645 - -0.2 3,043,645 - -0.0 3,043,645 - -0.6 3,043,645 - +0.6 3,043,653 - +0.4 3,043,653 - +0.3 3,043,653 - -0.1 3,043,656 - +0.9 3,043,659 - +1.5 3,043,659 - -0.6 3,043,660 - -0.3 3,043,660 - -0.1 3,043,664 - -0.1 3,043,664 - -1.0 3,043,664 - +0.4 3,043,686 - -0.3 3,043,687 - -0.9 3,043,709 - -0.1 3,043,709 - -0.2 3,043,709 - -0.3 3,043,709 - -0.9 3,043,709 - -0.1 3,043,714 - -0.2 3,043,723 - -0.0 3,043,723 - +0.0 3,043,723 - -0.4 3,043,723 - +0.6 3,043,737 - +0.1 3,043,737 - +0.5 3,043,737 - +0.1 3,043,737 - +0.1 3,043,737 - -0.1 3,043,737 - -0.1 3,043,747 - -0.2 3,043,780 - +0.1 3,043,806 - +0.2 3,043,807 + -1.1 3,043,910 - +1.0 3,043,930 + -0.4 3,043,945 - +0.3 3,044,212 - -0.5 3,044,313 + -1.5 3,044,316 - +1.5 3,044,331 + +0.5 3,044,508 - +0.1 3,044,539 + -1.4 3,044,547 - +1.0 3,044,592 - -0.1 3,044,685 - -0.4 3,044,750 - Dsui_2856 0.10 +0.6 3,044,764 + -0.4 3,044,782 - Dsui_2856 0.12 -0.5 3,044,858 + +1.9 3,045,138 + Dsui_2856 0.29 +0.2 3,045,280 - Dsui_2856 0.36 -1.0 3,045,593 + Dsui_2856 0.52 -0.9 3,045,593 + Dsui_2856 0.52 -0.7 3,045,601 - Dsui_2856 0.52 -0.1 3,045,630 - Dsui_2856 0.54 +0.1 3,045,660 + Dsui_2856 0.55 -1.2 3,045,660 + +2.9 3,045,706 + Dsui_2856 0.57 +0.6 3,045,714 - Dsui_2856 0.58 -1.3 3,045,714 - Dsui_2856 0.58 -0.6 3,045,714 - Dsui_2856 0.58 -0.4 3,045,783 - Dsui_2856 0.61 +0.4 3,045,829 - Dsui_2856 0.63 -0.6 3,046,044 + +0.9 3,046,081 - Dsui_2856 0.76 +0.5 3,046,091 + Dsui_2856 0.76 -0.1 3,046,111 - Dsui_2856 0.77 -0.2 3,046,117 - Dsui_2856 0.78 +0.1 3,046,136 - Dsui_2856 0.79 +0.4 3,046,302 - Dsui_2856 0.87 +0.2 3,046,355 + +2.9 3,046,363 - Dsui_2856 0.90 +0.2 3,046,461 + +1.4 3,046,518 + +0.9 3,046,530 + -0.1 3,046,538 - -0.4 3,046,538 - +0.9 3,046,585 - +0.4 3,046,590 - +0.5 3,046,590 - +1.4 3,047,417 - +0.4
Or see this region's nucleotide sequence