Strain Fitness in Dechlorosoma suillum PS around Dsui_2856

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2856 and Dsui_2857 are separated by 101 nucleotidesDsui_2857 and Dsui_2858 overlap by 8 nucleotides Dsui_2856: Dsui_2856 - methyl-accepting chemotaxis protein, at 3,044,547 to 3,046,568 _2856 Dsui_2857: Dsui_2857 - lipoprotein releasing system, ATP-binding protein, at 3,046,670 to 3,047,419 _2857 Dsui_2858: Dsui_2858 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 3,047,412 to 3,048,659 _2858 Position (kb) 3044 3045 3046 3047Strain fitness (log2 ratio) -1 0 1 2 3at 3043.547 kb on - strandat 3043.548 kb on - strandat 3043.553 kb on - strandat 3043.592 kb on - strandat 3043.593 kb on - strandat 3043.593 kb on - strandat 3043.593 kb on - strandat 3043.593 kb on - strandat 3043.603 kb on - strandat 3043.603 kb on - strandat 3043.603 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.645 kb on - strandat 3043.653 kb on - strandat 3043.653 kb on - strandat 3043.653 kb on - strandat 3043.656 kb on - strandat 3043.659 kb on - strandat 3043.659 kb on - strandat 3043.660 kb on - strandat 3043.660 kb on - strandat 3043.664 kb on - strandat 3043.664 kb on - strandat 3043.664 kb on - strandat 3043.686 kb on - strandat 3043.687 kb on - strandat 3043.709 kb on - strandat 3043.709 kb on - strandat 3043.709 kb on - strandat 3043.709 kb on - strandat 3043.709 kb on - strandat 3043.714 kb on - strandat 3043.723 kb on - strandat 3043.723 kb on - strandat 3043.723 kb on - strandat 3043.723 kb on - strandat 3043.737 kb on - strandat 3043.737 kb on - strandat 3043.737 kb on - strandat 3043.737 kb on - strandat 3043.737 kb on - strandat 3043.737 kb on - strandat 3043.747 kb on - strandat 3043.780 kb on - strandat 3043.806 kb on - strandat 3043.807 kb on + strandat 3043.910 kb on - strandat 3043.930 kb on + strandat 3043.945 kb on - strandat 3044.212 kb on - strandat 3044.313 kb on + strandat 3044.316 kb on - strandat 3044.331 kb on + strandat 3044.508 kb on - strandat 3044.539 kb on + strandat 3044.547 kb on - strandat 3044.592 kb on - strandat 3044.685 kb on - strandat 3044.750 kb on - strand, within Dsui_2856at 3044.764 kb on + strandat 3044.782 kb on - strand, within Dsui_2856at 3044.858 kb on + strandat 3045.138 kb on + strand, within Dsui_2856at 3045.280 kb on - strand, within Dsui_2856at 3045.593 kb on + strand, within Dsui_2856at 3045.593 kb on + strand, within Dsui_2856at 3045.601 kb on - strand, within Dsui_2856at 3045.630 kb on - strand, within Dsui_2856at 3045.660 kb on + strand, within Dsui_2856at 3045.660 kb on + strandat 3045.706 kb on + strand, within Dsui_2856at 3045.714 kb on - strand, within Dsui_2856at 3045.714 kb on - strand, within Dsui_2856at 3045.714 kb on - strand, within Dsui_2856at 3045.783 kb on - strand, within Dsui_2856at 3045.829 kb on - strand, within Dsui_2856at 3046.044 kb on + strandat 3046.081 kb on - strand, within Dsui_2856at 3046.091 kb on + strand, within Dsui_2856at 3046.111 kb on - strand, within Dsui_2856at 3046.117 kb on - strand, within Dsui_2856at 3046.136 kb on - strand, within Dsui_2856at 3046.302 kb on - strand, within Dsui_2856at 3046.355 kb on + strandat 3046.363 kb on - strand, within Dsui_2856at 3046.461 kb on + strandat 3046.518 kb on + strandat 3046.530 kb on + strandat 3046.538 kb on - strandat 3046.538 kb on - strandat 3046.585 kb on - strandat 3046.590 kb on - strandat 3046.590 kb on - strandat 3047.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,043,547 - -0.4
3,043,548 - +0.6
3,043,553 - -0.3
3,043,592 - +0.8
3,043,593 - +0.8
3,043,593 - +1.2
3,043,593 - +0.1
3,043,593 - -1.1
3,043,603 - +0.2
3,043,603 - +0.1
3,043,603 - +0.1
3,043,645 - -0.6
3,043,645 - -0.2
3,043,645 - +0.1
3,043,645 - -0.1
3,043,645 - -0.6
3,043,645 - +0.1
3,043,645 - -0.2
3,043,645 - -0.0
3,043,645 - -0.6
3,043,645 - +0.6
3,043,653 - +0.4
3,043,653 - +0.3
3,043,653 - -0.1
3,043,656 - +0.9
3,043,659 - +1.5
3,043,659 - -0.6
3,043,660 - -0.3
3,043,660 - -0.1
3,043,664 - -0.1
3,043,664 - -1.0
3,043,664 - +0.4
3,043,686 - -0.3
3,043,687 - -0.9
3,043,709 - -0.1
3,043,709 - -0.2
3,043,709 - -0.3
3,043,709 - -0.9
3,043,709 - -0.1
3,043,714 - -0.2
3,043,723 - -0.0
3,043,723 - +0.0
3,043,723 - -0.4
3,043,723 - +0.6
3,043,737 - +0.1
3,043,737 - +0.5
3,043,737 - +0.1
3,043,737 - +0.1
3,043,737 - -0.1
3,043,737 - -0.1
3,043,747 - -0.2
3,043,780 - +0.1
3,043,806 - +0.2
3,043,807 + -1.1
3,043,910 - +1.0
3,043,930 + -0.4
3,043,945 - +0.3
3,044,212 - -0.5
3,044,313 + -1.5
3,044,316 - +1.5
3,044,331 + +0.5
3,044,508 - +0.1
3,044,539 + -1.4
3,044,547 - +1.0
3,044,592 - -0.1
3,044,685 - -0.4
3,044,750 - Dsui_2856 0.10 +0.6
3,044,764 + -0.4
3,044,782 - Dsui_2856 0.12 -0.5
3,044,858 + +1.9
3,045,138 + Dsui_2856 0.29 +0.2
3,045,280 - Dsui_2856 0.36 -1.0
3,045,593 + Dsui_2856 0.52 -0.9
3,045,593 + Dsui_2856 0.52 -0.7
3,045,601 - Dsui_2856 0.52 -0.1
3,045,630 - Dsui_2856 0.54 +0.1
3,045,660 + Dsui_2856 0.55 -1.2
3,045,660 + +2.9
3,045,706 + Dsui_2856 0.57 +0.6
3,045,714 - Dsui_2856 0.58 -1.3
3,045,714 - Dsui_2856 0.58 -0.6
3,045,714 - Dsui_2856 0.58 -0.4
3,045,783 - Dsui_2856 0.61 +0.4
3,045,829 - Dsui_2856 0.63 -0.6
3,046,044 + +0.9
3,046,081 - Dsui_2856 0.76 +0.5
3,046,091 + Dsui_2856 0.76 -0.1
3,046,111 - Dsui_2856 0.77 -0.2
3,046,117 - Dsui_2856 0.78 +0.1
3,046,136 - Dsui_2856 0.79 +0.4
3,046,302 - Dsui_2856 0.87 +0.2
3,046,355 + +2.9
3,046,363 - Dsui_2856 0.90 +0.2
3,046,461 + +1.4
3,046,518 + +0.9
3,046,530 + -0.1
3,046,538 - -0.4
3,046,538 - +0.9
3,046,585 - +0.4
3,046,590 - +0.5
3,046,590 - +1.4
3,047,417 - +0.4

Or see this region's nucleotide sequence