Strain Fitness in Dechlorosoma suillum PS around Dsui_2487

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2486 and Dsui_2487 are separated by 159 nucleotidesDsui_2487 and Dsui_2488 are separated by 7 nucleotidesDsui_2488 and Dsui_2489 are separated by 6 nucleotides Dsui_2486: Dsui_2486 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,634,939 to 2,635,901 _2486 Dsui_2487: Dsui_2487 - hypothetical protein, at 2,636,061 to 2,637,569 _2487 Dsui_2488: Dsui_2488 - Protein of unknown function (DUF3293), at 2,637,577 to 2,638,059 _2488 Dsui_2489: Dsui_2489 - polyhydroxyalkanoate depolymerase, intracellular, at 2,638,066 to 2,639,286 _2489 Position (kb) 2636 2637 2638Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2635.082 kb on + strand, within Dsui_2486at 2635.261 kb on + strand, within Dsui_2486at 2635.308 kb on - strand, within Dsui_2486at 2635.313 kb on - strand, within Dsui_2486at 2635.493 kb on + strand, within Dsui_2486at 2635.517 kb on + strand, within Dsui_2486at 2635.550 kb on - strand, within Dsui_2486at 2635.602 kb on + strand, within Dsui_2486at 2635.726 kb on - strand, within Dsui_2486at 2635.728 kb on - strand, within Dsui_2486at 2635.765 kb on - strand, within Dsui_2486at 2635.785 kb on - strand, within Dsui_2486at 2635.812 kb on - strandat 2635.869 kb on + strandat 2635.878 kb on - strandat 2635.894 kb on - strandat 2635.924 kb on - strandat 2636.102 kb on + strandat 2636.281 kb on + strand, within Dsui_2487at 2636.298 kb on + strand, within Dsui_2487at 2636.351 kb on + strand, within Dsui_2487at 2636.359 kb on - strand, within Dsui_2487at 2636.366 kb on + strand, within Dsui_2487at 2636.519 kb on + strand, within Dsui_2487at 2636.559 kb on + strand, within Dsui_2487at 2636.651 kb on + strand, within Dsui_2487at 2636.659 kb on - strandat 2636.683 kb on + strand, within Dsui_2487at 2636.683 kb on + strand, within Dsui_2487at 2636.728 kb on + strand, within Dsui_2487at 2637.061 kb on + strand, within Dsui_2487at 2637.069 kb on - strandat 2637.069 kb on - strandat 2637.071 kb on - strandat 2637.115 kb on - strand, within Dsui_2487at 2637.148 kb on - strandat 2637.148 kb on - strandat 2637.162 kb on + strand, within Dsui_2487at 2637.193 kb on - strandat 2637.348 kb on + strand, within Dsui_2487at 2637.348 kb on + strand, within Dsui_2487at 2637.450 kb on + strandat 2637.505 kb on - strandat 2637.538 kb on + strandat 2637.538 kb on + strandat 2637.559 kb on + strandat 2637.698 kb on + strand, within Dsui_2488at 2637.756 kb on + strand, within Dsui_2488at 2637.821 kb on + strand, within Dsui_2488at 2637.821 kb on + strand, within Dsui_2488at 2637.915 kb on - strand, within Dsui_2488at 2637.924 kb on + strand, within Dsui_2488at 2638.007 kb on + strand, within Dsui_2488at 2638.023 kb on - strandat 2638.064 kb on + strandat 2638.098 kb on + strandat 2638.098 kb on + strandat 2638.098 kb on + strandat 2638.106 kb on - strandat 2638.106 kb on - strandat 2638.106 kb on - strandat 2638.176 kb on - strandat 2638.195 kb on - strandat 2638.214 kb on - strand, within Dsui_2489at 2638.280 kb on - strandat 2638.393 kb on + strandat 2638.462 kb on - strand, within Dsui_2489at 2638.462 kb on - strand, within Dsui_2489

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,635,082 + Dsui_2486 0.15 +1.1
2,635,261 + Dsui_2486 0.33 +1.0
2,635,308 - Dsui_2486 0.38 +0.0
2,635,313 - Dsui_2486 0.39 -0.2
2,635,493 + Dsui_2486 0.58 -0.2
2,635,517 + Dsui_2486 0.60 -1.0
2,635,550 - Dsui_2486 0.63 +0.0
2,635,602 + Dsui_2486 0.69 +0.2
2,635,726 - Dsui_2486 0.82 -0.1
2,635,728 - Dsui_2486 0.82 -0.1
2,635,765 - Dsui_2486 0.86 -0.4
2,635,785 - Dsui_2486 0.88 -0.5
2,635,812 - -0.5
2,635,869 + -0.8
2,635,878 - -0.7
2,635,894 - -0.1
2,635,924 - +0.3
2,636,102 + -0.6
2,636,281 + Dsui_2487 0.15 -0.8
2,636,298 + Dsui_2487 0.16 -0.8
2,636,351 + Dsui_2487 0.19 -0.5
2,636,359 - Dsui_2487 0.20 -0.4
2,636,366 + Dsui_2487 0.20 -0.2
2,636,519 + Dsui_2487 0.30 -0.0
2,636,559 + Dsui_2487 0.33 -1.1
2,636,651 + Dsui_2487 0.39 -0.2
2,636,659 - +1.0
2,636,683 + Dsui_2487 0.41 -1.1
2,636,683 + Dsui_2487 0.41 -0.4
2,636,728 + Dsui_2487 0.44 +0.1
2,637,061 + Dsui_2487 0.66 +0.2
2,637,069 - +0.4
2,637,069 - +2.0
2,637,071 - +1.0
2,637,115 - Dsui_2487 0.70 +1.4
2,637,148 - +1.0
2,637,148 - +2.0
2,637,162 + Dsui_2487 0.73 -0.9
2,637,193 - +0.4
2,637,348 + Dsui_2487 0.85 -1.0
2,637,348 + Dsui_2487 0.85 +1.6
2,637,450 + +0.1
2,637,505 - -0.0
2,637,538 + -0.1
2,637,538 + -2.1
2,637,559 + -1.9
2,637,698 + Dsui_2488 0.25 +0.1
2,637,756 + Dsui_2488 0.37 -1.1
2,637,821 + Dsui_2488 0.51 -0.3
2,637,821 + Dsui_2488 0.51 +0.1
2,637,915 - Dsui_2488 0.70 -1.0
2,637,924 + Dsui_2488 0.72 -0.5
2,638,007 + Dsui_2488 0.89 -0.1
2,638,023 - +0.4
2,638,064 + +0.6
2,638,098 + -0.4
2,638,098 + +0.4
2,638,098 + +0.3
2,638,106 - +0.4
2,638,106 - -0.8
2,638,106 - -0.8
2,638,176 - +1.0
2,638,195 - +3.0
2,638,214 - Dsui_2489 0.12 +0.0
2,638,280 - +1.2
2,638,393 + +1.6
2,638,462 - Dsui_2489 0.32 +0.0
2,638,462 - Dsui_2489 0.32 -0.3

Or see this region's nucleotide sequence