Strain Fitness in Dechlorosoma suillum PS around Dsui_2395

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2394 and Dsui_2395 are separated by 19 nucleotidesDsui_2395 and Dsui_2396 overlap by 4 nucleotidesDsui_2396 and Dsui_2397 are separated by 112 nucleotides Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775 _2394 Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112 _2395 Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951 _2396 Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780 _2397 Position (kb) 2548 2549 2550Strain fitness (log2 ratio) -1 0 1 2at 2547.865 kb on - strandat 2547.882 kb on + strand, within Dsui_2394at 2547.943 kb on - strand, within Dsui_2394at 2548.223 kb on + strand, within Dsui_2394at 2548.341 kb on + strand, within Dsui_2394at 2548.409 kb on + strand, within Dsui_2394at 2548.486 kb on - strandat 2548.650 kb on - strandat 2548.712 kb on + strandat 2548.747 kb on - strandat 2548.873 kb on + strand, within Dsui_2395at 2549.057 kb on + strand, within Dsui_2395at 2549.060 kb on + strand, within Dsui_2395at 2549.068 kb on - strandat 2549.068 kb on - strand, within Dsui_2395at 2549.068 kb on - strandat 2549.143 kb on - strandat 2549.159 kb on - strandat 2549.210 kb on + strand, within Dsui_2396at 2549.250 kb on - strandat 2549.276 kb on - strandat 2549.335 kb on + strand, within Dsui_2396at 2549.339 kb on + strand, within Dsui_2396at 2549.347 kb on - strandat 2549.395 kb on + strand, within Dsui_2396at 2549.545 kb on + strand, within Dsui_2396at 2549.586 kb on + strand, within Dsui_2396at 2549.629 kb on - strandat 2549.646 kb on + strand, within Dsui_2396at 2549.654 kb on - strand, within Dsui_2396at 2549.669 kb on - strand, within Dsui_2396at 2549.794 kb on + strand, within Dsui_2396at 2549.800 kb on + strand, within Dsui_2396at 2549.853 kb on + strand, within Dsui_2396at 2549.915 kb on - strandat 2549.938 kb on + strandat 2550.036 kb on + strandat 2550.044 kb on + strandat 2550.049 kb on + strandat 2550.049 kb on + strandat 2550.059 kb on + strandat 2550.066 kb on + strandat 2550.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,547,865 - +1.0
2,547,882 + Dsui_2394 0.70 -0.5
2,547,943 - Dsui_2394 0.72 +1.0
2,548,223 + Dsui_2394 0.81 +1.0
2,548,341 + Dsui_2394 0.85 -0.1
2,548,409 + Dsui_2394 0.88 -0.6
2,548,486 - -1.2
2,548,650 - +0.4
2,548,712 + -0.0
2,548,747 - -0.0
2,548,873 + Dsui_2395 0.25 +0.7
2,549,057 + Dsui_2395 0.82 +0.1
2,549,060 + Dsui_2395 0.83 +0.4
2,549,068 - +2.0
2,549,068 - Dsui_2395 0.86 +1.4
2,549,068 - +2.6
2,549,143 - +1.0
2,549,159 - -0.0
2,549,210 + Dsui_2396 0.12 +0.6
2,549,250 - -0.0
2,549,276 - +0.4
2,549,335 + Dsui_2396 0.27 -0.0
2,549,339 + Dsui_2396 0.27 +0.5
2,549,347 - +1.0
2,549,395 + Dsui_2396 0.34 +0.3
2,549,545 + Dsui_2396 0.52 -1.0
2,549,586 + Dsui_2396 0.57 -0.2
2,549,629 - -0.8
2,549,646 + Dsui_2396 0.64 -0.0
2,549,654 - Dsui_2396 0.65 +0.8
2,549,669 - Dsui_2396 0.66 +1.8
2,549,794 + Dsui_2396 0.81 -0.3
2,549,800 + Dsui_2396 0.82 -0.6
2,549,853 + Dsui_2396 0.88 -0.8
2,549,915 - +2.6
2,549,938 + +0.2
2,550,036 + -0.7
2,550,044 + -0.3
2,550,049 + +0.1
2,550,049 + -1.1
2,550,059 + +0.3
2,550,066 + -0.1
2,550,093 + +0.5

Or see this region's nucleotide sequence