Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2394 and Dsui_2395 are separated by 19 nucleotides Dsui_2395 and Dsui_2396 overlap by 4 nucleotides Dsui_2396 and Dsui_2397 are separated by 112 nucleotides
Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775
_2394
Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112
_2395
Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951
_2396
Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780
_2397
Position (kb)
2548
2549
2550 Strain fitness (log2 ratio)
-1
0
1
2 at 2547.865 kb on - strand at 2547.882 kb on + strand, within Dsui_2394 at 2547.943 kb on - strand, within Dsui_2394 at 2548.223 kb on + strand, within Dsui_2394 at 2548.341 kb on + strand, within Dsui_2394 at 2548.409 kb on + strand, within Dsui_2394 at 2548.486 kb on - strand at 2548.650 kb on - strand at 2548.712 kb on + strand at 2548.747 kb on - strand at 2548.873 kb on + strand, within Dsui_2395 at 2549.057 kb on + strand, within Dsui_2395 at 2549.060 kb on + strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.068 kb on - strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.143 kb on - strand at 2549.159 kb on - strand at 2549.210 kb on + strand, within Dsui_2396 at 2549.250 kb on - strand at 2549.276 kb on - strand at 2549.335 kb on + strand, within Dsui_2396 at 2549.339 kb on + strand, within Dsui_2396 at 2549.347 kb on - strand at 2549.395 kb on + strand, within Dsui_2396 at 2549.545 kb on + strand, within Dsui_2396 at 2549.586 kb on + strand, within Dsui_2396 at 2549.629 kb on - strand at 2549.646 kb on + strand, within Dsui_2396 at 2549.654 kb on - strand, within Dsui_2396 at 2549.669 kb on - strand, within Dsui_2396 at 2549.794 kb on + strand, within Dsui_2396 at 2549.800 kb on + strand, within Dsui_2396 at 2549.853 kb on + strand, within Dsui_2396 at 2549.915 kb on - strand at 2549.938 kb on + strand at 2550.036 kb on + strand at 2550.044 kb on + strand at 2550.049 kb on + strand at 2550.049 kb on + strand at 2550.059 kb on + strand at 2550.066 kb on + strand at 2550.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,547,865 - +1.0 2,547,882 + Dsui_2394 0.70 -0.5 2,547,943 - Dsui_2394 0.72 +1.0 2,548,223 + Dsui_2394 0.81 +1.0 2,548,341 + Dsui_2394 0.85 -0.1 2,548,409 + Dsui_2394 0.88 -0.6 2,548,486 - -1.2 2,548,650 - +0.4 2,548,712 + -0.0 2,548,747 - -0.0 2,548,873 + Dsui_2395 0.25 +0.7 2,549,057 + Dsui_2395 0.82 +0.1 2,549,060 + Dsui_2395 0.83 +0.4 2,549,068 - +2.0 2,549,068 - Dsui_2395 0.86 +1.4 2,549,068 - +2.6 2,549,143 - +1.0 2,549,159 - -0.0 2,549,210 + Dsui_2396 0.12 +0.6 2,549,250 - -0.0 2,549,276 - +0.4 2,549,335 + Dsui_2396 0.27 -0.0 2,549,339 + Dsui_2396 0.27 +0.5 2,549,347 - +1.0 2,549,395 + Dsui_2396 0.34 +0.3 2,549,545 + Dsui_2396 0.52 -1.0 2,549,586 + Dsui_2396 0.57 -0.2 2,549,629 - -0.8 2,549,646 + Dsui_2396 0.64 -0.0 2,549,654 - Dsui_2396 0.65 +0.8 2,549,669 - Dsui_2396 0.66 +1.8 2,549,794 + Dsui_2396 0.81 -0.3 2,549,800 + Dsui_2396 0.82 -0.6 2,549,853 + Dsui_2396 0.88 -0.8 2,549,915 - +2.6 2,549,938 + +0.2 2,550,036 + -0.7 2,550,044 + -0.3 2,550,049 + +0.1 2,550,049 + -1.1 2,550,059 + +0.3 2,550,066 + -0.1 2,550,093 + +0.5
Or see this region's nucleotide sequence