Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2182 and Dsui_2183 are separated by 240 nucleotides Dsui_2183 and Dsui_2184 are separated by 114 nucleotides Dsui_2184 and Dsui_2185 are separated by 71 nucleotides
Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506
_2182
Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619
_2183
Dsui_2184: Dsui_2184 - hypothetical protein, at 2,319,734 to 2,320,282
_2184
Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926
_2185
Position (kb)
2318
2319
2320 Strain fitness (log2 ratio)
-1
0
1
2 at 2317.957 kb on - strand at 2318.032 kb on + strand, within Dsui_2182 at 2318.042 kb on - strand at 2318.084 kb on - strand at 2318.156 kb on + strand, within Dsui_2182 at 2318.284 kb on - strand at 2318.595 kb on + strand at 2318.605 kb on + strand at 2318.768 kb on + strand at 2318.823 kb on + strand at 2318.948 kb on + strand at 2319.343 kb on + strand at 2319.369 kb on - strand, within Dsui_2183 at 2319.402 kb on - strand, within Dsui_2183 at 2319.564 kb on - strand at 2319.874 kb on + strand at 2319.977 kb on + strand, within Dsui_2184 at 2320.260 kb on - strand at 2320.299 kb on - strand at 2320.402 kb on + strand at 2320.425 kb on + strand, within Dsui_2185 at 2320.477 kb on - strand at 2320.619 kb on - strand, within Dsui_2185
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,317,957 - +2.0 2,318,032 + Dsui_2182 0.64 +0.5 2,318,042 - +0.5 2,318,084 - +1.0 2,318,156 + Dsui_2182 0.73 +0.7 2,318,284 - +0.0 2,318,595 + -0.4 2,318,605 + -1.1 2,318,768 + +0.0 2,318,823 + +1.3 2,318,948 + +0.0 2,319,343 + +1.0 2,319,369 - Dsui_2183 0.71 +0.6 2,319,402 - Dsui_2183 0.75 +0.1 2,319,564 - +0.6 2,319,874 + +1.0 2,319,977 + Dsui_2184 0.44 +0.4 2,320,260 - +0.2 2,320,299 - +0.1 2,320,402 + +1.0 2,320,425 + Dsui_2185 0.12 +1.4 2,320,477 - +2.6 2,320,619 - Dsui_2185 0.46 -0.8
Or see this region's nucleotide sequence