Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1996 and Dsui_1997 are separated by 22 nucleotides Dsui_1997 and Dsui_1998 are separated by 77 nucleotides Dsui_1998 and Dsui_1999 are separated by 11 nucleotides
Dsui_1996: Dsui_1996 - PhoH family protein, at 2,103,673 to 2,105,115
_1996
Dsui_1997: Dsui_1997 - Peroxiredoxin, at 2,105,138 to 2,105,611
_1997
Dsui_1998: Dsui_1998 - glutamate racemase, at 2,105,689 to 2,106,474
_1998
Dsui_1999: Dsui_1999 - putative translation initiation inhibitor, yjgF family, at 2,106,486 to 2,106,830
_1999
Position (kb)
2105
2106 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2104.145 kb on - strand, within Dsui_1996 at 2104.155 kb on - strand, within Dsui_1996 at 2104.224 kb on - strand, within Dsui_1996 at 2104.226 kb on + strand, within Dsui_1996 at 2104.236 kb on + strand, within Dsui_1996 at 2104.341 kb on + strand, within Dsui_1996 at 2104.349 kb on - strand, within Dsui_1996 at 2104.395 kb on + strand, within Dsui_1996 at 2104.407 kb on - strand, within Dsui_1996 at 2104.446 kb on + strand at 2104.514 kb on - strand, within Dsui_1996 at 2104.516 kb on - strand, within Dsui_1996 at 2104.562 kb on + strand, within Dsui_1996 at 2104.562 kb on + strand at 2104.562 kb on + strand at 2104.562 kb on + strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.628 kb on - strand, within Dsui_1996 at 2104.636 kb on - strand, within Dsui_1996 at 2104.727 kb on - strand, within Dsui_1996 at 2104.742 kb on - strand, within Dsui_1996 at 2104.742 kb on - strand, within Dsui_1996 at 2104.751 kb on + strand, within Dsui_1996 at 2104.751 kb on + strand, within Dsui_1996 at 2104.759 kb on - strand, within Dsui_1996 at 2104.759 kb on - strand, within Dsui_1996 at 2104.872 kb on - strand, within Dsui_1996 at 2104.875 kb on + strand at 2104.881 kb on + strand, within Dsui_1996 at 2104.881 kb on + strand, within Dsui_1996 at 2104.881 kb on + strand, within Dsui_1996 at 2104.889 kb on - strand, within Dsui_1996 at 2104.894 kb on - strand, within Dsui_1996 at 2104.956 kb on - strand, within Dsui_1996 at 2105.010 kb on - strand at 2105.090 kb on - strand at 2105.144 kb on - strand at 2105.144 kb on - strand at 2105.144 kb on - strand at 2105.248 kb on + strand at 2105.253 kb on + strand at 2105.253 kb on + strand at 2105.255 kb on + strand at 2105.261 kb on - strand, within Dsui_1997 at 2105.261 kb on - strand, within Dsui_1997 at 2105.314 kb on - strand, within Dsui_1997 at 2105.396 kb on - strand at 2105.541 kb on - strand, within Dsui_1997 at 2105.611 kb on + strand at 2105.661 kb on + strand at 2105.661 kb on + strand at 2105.687 kb on + strand at 2105.687 kb on + strand at 2105.687 kb on + strand at 2105.695 kb on - strand at 2105.706 kb on - strand at 2106.499 kb on + strand at 2106.515 kb on - strand at 2106.517 kb on - strand at 2106.523 kb on - strand, within Dsui_1999 at 2106.588 kb on + strand, within Dsui_1999 at 2106.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,104,145 - Dsui_1996 0.33 +0.1 2,104,155 - Dsui_1996 0.33 +0.4 2,104,224 - Dsui_1996 0.38 -1.1 2,104,226 + Dsui_1996 0.38 -0.1 2,104,236 + Dsui_1996 0.39 -0.5 2,104,341 + Dsui_1996 0.46 -0.5 2,104,349 - Dsui_1996 0.47 +0.6 2,104,395 + Dsui_1996 0.50 -0.7 2,104,407 - Dsui_1996 0.51 +0.7 2,104,446 + +1.5 2,104,514 - Dsui_1996 0.58 -0.5 2,104,516 - Dsui_1996 0.58 +0.4 2,104,562 + Dsui_1996 0.62 +0.2 2,104,562 + +0.5 2,104,562 + +0.1 2,104,562 + Dsui_1996 0.62 +0.1 2,104,570 - Dsui_1996 0.62 -0.6 2,104,570 - Dsui_1996 0.62 -0.3 2,104,570 - Dsui_1996 0.62 +0.0 2,104,628 - Dsui_1996 0.66 -1.8 2,104,636 - Dsui_1996 0.67 +1.3 2,104,727 - Dsui_1996 0.73 +0.6 2,104,742 - Dsui_1996 0.74 -1.7 2,104,742 - Dsui_1996 0.74 +0.1 2,104,751 + Dsui_1996 0.75 -0.1 2,104,751 + Dsui_1996 0.75 +0.5 2,104,759 - Dsui_1996 0.75 -0.3 2,104,759 - Dsui_1996 0.75 +0.2 2,104,872 - Dsui_1996 0.83 -0.3 2,104,875 + +0.2 2,104,881 + Dsui_1996 0.84 -0.2 2,104,881 + Dsui_1996 0.84 -1.5 2,104,881 + Dsui_1996 0.84 +0.9 2,104,889 - Dsui_1996 0.84 -0.1 2,104,894 - Dsui_1996 0.85 +0.1 2,104,956 - Dsui_1996 0.89 -0.1 2,105,010 - -0.1 2,105,090 - +0.9 2,105,144 - +0.9 2,105,144 - +0.4 2,105,144 - -0.1 2,105,248 + +0.1 2,105,253 + +1.5 2,105,253 + +0.5 2,105,255 + +0.5 2,105,261 - Dsui_1997 0.26 -0.0 2,105,261 - Dsui_1997 0.26 -0.8 2,105,314 - Dsui_1997 0.37 -0.6 2,105,396 - +1.1 2,105,541 - Dsui_1997 0.85 -0.9 2,105,611 + +0.1 2,105,661 + +1.1 2,105,661 + +0.5 2,105,687 + +1.1 2,105,687 + +0.5 2,105,687 + -0.3 2,105,695 - -0.1 2,105,706 - -1.3 2,106,499 + -0.4 2,106,515 - -0.7 2,106,517 - -0.9 2,106,523 - Dsui_1999 0.11 -0.8 2,106,588 + Dsui_1999 0.30 +0.4 2,106,608 - +2.6
Or see this region's nucleotide sequence