Strain Fitness in Dechlorosoma suillum PS around Dsui_1997

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1996 and Dsui_1997 are separated by 22 nucleotidesDsui_1997 and Dsui_1998 are separated by 77 nucleotidesDsui_1998 and Dsui_1999 are separated by 11 nucleotides Dsui_1996: Dsui_1996 - PhoH family protein, at 2,103,673 to 2,105,115 _1996 Dsui_1997: Dsui_1997 - Peroxiredoxin, at 2,105,138 to 2,105,611 _1997 Dsui_1998: Dsui_1998 - glutamate racemase, at 2,105,689 to 2,106,474 _1998 Dsui_1999: Dsui_1999 - putative translation initiation inhibitor, yjgF family, at 2,106,486 to 2,106,830 _1999 Position (kb) 2105 2106Strain fitness (log2 ratio) -2 -1 0 1 2at 2104.145 kb on - strand, within Dsui_1996at 2104.155 kb on - strand, within Dsui_1996at 2104.224 kb on - strand, within Dsui_1996at 2104.226 kb on + strand, within Dsui_1996at 2104.236 kb on + strand, within Dsui_1996at 2104.341 kb on + strand, within Dsui_1996at 2104.349 kb on - strand, within Dsui_1996at 2104.395 kb on + strand, within Dsui_1996at 2104.407 kb on - strand, within Dsui_1996at 2104.446 kb on + strandat 2104.514 kb on - strand, within Dsui_1996at 2104.516 kb on - strand, within Dsui_1996at 2104.562 kb on + strand, within Dsui_1996at 2104.562 kb on + strandat 2104.562 kb on + strandat 2104.562 kb on + strand, within Dsui_1996at 2104.570 kb on - strand, within Dsui_1996at 2104.570 kb on - strand, within Dsui_1996at 2104.570 kb on - strand, within Dsui_1996at 2104.628 kb on - strand, within Dsui_1996at 2104.636 kb on - strand, within Dsui_1996at 2104.727 kb on - strand, within Dsui_1996at 2104.742 kb on - strand, within Dsui_1996at 2104.742 kb on - strand, within Dsui_1996at 2104.751 kb on + strand, within Dsui_1996at 2104.751 kb on + strand, within Dsui_1996at 2104.759 kb on - strand, within Dsui_1996at 2104.759 kb on - strand, within Dsui_1996at 2104.872 kb on - strand, within Dsui_1996at 2104.875 kb on + strandat 2104.881 kb on + strand, within Dsui_1996at 2104.881 kb on + strand, within Dsui_1996at 2104.881 kb on + strand, within Dsui_1996at 2104.889 kb on - strand, within Dsui_1996at 2104.894 kb on - strand, within Dsui_1996at 2104.956 kb on - strand, within Dsui_1996at 2105.010 kb on - strandat 2105.090 kb on - strandat 2105.144 kb on - strandat 2105.144 kb on - strandat 2105.144 kb on - strandat 2105.248 kb on + strandat 2105.253 kb on + strandat 2105.253 kb on + strandat 2105.255 kb on + strandat 2105.261 kb on - strand, within Dsui_1997at 2105.261 kb on - strand, within Dsui_1997at 2105.314 kb on - strand, within Dsui_1997at 2105.396 kb on - strandat 2105.541 kb on - strand, within Dsui_1997at 2105.611 kb on + strandat 2105.661 kb on + strandat 2105.661 kb on + strandat 2105.687 kb on + strandat 2105.687 kb on + strandat 2105.687 kb on + strandat 2105.695 kb on - strandat 2105.706 kb on - strandat 2106.499 kb on + strandat 2106.515 kb on - strandat 2106.517 kb on - strandat 2106.523 kb on - strand, within Dsui_1999at 2106.588 kb on + strand, within Dsui_1999at 2106.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,104,145 - Dsui_1996 0.33 +0.1
2,104,155 - Dsui_1996 0.33 +0.4
2,104,224 - Dsui_1996 0.38 -1.1
2,104,226 + Dsui_1996 0.38 -0.1
2,104,236 + Dsui_1996 0.39 -0.5
2,104,341 + Dsui_1996 0.46 -0.5
2,104,349 - Dsui_1996 0.47 +0.6
2,104,395 + Dsui_1996 0.50 -0.7
2,104,407 - Dsui_1996 0.51 +0.7
2,104,446 + +1.5
2,104,514 - Dsui_1996 0.58 -0.5
2,104,516 - Dsui_1996 0.58 +0.4
2,104,562 + Dsui_1996 0.62 +0.2
2,104,562 + +0.5
2,104,562 + +0.1
2,104,562 + Dsui_1996 0.62 +0.1
2,104,570 - Dsui_1996 0.62 -0.6
2,104,570 - Dsui_1996 0.62 -0.3
2,104,570 - Dsui_1996 0.62 +0.0
2,104,628 - Dsui_1996 0.66 -1.8
2,104,636 - Dsui_1996 0.67 +1.3
2,104,727 - Dsui_1996 0.73 +0.6
2,104,742 - Dsui_1996 0.74 -1.7
2,104,742 - Dsui_1996 0.74 +0.1
2,104,751 + Dsui_1996 0.75 -0.1
2,104,751 + Dsui_1996 0.75 +0.5
2,104,759 - Dsui_1996 0.75 -0.3
2,104,759 - Dsui_1996 0.75 +0.2
2,104,872 - Dsui_1996 0.83 -0.3
2,104,875 + +0.2
2,104,881 + Dsui_1996 0.84 -0.2
2,104,881 + Dsui_1996 0.84 -1.5
2,104,881 + Dsui_1996 0.84 +0.9
2,104,889 - Dsui_1996 0.84 -0.1
2,104,894 - Dsui_1996 0.85 +0.1
2,104,956 - Dsui_1996 0.89 -0.1
2,105,010 - -0.1
2,105,090 - +0.9
2,105,144 - +0.9
2,105,144 - +0.4
2,105,144 - -0.1
2,105,248 + +0.1
2,105,253 + +1.5
2,105,253 + +0.5
2,105,255 + +0.5
2,105,261 - Dsui_1997 0.26 -0.0
2,105,261 - Dsui_1997 0.26 -0.8
2,105,314 - Dsui_1997 0.37 -0.6
2,105,396 - +1.1
2,105,541 - Dsui_1997 0.85 -0.9
2,105,611 + +0.1
2,105,661 + +1.1
2,105,661 + +0.5
2,105,687 + +1.1
2,105,687 + +0.5
2,105,687 + -0.3
2,105,695 - -0.1
2,105,706 - -1.3
2,106,499 + -0.4
2,106,515 - -0.7
2,106,517 - -0.9
2,106,523 - Dsui_1999 0.11 -0.8
2,106,588 + Dsui_1999 0.30 +0.4
2,106,608 - +2.6

Or see this region's nucleotide sequence