Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1932 and Dsui_1933 are separated by 487 nucleotides Dsui_1933 and Dsui_1934 overlap by 8 nucleotides Dsui_1934 and Dsui_1935 are separated by 79 nucleotides
Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491
_1932
Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638
_1933
Dsui_1934: Dsui_1934 - ubiquinone biosynthesis O-methyltransferase, at 2,043,631 to 2,044,329
_1934
Dsui_1935: Dsui_1935 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,044,409 to 2,045,047
_1935
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-2
-1
0
1 at 2042.187 kb on - strand, within Dsui_1932 at 2042.214 kb on + strand, within Dsui_1932 at 2042.214 kb on + strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.502 kb on - strand at 2042.512 kb on - strand at 2042.545 kb on - strand at 2042.570 kb on + strand at 2042.570 kb on + strand at 2042.578 kb on - strand at 2042.893 kb on - strand at 2042.895 kb on + strand at 2042.928 kb on - strand at 2042.935 kb on - strand at 2042.947 kb on + strand at 2043.048 kb on - strand, within Dsui_1933 at 2043.061 kb on + strand, within Dsui_1933 at 2043.103 kb on + strand at 2043.146 kb on + strand at 2043.146 kb on + strand, within Dsui_1933 at 2043.174 kb on - strand, within Dsui_1933 at 2043.256 kb on + strand, within Dsui_1933 at 2043.380 kb on + strand, within Dsui_1933 at 2043.388 kb on - strand, within Dsui_1933 at 2043.406 kb on + strand, within Dsui_1933 at 2043.419 kb on - strand, within Dsui_1933 at 2043.444 kb on + strand, within Dsui_1933 at 2043.504 kb on + strand, within Dsui_1933 at 2043.505 kb on + strand, within Dsui_1933 at 2043.520 kb on - strand, within Dsui_1933 at 2043.522 kb on + strand, within Dsui_1933 at 2043.530 kb on - strand, within Dsui_1933 at 2043.572 kb on - strand, within Dsui_1933 at 2043.574 kb on + strand at 2043.618 kb on + strand at 2043.647 kb on + strand at 2043.647 kb on + strand at 2044.348 kb on - strand at 2044.355 kb on - strand at 2044.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,042,187 - Dsui_1932 0.39 -0.7 2,042,214 + Dsui_1932 0.45 -0.1 2,042,214 + Dsui_1932 0.45 -1.0 2,042,406 - Dsui_1932 0.83 -0.4 2,042,406 - Dsui_1932 0.83 -1.0 2,042,406 - Dsui_1932 0.83 -1.8 2,042,502 - -1.6 2,042,512 - -0.3 2,042,545 - -0.7 2,042,570 + +1.3 2,042,570 + -0.4 2,042,578 - -0.4 2,042,893 - -0.4 2,042,895 + +0.6 2,042,928 - +0.1 2,042,935 - -0.4 2,042,947 + -0.8 2,043,048 - Dsui_1933 0.10 +0.0 2,043,061 + Dsui_1933 0.12 -0.6 2,043,103 + +0.4 2,043,146 + +1.4 2,043,146 + Dsui_1933 0.25 -0.3 2,043,174 - Dsui_1933 0.30 -0.4 2,043,256 + Dsui_1933 0.42 +1.0 2,043,380 + Dsui_1933 0.61 +0.0 2,043,388 - Dsui_1933 0.62 +0.6 2,043,406 + Dsui_1933 0.65 +0.1 2,043,419 - Dsui_1933 0.67 -0.2 2,043,444 + Dsui_1933 0.70 -0.1 2,043,504 + Dsui_1933 0.80 +0.8 2,043,505 + Dsui_1933 0.80 -0.1 2,043,520 - Dsui_1933 0.82 -0.0 2,043,522 + Dsui_1933 0.82 -0.8 2,043,530 - Dsui_1933 0.83 +0.5 2,043,572 - Dsui_1933 0.90 +0.7 2,043,574 + +1.4 2,043,618 + -0.2 2,043,647 + -0.2 2,043,647 + +0.1 2,044,348 - +0.1 2,044,355 - -0.3 2,044,370 - -0.5
Or see this region's nucleotide sequence