Strain Fitness in Dechlorosoma suillum PS around Dsui_0812

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0810 and Dsui_0811 overlap by 4 nucleotidesDsui_0811 and Dsui_0812 overlap by 41 nucleotidesDsui_0812 and Dsui_0813 are separated by 173 nucleotides Dsui_0810: Dsui_0810 - signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 820,666 to 822,786 _0810 Dsui_0811: Dsui_0811 - hypothetical protein, at 822,783 to 823,391 _0811 Dsui_0812: Dsui_0812 - ribosomal RNA small subunit methyltransferase RsmB, at 823,351 to 824,688 _0812 Dsui_0813: Dsui_0813 - cation diffusion facilitator family transporter, at 824,862 to 825,764 _0813 Position (kb) 823 824 825Strain fitness (log2 ratio) -2 -1 0 1 2at 822.368 kb on - strand, within Dsui_0810at 822.408 kb on + strand, within Dsui_0810at 822.686 kb on + strandat 822.686 kb on + strandat 822.694 kb on - strandat 822.759 kb on - strandat 822.795 kb on + strandat 822.806 kb on + strandat 822.870 kb on + strand, within Dsui_0811at 822.892 kb on + strand, within Dsui_0811at 822.892 kb on + strand, within Dsui_0811at 822.902 kb on + strand, within Dsui_0811at 822.911 kb on + strand, within Dsui_0811at 822.952 kb on + strand, within Dsui_0811at 822.952 kb on + strand, within Dsui_0811at 822.970 kb on - strand, within Dsui_0811at 822.980 kb on - strand, within Dsui_0811at 823.027 kb on - strand, within Dsui_0811at 823.054 kb on + strand, within Dsui_0811at 823.065 kb on + strand, within Dsui_0811at 823.189 kb on + strand, within Dsui_0811at 823.255 kb on - strand, within Dsui_0811at 823.256 kb on - strand, within Dsui_0811at 823.282 kb on - strand, within Dsui_0811at 823.282 kb on - strand, within Dsui_0811at 823.297 kb on - strand, within Dsui_0811at 823.356 kb on - strandat 823.379 kb on - strandat 823.379 kb on - strandat 823.379 kb on - strandat 823.392 kb on - strandat 823.400 kb on - strandat 823.403 kb on + strandat 823.467 kb on + strandat 823.479 kb on + strandat 823.479 kb on + strandat 823.487 kb on - strand, within Dsui_0812at 823.522 kb on + strand, within Dsui_0812at 823.525 kb on - strand, within Dsui_0812at 823.539 kb on + strand, within Dsui_0812at 823.578 kb on - strand, within Dsui_0812at 823.685 kb on - strand, within Dsui_0812at 823.706 kb on - strand, within Dsui_0812at 823.708 kb on - strand, within Dsui_0812at 823.723 kb on + strand, within Dsui_0812at 823.752 kb on + strand, within Dsui_0812at 823.752 kb on + strand, within Dsui_0812at 823.818 kb on + strand, within Dsui_0812at 823.826 kb on - strand, within Dsui_0812at 823.827 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.841 kb on - strand, within Dsui_0812at 823.926 kb on + strand, within Dsui_0812at 823.931 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 824.009 kb on - strand, within Dsui_0812at 824.017 kb on + strand, within Dsui_0812at 824.023 kb on + strand, within Dsui_0812at 824.025 kb on - strand, within Dsui_0812at 824.067 kb on + strand, within Dsui_0812at 824.095 kb on - strand, within Dsui_0812at 824.185 kb on + strand, within Dsui_0812at 824.222 kb on + strand, within Dsui_0812at 824.230 kb on - strand, within Dsui_0812at 824.270 kb on + strand, within Dsui_0812at 824.273 kb on - strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.342 kb on - strand, within Dsui_0812at 824.344 kb on + strand, within Dsui_0812at 824.344 kb on + strand, within Dsui_0812at 824.352 kb on - strand, within Dsui_0812at 824.357 kb on - strand, within Dsui_0812at 824.357 kb on - strand, within Dsui_0812at 824.376 kb on - strand, within Dsui_0812at 824.386 kb on - strand, within Dsui_0812at 824.392 kb on + strand, within Dsui_0812at 824.410 kb on + strand, within Dsui_0812at 824.413 kb on - strand, within Dsui_0812at 824.413 kb on - strand, within Dsui_0812at 824.432 kb on - strand, within Dsui_0812at 824.444 kb on + strand, within Dsui_0812at 824.457 kb on - strand, within Dsui_0812at 824.467 kb on - strand, within Dsui_0812at 824.469 kb on + strand, within Dsui_0812at 824.474 kb on + strand, within Dsui_0812at 824.482 kb on - strand, within Dsui_0812at 824.508 kb on + strand, within Dsui_0812at 824.512 kb on + strand, within Dsui_0812at 824.519 kb on + strand, within Dsui_0812at 824.527 kb on - strand, within Dsui_0812at 824.563 kb on - strandat 824.619 kb on - strandat 824.653 kb on - strandat 824.653 kb on - strandat 824.684 kb on + strandat 824.734 kb on + strandat 824.761 kb on - strandat 824.794 kb on + strandat 824.825 kb on + strandat 824.825 kb on + strandat 824.825 kb on + strandat 824.830 kb on + strandat 824.844 kb on - strandat 824.867 kb on + strandat 824.867 kb on - strandat 824.870 kb on - strandat 824.875 kb on - strandat 824.877 kb on + strandat 824.880 kb on - strandat 824.885 kb on - strandat 824.890 kb on + strandat 824.943 kb on + strandat 824.943 kb on + strandat 824.948 kb on + strandat 824.948 kb on + strandat 824.951 kb on - strandat 825.021 kb on + strand, within Dsui_0813at 825.021 kb on + strand, within Dsui_0813at 825.080 kb on + strand, within Dsui_0813at 825.083 kb on - strand, within Dsui_0813at 825.088 kb on - strand, within Dsui_0813at 825.118 kb on + strand, within Dsui_0813at 825.127 kb on - strand, within Dsui_0813at 825.143 kb on - strand, within Dsui_0813at 825.147 kb on + strand, within Dsui_0813at 825.204 kb on + strand, within Dsui_0813at 825.212 kb on - strand, within Dsui_0813at 825.214 kb on + strand, within Dsui_0813at 825.268 kb on + strand, within Dsui_0813at 825.292 kb on + strand, within Dsui_0813at 825.292 kb on + strand, within Dsui_0813at 825.300 kb on - strand, within Dsui_0813at 825.300 kb on - strand, within Dsui_0813at 825.307 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.315 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.334 kb on - strand, within Dsui_0813at 825.349 kb on + strand, within Dsui_0813at 825.364 kb on + strand, within Dsui_0813at 825.396 kb on - strand, within Dsui_0813at 825.412 kb on - strand, within Dsui_0813at 825.431 kb on + strand, within Dsui_0813at 825.436 kb on - strand, within Dsui_0813at 825.438 kb on + strand, within Dsui_0813at 825.455 kb on + strand, within Dsui_0813at 825.525 kb on - strand, within Dsui_0813at 825.569 kb on - strand, within Dsui_0813at 825.658 kb on - strand, within Dsui_0813

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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822,368 - Dsui_0810 0.80 -1.1
822,408 + Dsui_0810 0.82 -0.4
822,686 + -0.5
822,686 + -0.6
822,694 - +0.8
822,759 - +0.9
822,795 + -1.1
822,806 + -1.7
822,870 + Dsui_0811 0.14 -0.9
822,892 + Dsui_0811 0.18 -0.7
822,892 + Dsui_0811 0.18 -1.6
822,902 + Dsui_0811 0.20 -0.9
822,911 + Dsui_0811 0.21 -0.4
822,952 + Dsui_0811 0.28 -1.4
822,952 + Dsui_0811 0.28 -0.9
822,970 - Dsui_0811 0.31 -2.1
822,980 - Dsui_0811 0.32 +1.3
823,027 - Dsui_0811 0.40 -1.4
823,054 + Dsui_0811 0.44 +0.7
823,065 + Dsui_0811 0.46 -0.9
823,189 + Dsui_0811 0.67 -1.7
823,255 - Dsui_0811 0.78 -1.8
823,256 - Dsui_0811 0.78 -0.6
823,282 - Dsui_0811 0.82 +0.9
823,282 - Dsui_0811 0.82 +0.4
823,297 - Dsui_0811 0.84 -0.6
823,356 - -0.4
823,379 - -0.2
823,379 - +0.2
823,379 - -0.1
823,392 - -0.2
823,400 - +0.5
823,403 + -0.8
823,467 + -0.0
823,479 + -0.3
823,479 + +0.4
823,487 - Dsui_0812 0.10 -0.0
823,522 + Dsui_0812 0.13 -0.1
823,525 - Dsui_0812 0.13 +0.2
823,539 + Dsui_0812 0.14 +1.9
823,578 - Dsui_0812 0.17 -0.0
823,685 - Dsui_0812 0.25 +0.2
823,706 - Dsui_0812 0.27 +0.2
823,708 - Dsui_0812 0.27 -0.2
823,723 + Dsui_0812 0.28 -0.9
823,752 + Dsui_0812 0.30 +0.4
823,752 + Dsui_0812 0.30 +1.4
823,818 + Dsui_0812 0.35 +0.0
823,826 - Dsui_0812 0.36 -0.5
823,827 - Dsui_0812 0.36 +0.1
823,831 - Dsui_0812 0.36 -1.0
823,831 - Dsui_0812 0.36 +0.3
823,831 - Dsui_0812 0.36 -0.6
823,831 - Dsui_0812 0.36 +0.3
823,841 - Dsui_0812 0.37 -1.4
823,926 + Dsui_0812 0.43 +0.4
823,931 + Dsui_0812 0.43 +0.9
823,936 + Dsui_0812 0.44 +0.7
823,936 + Dsui_0812 0.44 +0.7
823,936 + Dsui_0812 0.44 -0.0
824,009 - Dsui_0812 0.49 -0.4
824,017 + Dsui_0812 0.50 +0.9
824,023 + Dsui_0812 0.50 -0.0
824,025 - Dsui_0812 0.50 +0.2
824,067 + Dsui_0812 0.54 -1.1
824,095 - Dsui_0812 0.56 +0.1
824,185 + Dsui_0812 0.62 -1.5
824,222 + Dsui_0812 0.65 +0.6
824,230 - Dsui_0812 0.66 +0.2
824,270 + Dsui_0812 0.69 -0.6
824,273 - Dsui_0812 0.69 +0.3
824,329 + Dsui_0812 0.73 -1.0
824,329 + Dsui_0812 0.73 -1.1
824,329 + Dsui_0812 0.73 -0.9
824,329 + Dsui_0812 0.73 -1.3
824,337 - Dsui_0812 0.74 -0.6
824,337 - Dsui_0812 0.74 -0.9
824,337 - Dsui_0812 0.74 +0.0
824,337 - Dsui_0812 0.74 -0.2
824,342 - Dsui_0812 0.74 +0.2
824,344 + Dsui_0812 0.74 -0.0
824,344 + Dsui_0812 0.74 -0.2
824,352 - Dsui_0812 0.75 -0.5
824,357 - Dsui_0812 0.75 +0.4
824,357 - Dsui_0812 0.75 -0.9
824,376 - Dsui_0812 0.77 -0.2
824,386 - Dsui_0812 0.77 -0.8
824,392 + Dsui_0812 0.78 -0.1
824,410 + Dsui_0812 0.79 -1.0
824,413 - Dsui_0812 0.79 -0.1
824,413 - Dsui_0812 0.79 -0.2
824,432 - Dsui_0812 0.81 -0.8
824,444 + Dsui_0812 0.82 +0.3
824,457 - Dsui_0812 0.83 +1.0
824,467 - Dsui_0812 0.83 -0.9
824,469 + Dsui_0812 0.84 -0.2
824,474 + Dsui_0812 0.84 +0.7
824,482 - Dsui_0812 0.85 +0.0
824,508 + Dsui_0812 0.86 -0.4
824,512 + Dsui_0812 0.87 -0.1
824,519 + Dsui_0812 0.87 -0.4
824,527 - Dsui_0812 0.88 +0.0
824,563 - +0.1
824,619 - -0.4
824,653 - -0.4
824,653 - -0.0
824,684 + -1.2
824,734 + -0.2
824,761 - +0.7
824,794 + -0.0
824,825 + -0.0
824,825 + +0.2
824,825 + -0.0
824,830 + +0.8
824,844 - -0.1
824,867 + -0.5
824,867 - -0.4
824,870 - -1.5
824,875 - +0.3
824,877 + +0.0
824,880 - -0.2
824,885 - -0.4
824,890 + -0.3
824,943 + +0.0
824,943 + -0.2
824,948 + -0.0
824,948 + -0.2
824,951 - -0.9
825,021 + Dsui_0813 0.18 -0.0
825,021 + Dsui_0813 0.18 +0.1
825,080 + Dsui_0813 0.24 +0.2
825,083 - Dsui_0813 0.24 -0.2
825,088 - Dsui_0813 0.25 -0.3
825,118 + Dsui_0813 0.28 -0.4
825,127 - Dsui_0813 0.29 -0.6
825,143 - Dsui_0813 0.31 +0.3
825,147 + Dsui_0813 0.32 -0.1
825,204 + Dsui_0813 0.38 -0.4
825,212 - Dsui_0813 0.39 -0.3
825,214 + Dsui_0813 0.39 -0.2
825,268 + Dsui_0813 0.45 -0.3
825,292 + Dsui_0813 0.48 +0.2
825,292 + Dsui_0813 0.48 +0.0
825,300 - Dsui_0813 0.49 +1.7
825,300 - Dsui_0813 0.49 -0.1
825,307 + Dsui_0813 0.49 +0.2
825,314 + Dsui_0813 0.50 -0.1
825,314 + Dsui_0813 0.50 +0.1
825,314 + Dsui_0813 0.50 -0.1
825,314 + Dsui_0813 0.50 +0.1
825,314 + Dsui_0813 0.50 -0.0
825,315 - Dsui_0813 0.50 +0.0
825,322 - Dsui_0813 0.51 +0.6
825,322 - Dsui_0813 0.51 +0.3
825,322 - Dsui_0813 0.51 -0.0
825,322 - Dsui_0813 0.51 -0.2
825,322 - Dsui_0813 0.51 -0.4
825,322 - Dsui_0813 0.51 -0.4
825,322 - Dsui_0813 0.51 -0.2
825,334 - Dsui_0813 0.52 -0.0
825,349 + Dsui_0813 0.54 -0.4
825,364 + Dsui_0813 0.56 +0.1
825,396 - Dsui_0813 0.59 -0.5
825,412 - Dsui_0813 0.61 +0.2
825,431 + Dsui_0813 0.63 +0.1
825,436 - Dsui_0813 0.64 +0.7
825,438 + Dsui_0813 0.64 +0.0
825,455 + Dsui_0813 0.66 -0.1
825,525 - Dsui_0813 0.73 +0.1
825,569 - Dsui_0813 0.78 -0.1
825,658 - Dsui_0813 0.88 -0.1

Or see this region's nucleotide sequence