Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0648 and Dsui_0649 are separated by 19 nucleotides Dsui_0649 and Dsui_0650 overlap by 4 nucleotides Dsui_0650 and Dsui_0651 are separated by 14 nucleotides Dsui_0651 and Dsui_0652 are separated by 4 nucleotides
Dsui_0648: Dsui_0648 - acetyltransferase, at 642,232 to 642,753
_0648
Dsui_0649: Dsui_0649 - diaminopimelate epimerase, at 642,773 to 643,603
_0649
Dsui_0650: Dsui_0650 - hypothetical protein, at 643,600 to 644,280
_0650
Dsui_0651: Dsui_0651 - tyrosine recombinase XerC, at 644,295 to 645,200
_0651
Dsui_0652: Dsui_0652 - putative membrane protein, at 645,205 to 646,335
_0652
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 642.642 kb on + strand, within Dsui_0648 at 642.650 kb on - strand, within Dsui_0648 at 642.650 kb on - strand, within Dsui_0648 at 642.668 kb on + strand, within Dsui_0648 at 642.684 kb on - strand, within Dsui_0648 at 642.734 kb on - strand at 642.763 kb on + strand at 643.608 kb on + strand at 643.616 kb on - strand at 643.650 kb on - strand at 643.676 kb on - strand, within Dsui_0650 at 643.725 kb on + strand, within Dsui_0650 at 643.757 kb on + strand, within Dsui_0650 at 643.776 kb on + strand, within Dsui_0650 at 643.784 kb on - strand at 643.784 kb on - strand, within Dsui_0650 at 643.864 kb on - strand, within Dsui_0650 at 644.038 kb on + strand, within Dsui_0650 at 644.041 kb on - strand, within Dsui_0650 at 644.047 kb on - strand, within Dsui_0650 at 644.136 kb on - strand at 644.282 kb on - strand at 644.428 kb on + strand, within Dsui_0651 at 644.436 kb on - strand, within Dsui_0651 at 644.436 kb on - strand, within Dsui_0651 at 644.632 kb on - strand at 644.731 kb on - strand at 644.739 kb on - strand, within Dsui_0651 at 644.890 kb on + strand, within Dsui_0651 at 644.999 kb on - strand, within Dsui_0651 at 645.057 kb on + strand, within Dsui_0651 at 645.133 kb on - strand at 645.133 kb on - strand at 645.133 kb on - strand at 645.162 kb on + strand at 645.170 kb on - strand at 645.196 kb on + strand at 645.215 kb on - strand at 645.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 642,642 + Dsui_0648 0.79 +0.3 642,650 - Dsui_0648 0.80 -0.1 642,650 - Dsui_0648 0.80 +0.9 642,668 + Dsui_0648 0.84 -0.8 642,684 - Dsui_0648 0.87 -0.7 642,734 - +0.0 642,763 + +1.7 643,608 + -1.1 643,616 - -1.3 643,650 - +0.3 643,676 - Dsui_0650 0.11 -1.5 643,725 + Dsui_0650 0.18 -1.4 643,757 + Dsui_0650 0.23 -2.7 643,776 + Dsui_0650 0.26 -0.7 643,784 - +0.3 643,784 - Dsui_0650 0.27 -2.0 643,864 - Dsui_0650 0.39 -0.9 644,038 + Dsui_0650 0.64 -2.5 644,041 - Dsui_0650 0.65 -0.9 644,047 - Dsui_0650 0.66 -1.4 644,136 - -1.1 644,282 - +0.4 644,428 + Dsui_0651 0.15 -0.9 644,436 - Dsui_0651 0.16 -0.1 644,436 - Dsui_0651 0.16 +0.2 644,632 - +0.9 644,731 - -0.1 644,739 - Dsui_0651 0.49 -1.1 644,890 + Dsui_0651 0.66 -1.5 644,999 - Dsui_0651 0.78 -0.7 645,057 + Dsui_0651 0.84 +0.5 645,133 - +0.9 645,133 - +0.3 645,133 - -0.4 645,162 + -0.9 645,170 - +1.2 645,196 + +0.1 645,215 - +0.7 645,229 + +0.3
Or see this region's nucleotide sequence