Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0387 and Dsui_0388 are separated by 88 nucleotides Dsui_0388 and Dsui_0389 are separated by 12 nucleotides Dsui_0389 and Dsui_0390 are separated by 6 nucleotides Dsui_0390 and Dsui_0391 overlap by 4 nucleotides
Dsui_0387: Dsui_0387 - 3-dehydroquinate dehydratase, type II, at 386,578 to 387,078
_0387
Dsui_0388: Dsui_0388 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 387,167 to 387,616
_0388
Dsui_0389: Dsui_0389 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 387,629 to 388,996
_0389
Dsui_0390: Dsui_0390 - ribosomal protein L11 methyltransferase, at 389,003 to 389,890
_0390
Dsui_0391: Dsui_0391 - Protein of unknown function (DUF3426), at 389,887 to 390,879
_0391
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1
2 at 387.086 kb on + strand at 387.086 kb on + strand at 387.086 kb on + strand at 387.134 kb on + strand at 389.051 kb on + strand at 389.128 kb on - strand, within Dsui_0390 at 389.176 kb on - strand, within Dsui_0390 at 389.205 kb on - strand, within Dsui_0390 at 389.301 kb on + strand, within Dsui_0390 at 389.309 kb on - strand, within Dsui_0390 at 389.323 kb on + strand, within Dsui_0390 at 389.350 kb on + strand, within Dsui_0390 at 389.455 kb on + strand, within Dsui_0390 at 389.468 kb on - strand at 389.611 kb on + strand, within Dsui_0390 at 389.619 kb on - strand, within Dsui_0390 at 389.706 kb on - strand, within Dsui_0390 at 389.739 kb on - strand, within Dsui_0390 at 389.741 kb on + strand, within Dsui_0390 at 389.781 kb on - strand, within Dsui_0390 at 389.904 kb on + strand at 389.912 kb on - strand at 389.927 kb on + strand at 389.947 kb on - strand at 389.947 kb on - strand at 389.957 kb on - strand at 389.957 kb on - strand at 389.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 387,086 + -0.2 387,086 + +0.4 387,086 + -0.4 387,134 + +1.6 389,051 + -0.9 389,128 - Dsui_0390 0.14 +0.0 389,176 - Dsui_0390 0.19 -0.2 389,205 - Dsui_0390 0.23 +0.0 389,301 + Dsui_0390 0.34 +1.3 389,309 - Dsui_0390 0.34 -1.3 389,323 + Dsui_0390 0.36 +0.6 389,350 + Dsui_0390 0.39 -0.0 389,455 + Dsui_0390 0.51 +0.1 389,468 - +0.8 389,611 + Dsui_0390 0.68 +2.2 389,619 - Dsui_0390 0.69 +0.5 389,706 - Dsui_0390 0.79 +1.0 389,739 - Dsui_0390 0.83 +0.4 389,741 + Dsui_0390 0.83 +0.1 389,781 - Dsui_0390 0.88 +0.1 389,904 + +0.2 389,912 - +0.7 389,927 + -0.7 389,947 - -0.8 389,947 - -0.1 389,957 - +0.3 389,957 - +2.0 389,957 - +0.3
Or see this region's nucleotide sequence