Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0321 and Dsui_0322 are separated by 63 nucleotides Dsui_0322 and Dsui_0323 overlap by 8 nucleotides
Dsui_0321: Dsui_0321 - long-chain fatty acid transport protein, at 325,119 to 326,417
_0321
Dsui_0322: Dsui_0322 - acyl-CoA hydrolase, at 326,481 to 326,879
_0322
Dsui_0323: Dsui_0323 - 3-hydroxyacyl-CoA dehydrogenase, at 326,872 to 328,809
_0323
Position (kb) 326
327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.499 kb on + strand at 325.499 kb on + strand, within Dsui_0321 at 325.508 kb on + strand, within Dsui_0321 at 325.570 kb on - strand, within Dsui_0321 at 325.581 kb on - strand, within Dsui_0321 at 325.596 kb on - strand, within Dsui_0321 at 325.603 kb on + strand, within Dsui_0321 at 325.700 kb on - strand, within Dsui_0321 at 325.714 kb on - strand, within Dsui_0321 at 325.778 kb on + strand, within Dsui_0321 at 325.859 kb on - strand, within Dsui_0321 at 325.898 kb on - strand, within Dsui_0321 at 325.917 kb on - strand, within Dsui_0321 at 325.950 kb on - strand, within Dsui_0321 at 326.004 kb on + strand, within Dsui_0321 at 326.009 kb on + strand, within Dsui_0321 at 326.012 kb on - strand, within Dsui_0321 at 326.034 kb on + strand, within Dsui_0321 at 326.187 kb on - strand, within Dsui_0321 at 326.194 kb on + strand, within Dsui_0321 at 326.199 kb on + strand, within Dsui_0321 at 326.261 kb on + strand, within Dsui_0321 at 326.303 kb on - strand at 326.359 kb on + strand at 326.397 kb on + strand at 326.405 kb on - strand at 326.460 kb on - strand at 326.597 kb on + strand, within Dsui_0322 at 326.603 kb on - strand, within Dsui_0322 at 326.605 kb on - strand, within Dsui_0322 at 326.605 kb on - strand, within Dsui_0322 at 326.611 kb on - strand, within Dsui_0322 at 326.769 kb on + strand, within Dsui_0322 at 326.839 kb on - strand, within Dsui_0322 at 327.040 kb on + strand at 327.064 kb on + strand at 327.167 kb on - strand, within Dsui_0323 at 327.228 kb on + strand, within Dsui_0323 at 327.256 kb on + strand, within Dsui_0323 at 327.292 kb on + strand, within Dsui_0323 at 327.341 kb on + strand, within Dsui_0323 at 327.412 kb on + strand at 327.414 kb on - strand, within Dsui_0323 at 327.420 kb on - strand, within Dsui_0323 at 327.449 kb on + strand, within Dsui_0323 at 327.528 kb on + strand, within Dsui_0323 at 327.552 kb on + strand, within Dsui_0323 at 327.758 kb on + strand, within Dsui_0323 at 327.777 kb on - strand, within Dsui_0323
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 325,499 + +0.6 325,499 + Dsui_0321 0.29 +0.0 325,508 + Dsui_0321 0.30 +0.7 325,570 - Dsui_0321 0.35 -0.2 325,581 - Dsui_0321 0.36 +0.4 325,596 - Dsui_0321 0.37 +0.4 325,603 + Dsui_0321 0.37 +0.3 325,700 - Dsui_0321 0.45 -0.4 325,714 - Dsui_0321 0.46 +0.1 325,778 + Dsui_0321 0.51 -0.2 325,859 - Dsui_0321 0.57 +0.5 325,898 - Dsui_0321 0.60 -0.4 325,917 - Dsui_0321 0.61 -0.2 325,950 - Dsui_0321 0.64 -0.3 326,004 + Dsui_0321 0.68 -0.0 326,009 + Dsui_0321 0.69 +2.5 326,012 - Dsui_0321 0.69 -0.8 326,034 + Dsui_0321 0.70 -0.1 326,187 - Dsui_0321 0.82 -0.0 326,194 + Dsui_0321 0.83 -0.6 326,199 + Dsui_0321 0.83 +0.9 326,261 + Dsui_0321 0.88 +0.5 326,303 - -0.0 326,359 + -0.2 326,397 + +0.3 326,405 - +0.1 326,460 - +0.4 326,597 + Dsui_0322 0.29 -0.0 326,603 - Dsui_0322 0.31 -0.2 326,605 - Dsui_0322 0.31 +0.4 326,605 - Dsui_0322 0.31 +0.8 326,611 - Dsui_0322 0.33 +0.2 326,769 + Dsui_0322 0.72 +1.1 326,839 - Dsui_0322 0.90 +0.3 327,040 + -0.0 327,064 + +0.3 327,167 - Dsui_0323 0.15 -0.1 327,228 + Dsui_0323 0.18 -1.9 327,256 + Dsui_0323 0.20 +0.2 327,292 + Dsui_0323 0.22 +0.3 327,341 + Dsui_0323 0.24 +1.0 327,412 + -0.6 327,414 - Dsui_0323 0.28 +0.1 327,420 - Dsui_0323 0.28 +0.1 327,449 + Dsui_0323 0.30 +0.7 327,528 + Dsui_0323 0.34 +0.3 327,552 + Dsui_0323 0.35 -0.2 327,758 + Dsui_0323 0.46 -0.4 327,777 - Dsui_0323 0.47 +0.4
Or see this region's nucleotide sequence