Strain Fitness in Shewanella amazonensis SB2B around Sama_2230

Experiment: Gly-Glu

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_2228 and Sama_2229 are separated by 124 nucleotidesSama_2229 and Sama_2230 overlap by 4 nucleotidesSama_2230 and Sama_2231 are separated by 139 nucleotides Sama_2228: Sama_2228 - decaheme cytochrome c (RefSeq), at 2,691,526 to 2,693,793 _2228 Sama_2229: Sama_2229 - hypothetical protein (RefSeq), at 2,693,918 to 2,694,610 _2229 Sama_2230: Sama_2230 - hypothetical protein (RefSeq), at 2,694,607 to 2,695,344 _2230 Sama_2231: Sama_2231 - glucokinase (EC 2.7.1.2) (from data), at 2,695,484 to 2,696,383 _2231 Position (kb) 2694 2695 2696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2693.619 kb on + strandat 2693.619 kb on + strandat 2693.620 kb on - strandat 2693.677 kb on + strandat 2693.677 kb on + strandat 2693.677 kb on + strandat 2693.677 kb on + strandat 2693.749 kb on - strandat 2693.755 kb on + strandat 2693.766 kb on + strandat 2693.791 kb on + strandat 2693.887 kb on + strandat 2693.887 kb on + strandat 2693.893 kb on + strandat 2693.893 kb on + strandat 2693.894 kb on - strandat 2693.894 kb on - strandat 2693.906 kb on + strandat 2693.929 kb on + strandat 2693.929 kb on + strandat 2693.929 kb on + strandat 2693.930 kb on - strandat 2693.930 kb on - strandat 2694.014 kb on - strand, within Sama_2229at 2694.014 kb on - strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.025 kb on - strand, within Sama_2229at 2694.037 kb on + strand, within Sama_2229at 2694.226 kb on + strand, within Sama_2229at 2694.226 kb on + strand, within Sama_2229at 2694.226 kb on + strand, within Sama_2229at 2694.227 kb on - strand, within Sama_2229at 2694.229 kb on + strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.259 kb on + strand, within Sama_2229at 2694.302 kb on + strand, within Sama_2229at 2694.303 kb on - strand, within Sama_2229at 2694.303 kb on - strand, within Sama_2229at 2694.359 kb on - strand, within Sama_2229at 2694.359 kb on - strand, within Sama_2229at 2694.359 kb on - strand, within Sama_2229at 2694.457 kb on + strand, within Sama_2229at 2694.458 kb on - strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.462 kb on - strand, within Sama_2229at 2694.462 kb on - strand, within Sama_2229at 2694.462 kb on - strand, within Sama_2229at 2694.536 kb on + strand, within Sama_2229at 2694.536 kb on + strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.540 kb on - strand, within Sama_2229at 2694.540 kb on - strand, within Sama_2229at 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.691 kb on + strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.812 kb on - strand, within Sama_2230at 2694.812 kb on - strand, within Sama_2230at 2694.839 kb on - strand, within Sama_2230at 2694.839 kb on - strand, within Sama_2230at 2694.887 kb on - strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2695.060 kb on + strand, within Sama_2230at 2695.061 kb on - strand, within Sama_2230at 2695.111 kb on + strand, within Sama_2230at 2695.149 kb on - strand, within Sama_2230at 2695.171 kb on + strand, within Sama_2230at 2695.222 kb on + strand, within Sama_2230at 2695.222 kb on + strand, within Sama_2230at 2695.223 kb on - strand, within Sama_2230at 2695.320 kb on - strandat 2695.349 kb on - strandat 2695.360 kb on + strandat 2695.383 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.547 kb on + strandat 2695.548 kb on - strandat 2695.548 kb on - strandat 2695.581 kb on + strand, within Sama_2231at 2695.581 kb on + strand, within Sama_2231at 2695.581 kb on + strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.611 kb on + strand, within Sama_2231at 2695.611 kb on + strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.612 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.634 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.670 kb on - strand, within Sama_2231at 2695.721 kb on + strand, within Sama_2231at 2695.751 kb on + strand, within Sama_2231at 2695.752 kb on - strand, within Sama_2231at 2695.752 kb on - strand, within Sama_2231at 2696.039 kb on + strand, within Sama_2231at 2696.040 kb on - strand, within Sama_2231at 2696.100 kb on - strand, within Sama_2231at 2696.100 kb on - strand, within Sama_2231at 2696.134 kb on + strand, within Sama_2231at 2696.134 kb on + strand, within Sama_2231at 2696.170 kb on + strand, within Sama_2231at 2696.171 kb on - strand, within Sama_2231at 2696.171 kb on - strand, within Sama_2231at 2696.171 kb on - strand, within Sama_2231at 2696.173 kb on - strand, within Sama_2231at 2696.278 kb on - strand, within Sama_2231at 2696.296 kb on + strandat 2696.297 kb on - strandat 2696.297 kb on - strandat 2696.297 kb on - strandat 2696.297 kb on - strandat 2696.303 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu
remove
2,693,619 + -0.9
2,693,619 + +0.6
2,693,620 - +0.8
2,693,677 + +0.7
2,693,677 + +0.0
2,693,677 + -0.8
2,693,677 + +1.4
2,693,749 - -0.8
2,693,755 + -0.1
2,693,766 + +0.6
2,693,791 + -0.3
2,693,887 + -0.1
2,693,887 + -0.8
2,693,893 + +1.3
2,693,893 + -0.6
2,693,894 - -0.2
2,693,894 - +0.2
2,693,906 + -0.3
2,693,929 + -0.1
2,693,929 + +2.3
2,693,929 + -0.3
2,693,930 - +0.1
2,693,930 - -0.3
2,694,014 - Sama_2229 0.14 +0.3
2,694,014 - Sama_2229 0.14 -0.3
2,694,015 + Sama_2229 0.14 +0.4
2,694,015 + Sama_2229 0.14 +0.4
2,694,015 + Sama_2229 0.14 +0.5
2,694,015 + Sama_2229 0.14 -1.0
2,694,015 + Sama_2229 0.14 -1.4
2,694,015 + Sama_2229 0.14 -0.8
2,694,015 + Sama_2229 0.14 -0.8
2,694,015 + Sama_2229 0.14 +0.4
2,694,015 + Sama_2229 0.14 +1.0
2,694,015 + Sama_2229 0.14 -0.3
2,694,016 - Sama_2229 0.14 -0.0
2,694,016 - Sama_2229 0.14 +0.9
2,694,016 - Sama_2229 0.14 -0.1
2,694,016 - Sama_2229 0.14 -0.3
2,694,016 - Sama_2229 0.14 -0.3
2,694,016 - Sama_2229 0.14 -0.9
2,694,016 - Sama_2229 0.14 -2.5
2,694,025 - Sama_2229 0.15 +0.4
2,694,037 + Sama_2229 0.17 +0.8
2,694,226 + Sama_2229 0.44 +0.1
2,694,226 + Sama_2229 0.44 +0.9
2,694,226 + Sama_2229 0.44 +0.2
2,694,227 - Sama_2229 0.45 -0.6
2,694,229 + Sama_2229 0.45 -1.4
2,694,230 - Sama_2229 0.45 -1.6
2,694,230 - Sama_2229 0.45 +0.4
2,694,230 - Sama_2229 0.45 +0.4
2,694,230 - Sama_2229 0.45 -0.8
2,694,230 - Sama_2229 0.45 -0.3
2,694,259 + Sama_2229 0.49 -0.6
2,694,302 + Sama_2229 0.55 +0.9
2,694,303 - Sama_2229 0.56 -0.8
2,694,303 - Sama_2229 0.56 -0.1
2,694,359 - Sama_2229 0.64 -0.2
2,694,359 - Sama_2229 0.64 +0.4
2,694,359 - Sama_2229 0.64 -0.6
2,694,457 + Sama_2229 0.78 -0.6
2,694,458 - Sama_2229 0.78 -0.2
2,694,461 + Sama_2229 0.78 +0.7
2,694,461 + Sama_2229 0.78 +0.2
2,694,461 + Sama_2229 0.78 +0.4
2,694,461 + Sama_2229 0.78 -0.2
2,694,461 + Sama_2229 0.78 -0.1
2,694,462 - Sama_2229 0.78 -0.1
2,694,462 - Sama_2229 0.78 -0.8
2,694,462 - Sama_2229 0.78 -0.1
2,694,536 + Sama_2229 0.89 -0.8
2,694,536 + Sama_2229 0.89 -0.7
2,694,537 - Sama_2229 0.89 +1.3
2,694,537 - Sama_2229 0.89 -0.8
2,694,537 - Sama_2229 0.89 +0.4
2,694,537 - Sama_2229 0.89 -0.3
2,694,540 - Sama_2229 0.90 -1.9
2,694,540 - Sama_2229 0.90 +0.9
2,694,647 + -0.1
2,694,647 + -0.8
2,694,647 + +0.1
2,694,647 + +1.8
2,694,648 - -0.6
2,694,648 - -0.2
2,694,648 - -0.7
2,694,648 - +0.2
2,694,648 - -0.8
2,694,691 + Sama_2230 0.11 +0.0
2,694,787 - Sama_2230 0.24 +0.4
2,694,787 - Sama_2230 0.24 -1.1
2,694,787 - Sama_2230 0.24 +0.4
2,694,812 - Sama_2230 0.28 +0.6
2,694,812 - Sama_2230 0.28 +0.1
2,694,839 - Sama_2230 0.31 +0.1
2,694,839 - Sama_2230 0.31 -0.9
2,694,887 - Sama_2230 0.38 -0.3
2,694,956 + Sama_2230 0.47 +0.4
2,694,956 + Sama_2230 0.47 +0.8
2,694,956 + Sama_2230 0.47 +1.9
2,694,956 + Sama_2230 0.47 -1.0
2,694,956 + Sama_2230 0.47 -1.1
2,694,957 - Sama_2230 0.47 -0.3
2,694,957 - Sama_2230 0.47 +2.2
2,694,957 - Sama_2230 0.47 -0.1
2,695,060 + Sama_2230 0.61 -0.4
2,695,061 - Sama_2230 0.62 +0.7
2,695,111 + Sama_2230 0.68 -0.4
2,695,149 - Sama_2230 0.73 +0.3
2,695,171 + Sama_2230 0.76 +0.3
2,695,222 + Sama_2230 0.83 -2.1
2,695,222 + Sama_2230 0.83 +0.2
2,695,223 - Sama_2230 0.83 +1.6
2,695,320 - +0.0
2,695,349 - -0.1
2,695,360 + -0.4
2,695,383 - -1.7
2,695,537 - +1.4
2,695,537 - -0.2
2,695,547 + +0.2
2,695,548 - +0.4
2,695,548 - -0.6
2,695,581 + Sama_2231 0.11 -0.9
2,695,581 + Sama_2231 0.11 +0.6
2,695,581 + Sama_2231 0.11 +0.1
2,695,582 - Sama_2231 0.11 +0.6
2,695,582 - Sama_2231 0.11 -0.8
2,695,582 - Sama_2231 0.11 -0.6
2,695,582 - Sama_2231 0.11 -0.6
2,695,582 - Sama_2231 0.11 +1.0
2,695,582 - Sama_2231 0.11 -1.4
2,695,611 + Sama_2231 0.14 -0.1
2,695,611 + Sama_2231 0.14 +3.0
2,695,612 - Sama_2231 0.14 +0.3
2,695,612 - Sama_2231 0.14 +0.9
2,695,612 - Sama_2231 0.14 +1.0
2,695,612 - Sama_2231 0.14 -0.1
2,695,612 - Sama_2231 0.14 +0.0
2,695,634 - Sama_2231 0.17 -1.0
2,695,634 - Sama_2231 0.17 -0.8
2,695,634 - Sama_2231 0.17 -1.4
2,695,634 - Sama_2231 0.17 -1.3
2,695,670 - Sama_2231 0.21 -1.0
2,695,670 - Sama_2231 0.21 +1.4
2,695,670 - Sama_2231 0.21 -0.9
2,695,670 - Sama_2231 0.21 -0.5
2,695,721 + Sama_2231 0.26 +0.4
2,695,751 + Sama_2231 0.30 -1.4
2,695,752 - Sama_2231 0.30 -0.9
2,695,752 - Sama_2231 0.30 -0.6
2,696,039 + Sama_2231 0.62 +0.1
2,696,040 - Sama_2231 0.62 +2.8
2,696,100 - Sama_2231 0.68 -0.7
2,696,100 - Sama_2231 0.68 +0.4
2,696,134 + Sama_2231 0.72 +0.4
2,696,134 + Sama_2231 0.72 -2.4
2,696,170 + Sama_2231 0.76 +0.4
2,696,171 - Sama_2231 0.76 -2.0
2,696,171 - Sama_2231 0.76 +0.8
2,696,171 - Sama_2231 0.76 -0.1
2,696,173 - Sama_2231 0.77 -3.3
2,696,278 - Sama_2231 0.88 -1.0
2,696,296 + -0.3
2,696,297 - -0.8
2,696,297 - -1.1
2,696,297 - -0.6
2,696,297 - -0.4
2,696,303 - +0.9

Or see this region's nucleotide sequence