Strain Fitness in Shewanella amazonensis SB2B around Sama_1099

Experiment: Gly-Glu

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gly-Glu
1,322,620	+		Sama_1097	0.72	-0.2
1,322,620	+		Sama_1097	0.72	-0.5
1,322,620	+		Sama_1097	0.72	-0.8
1,322,641	+		Sama_1097	0.79	-0.6
1,322,641	+		Sama_1097	0.79	+0.7
1,322,643	+		Sama_1097	0.79	-0.2
1,322,643	+		Sama_1097	0.79	-0.9
1,322,643	+		Sama_1097	0.79	-0.5
1,322,643	+		Sama_1097	0.79	+0.3
1,322,643	+		Sama_1097	0.79	+0.6
1,322,643	+		Sama_1097	0.79	+0.1
1,322,643	+		Sama_1097	0.79	-0.9
1,322,644	-		Sama_1097	0.79	-0.1
1,322,644	-		Sama_1097	0.79	-0.5
1,322,644	-		Sama_1097	0.79	+1.7
1,322,688	-				+0.7
1,322,730	+				-0.2
1,322,730	+				-3.0
1,322,730	+				-1.6
1,322,768	-				-0.1
1,322,813	+				-1.0
1,322,817	+				-0.1
1,322,818	-				-0.8
1,322,905	-		Sama_1098	0.16	-0.6
1,322,952	+		Sama_1098	0.23	-0.5
1,322,952	+		Sama_1098	0.23	-0.8
1,322,952	+		Sama_1098	0.23	+0.9
1,322,952	+		Sama_1098	0.23	-0.2
1,322,990	-		Sama_1098	0.28	+0.3
1,323,009	+		Sama_1098	0.31	+2.2
1,323,009	+		Sama_1098	0.31	+0.1
1,323,009	+		Sama_1098	0.31	+0.3
1,323,009	+		Sama_1098	0.31	-0.4
1,323,009	+		Sama_1098	0.31	-0.5
1,323,010	-		Sama_1098	0.31	-2.0
1,323,010	-		Sama_1098	0.31	-0.6
1,323,010	-		Sama_1098	0.31	-0.8
1,323,010	-		Sama_1098	0.31	-1.0
1,323,010	-		Sama_1098	0.31	+0.9
1,323,015	+		Sama_1098	0.32	-0.4
1,323,015	+		Sama_1098	0.32	+0.6
1,323,015	+		Sama_1098	0.32	+0.4
1,323,015	+		Sama_1098	0.32	-0.4
1,323,016	-		Sama_1098	0.32	+0.8
1,323,016	-		Sama_1098	0.32	+0.6
1,323,043	+		Sama_1098	0.36	+0.3
1,323,043	+		Sama_1098	0.36	-0.8
1,323,044	-		Sama_1098	0.36	-2.2
1,323,086	-		Sama_1098	0.42	+1.1
1,323,121	+		Sama_1098	0.47	+0.5
1,323,121	+		Sama_1098	0.47	-0.8
1,323,122	-		Sama_1098	0.47	+0.5
1,323,185	+		Sama_1098	0.56	+1.8
1,323,186	-		Sama_1098	0.56	-0.3
1,323,215	+		Sama_1098	0.60	-0.1
1,323,215	+		Sama_1098	0.60	+0.6
1,323,215	+		Sama_1098	0.60	-0.4
1,323,215	+		Sama_1098	0.60	+0.6
1,323,215	+		Sama_1098	0.60	-1.0
1,323,215	+		Sama_1098	0.60	+1.9
1,323,216	-		Sama_1098	0.60	+0.4
1,323,216	-		Sama_1098	0.60	+0.1
1,323,216	-		Sama_1098	0.60	+0.2
1,323,216	-		Sama_1098	0.60	-0.5
1,323,216	-		Sama_1098	0.60	-0.8
1,323,217	+		Sama_1098	0.60	-0.2
1,323,218	-		Sama_1098	0.60	+0.1
1,323,218	-		Sama_1098	0.60	-0.1
1,323,246	+		Sama_1098	0.64	+0.5
1,323,271	+		Sama_1098	0.68	-0.0
1,323,271	+		Sama_1098	0.68	-0.6
1,323,271	+		Sama_1098	0.68	-0.7
1,323,350	+		Sama_1098	0.79	+2.2
1,323,350	+		Sama_1098	0.79	+0.1
1,323,351	-		Sama_1098	0.79	+0.9
1,323,370	+		Sama_1098	0.82	-0.6
1,323,370	+		Sama_1098	0.82	-0.3
1,323,370	+		Sama_1098	0.82	+0.4
1,323,371	-		Sama_1098	0.82	+0.6
1,323,403	+		Sama_1098	0.86	+0.3
1,323,536	+				-2.0
1,323,537	-				-1.4
1,323,537	-				-2.2
1,323,613	-				+0.2
1,323,621	+				-3.6
1,323,655	-				-2.6
1,323,658	+				-2.8
1,323,673	+				-0.4
1,323,727	-		Sama_1099	0.15	-1.3
1,323,749	+		Sama_1099	0.18	-1.5
1,323,749	+		Sama_1099	0.18	-1.4
1,323,750	-		Sama_1099	0.18	-0.7
1,323,754	-		Sama_1099	0.18	-1.4
1,323,768	+		Sama_1099	0.20	-3.6
1,323,768	+		Sama_1099	0.20	-1.3
1,323,769	-		Sama_1099	0.20	-2.6
1,323,794	-		Sama_1099	0.23	-1.6
1,323,815	-		Sama_1099	0.25	-1.4
1,323,837	-		Sama_1099	0.27	-1.3
1,323,924	+		Sama_1099	0.37	-2.8
1,323,925	-		Sama_1099	0.37	-2.0
1,323,925	-		Sama_1099	0.37	-1.0
1,323,967	+		Sama_1099	0.42	+0.6
1,323,967	+		Sama_1099	0.42	-2.1
1,323,967	+		Sama_1099	0.42	-1.3
1,323,967	+		Sama_1099	0.42	-2.5
1,323,967	+		Sama_1099	0.42	-1.5
1,323,967	+		Sama_1099	0.42	-1.0
1,323,967	+		Sama_1099	0.42	-1.4
1,323,968	-		Sama_1099	0.42	-2.7
1,324,015	-		Sama_1099	0.47	-1.0
1,324,015	-		Sama_1099	0.47	-1.3
1,324,073	+		Sama_1099	0.54	+0.2
1,324,091	+		Sama_1099	0.56	-1.4
1,324,091	+		Sama_1099	0.56	-1.0
1,324,091	+		Sama_1099	0.56	-0.2
1,324,091	+		Sama_1099	0.56	-1.0
1,324,092	-		Sama_1099	0.56	-0.7
1,324,092	-		Sama_1099	0.56	-2.0
1,324,121	+		Sama_1099	0.59	-1.7
1,324,121	+		Sama_1099	0.59	-2.3
1,324,122	-		Sama_1099	0.59	-1.1
1,324,122	-		Sama_1099	0.59	-2.3
1,324,122	-		Sama_1099	0.59	-1.4
1,324,171	+		Sama_1099	0.65	-0.8
1,324,172	-		Sama_1099	0.65	-2.5
1,324,172	-		Sama_1099	0.65	-1.7
1,324,265	+		Sama_1099	0.75	-1.3
1,324,266	-		Sama_1099	0.76	-1.6
1,324,266	-		Sama_1099	0.76	-1.4
1,324,274	+		Sama_1099	0.76	-1.4
1,324,378	+		Sama_1099	0.88	+0.2
1,324,379	-		Sama_1099	0.88	-2.0
1,324,481	+				+0.5
1,324,481	+				-2.4
1,324,481	+				-0.8
1,324,481	+				-0.5
1,324,481	+				+1.1
1,324,482	-				-1.0
1,324,482	-				+1.1
1,324,482	-				-0.2
1,324,491	+				-1.6
1,324,650	+		Sama_1100	0.40	+0.1
1,324,663	-		Sama_1100	0.43	-0.4
1,324,669	-		Sama_1100	0.44	-0.4
1,324,873	+				+0.3
1,324,873	+				+2.0
1,324,874	-				+0.6
1,324,874	-				+0.8
1,324,874	-				+0.8
1,324,874	-				+1.9
1,324,874	-				+0.8
1,324,874	-				+0.2
1,324,909	-				+0.7
1,324,909	-				+0.2
1,324,937	+				-0.8
1,324,938	-				+0.0
1,324,938	-				-0.4
1,325,149	-		Sama_1101	0.11	-0.5
1,325,149	-		Sama_1101	0.11	-2.0
1,325,149	-		Sama_1101	0.11	-0.2
1,325,165	+		Sama_1101	0.12	+0.0
1,325,255	+		Sama_1101	0.18	-0.2
1,325,277	-		Sama_1101	0.19	-0.2
1,325,303	+		Sama_1101	0.21	-0.6
1,325,304	-		Sama_1101	0.21	-0.4
1,325,318	-		Sama_1101	0.22	+0.0
1,325,326	+		Sama_1101	0.22	+0.0
1,325,326	+		Sama_1101	0.22	-0.4
1,325,382	+		Sama_1101	0.26	+1.6
1,325,397	+		Sama_1101	0.27	+0.4
1,325,397	+		Sama_1101	0.27	+1.1
1,325,398	-		Sama_1101	0.27	+1.3
1,325,398	-		Sama_1101	0.27	+0.1