Strain Fitness in Shewanella amazonensis SB2B around Sama_0874

Experiment: Gly-Glu

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0873 and Sama_0874 are separated by 187 nucleotidesSama_0874 and Sama_0875 are separated by 54 nucleotidesSama_0875 and Sama_0876 are separated by 10 nucleotides Sama_0873: Sama_0873 - L-aspartate oxidase (RefSeq), at 1,062,349 to 1,063,956 _0873 Sama_0874: Sama_0874 - RNA polymerase sigma factor RpoE (RefSeq), at 1,064,144 to 1,064,722 _0874 Sama_0875: Sama_0875 - sigma-E factor negative regulatory protein (RefSeq), at 1,064,777 to 1,065,373 _0875 Sama_0876: Sama_0876 - putative sigma E regulatory protein, MucB/RseB (RefSeq), at 1,065,384 to 1,066,322 _0876 Position (kb) 1064 1065Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1063.992 kb on + strandat 1063.992 kb on + strandat 1063.993 kb on - strandat 1063.993 kb on - strandat 1063.993 kb on - strandat 1064.016 kb on - strandat 1064.065 kb on + strandat 1064.066 kb on - strandat 1064.066 kb on - strandat 1064.067 kb on + strandat 1064.067 kb on + strandat 1064.067 kb on + strandat 1064.067 kb on + strandat 1064.067 kb on + strandat 1064.067 kb on + strandat 1064.067 kb on + strandat 1064.068 kb on - strandat 1064.068 kb on - strandat 1064.068 kb on - strandat 1064.068 kb on - strandat 1064.068 kb on - strandat 1064.077 kb on + strandat 1064.077 kb on + strandat 1064.077 kb on + strandat 1064.077 kb on + strandat 1064.078 kb on - strandat 1064.078 kb on - strandat 1064.082 kb on - strandat 1064.082 kb on - strandat 1064.085 kb on + strandat 1064.085 kb on + strandat 1064.086 kb on - strandat 1064.086 kb on - strandat 1064.089 kb on + strandat 1064.090 kb on - strandat 1064.121 kb on - strandat 1064.197 kb on + strandat 1064.261 kb on + strand, within Sama_0874at 1064.319 kb on - strand, within Sama_0874at 1064.462 kb on + strand, within Sama_0874at 1064.463 kb on - strand, within Sama_0874at 1064.482 kb on - strand, within Sama_0874at 1064.571 kb on + strand, within Sama_0874at 1064.571 kb on + strand, within Sama_0874at 1064.605 kb on + strand, within Sama_0874at 1064.605 kb on + strand, within Sama_0874at 1064.612 kb on + strand, within Sama_0874at 1064.612 kb on + strand, within Sama_0874at 1064.612 kb on + strand, within Sama_0874at 1064.621 kb on - strand, within Sama_0874at 1064.735 kb on + strandat 1064.735 kb on + strandat 1064.735 kb on + strandat 1064.760 kb on + strandat 1064.983 kb on + strand, within Sama_0875at 1064.983 kb on + strand, within Sama_0875at 1064.983 kb on + strand, within Sama_0875at 1064.984 kb on - strand, within Sama_0875at 1064.984 kb on - strand, within Sama_0875at 1064.987 kb on - strand, within Sama_0875at 1064.987 kb on - strand, within Sama_0875at 1065.071 kb on + strand, within Sama_0875at 1065.072 kb on - strand, within Sama_0875at 1065.076 kb on + strand, within Sama_0875at 1065.076 kb on + strand, within Sama_0875at 1065.078 kb on + strand, within Sama_0875at 1065.078 kb on + strand, within Sama_0875at 1065.078 kb on + strand, within Sama_0875at 1065.161 kb on - strand, within Sama_0875at 1065.161 kb on - strand, within Sama_0875at 1065.296 kb on - strand, within Sama_0875at 1065.296 kb on - strand, within Sama_0875at 1065.296 kb on - strand, within Sama_0875at 1065.340 kb on + strandat 1065.380 kb on + strandat 1065.380 kb on + strandat 1065.380 kb on + strandat 1065.530 kb on + strand, within Sama_0876at 1065.530 kb on + strand, within Sama_0876at 1065.530 kb on + strand, within Sama_0876at 1065.530 kb on + strand, within Sama_0876at 1065.530 kb on + strand, within Sama_0876at 1065.530 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.532 kb on + strand, within Sama_0876at 1065.546 kb on + strand, within Sama_0876at 1065.546 kb on + strand, within Sama_0876at 1065.546 kb on + strand, within Sama_0876at 1065.546 kb on + strand, within Sama_0876at 1065.546 kb on + strand, within Sama_0876at 1065.547 kb on - strand, within Sama_0876at 1065.644 kb on + strand, within Sama_0876at 1065.673 kb on + strand, within Sama_0876at 1065.673 kb on + strand, within Sama_0876at 1065.673 kb on + strand, within Sama_0876at 1065.673 kb on + strand, within Sama_0876

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu
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1,063,992 + +0.1
1,063,992 + -0.6
1,063,993 - -2.3
1,063,993 - -0.9
1,063,993 - -2.3
1,064,016 - +1.2
1,064,065 + -0.3
1,064,066 - -3.0
1,064,066 - -1.3
1,064,067 + +0.4
1,064,067 + +1.5
1,064,067 + +0.2
1,064,067 + -0.5
1,064,067 + +0.3
1,064,067 + -1.3
1,064,067 + -1.5
1,064,068 - -1.3
1,064,068 - -2.3
1,064,068 - -1.9
1,064,068 - -2.3
1,064,068 - -2.8
1,064,077 + -0.7
1,064,077 + -0.3
1,064,077 + -1.9
1,064,077 + -0.9
1,064,078 - -2.5
1,064,078 - -0.5
1,064,082 - -2.1
1,064,082 - -3.6
1,064,085 + -1.8
1,064,085 + +1.7
1,064,086 - -0.6
1,064,086 - -1.6
1,064,089 + -0.7
1,064,090 - -2.5
1,064,121 - +0.3
1,064,197 + -1.3
1,064,261 + Sama_0874 0.20 +0.1
1,064,319 - Sama_0874 0.30 -1.6
1,064,462 + Sama_0874 0.55 -2.3
1,064,463 - Sama_0874 0.55 -0.9
1,064,482 - Sama_0874 0.58 -0.3
1,064,571 + Sama_0874 0.74 -1.3
1,064,571 + Sama_0874 0.74 -3.0
1,064,605 + Sama_0874 0.80 -1.3
1,064,605 + Sama_0874 0.80 -3.2
1,064,612 + Sama_0874 0.81 -3.2
1,064,612 + Sama_0874 0.81 -1.9
1,064,612 + Sama_0874 0.81 -2.3
1,064,621 - Sama_0874 0.82 -2.9
1,064,735 + -2.3
1,064,735 + -4.0
1,064,735 + -2.6
1,064,760 + -2.6
1,064,983 + Sama_0875 0.35 -1.3
1,064,983 + Sama_0875 0.35 -1.6
1,064,983 + Sama_0875 0.35 -3.6
1,064,984 - Sama_0875 0.35 -0.9
1,064,984 - Sama_0875 0.35 -2.8
1,064,987 - Sama_0875 0.35 -1.3
1,064,987 - Sama_0875 0.35 -0.3
1,065,071 + Sama_0875 0.49 -1.6
1,065,072 - Sama_0875 0.49 +0.7
1,065,076 + Sama_0875 0.50 -2.3
1,065,076 + Sama_0875 0.50 -1.8
1,065,078 + Sama_0875 0.50 -1.8
1,065,078 + Sama_0875 0.50 -1.6
1,065,078 + Sama_0875 0.50 -0.9
1,065,161 - Sama_0875 0.64 -0.3
1,065,161 - Sama_0875 0.64 -1.3
1,065,296 - Sama_0875 0.87 -2.2
1,065,296 - Sama_0875 0.87 +0.7
1,065,296 - Sama_0875 0.87 -3.1
1,065,340 + -0.9
1,065,380 + -2.3
1,065,380 + -2.1
1,065,380 + -3.0
1,065,530 + Sama_0876 0.16 -2.2
1,065,530 + Sama_0876 0.16 -2.9
1,065,530 + Sama_0876 0.16 -1.9
1,065,530 + Sama_0876 0.16 -3.2
1,065,530 + Sama_0876 0.16 -2.1
1,065,530 + Sama_0876 0.16 -3.6
1,065,532 + Sama_0876 0.16 -2.5
1,065,532 + Sama_0876 0.16 -1.6
1,065,532 + Sama_0876 0.16 -1.9
1,065,532 + Sama_0876 0.16 +1.3
1,065,532 + Sama_0876 0.16 -1.9
1,065,532 + Sama_0876 0.16 -3.5
1,065,532 + Sama_0876 0.16 -2.1
1,065,532 + Sama_0876 0.16 -1.5
1,065,532 + Sama_0876 0.16 -0.9
1,065,532 + Sama_0876 0.16 -2.1
1,065,532 + Sama_0876 0.16 -2.6
1,065,532 + Sama_0876 0.16 -3.1
1,065,532 + Sama_0876 0.16 -3.8
1,065,546 + Sama_0876 0.17 -3.4
1,065,546 + Sama_0876 0.17 +0.1
1,065,546 + Sama_0876 0.17 -3.0
1,065,546 + Sama_0876 0.17 -2.8
1,065,546 + Sama_0876 0.17 -1.5
1,065,547 - Sama_0876 0.17 -0.6
1,065,644 + Sama_0876 0.28 -3.1
1,065,673 + Sama_0876 0.31 -0.6
1,065,673 + Sama_0876 0.31 -1.3
1,065,673 + Sama_0876 0.31 -3.6
1,065,673 + Sama_0876 0.31 -2.4

Or see this region's nucleotide sequence