Strain Fitness in Shewanella amazonensis SB2B around Sama_0171

Experiment: Gly-Glu

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0170 and Sama_0171 are separated by 3 nucleotidesSama_0171 and Sama_0172 are separated by 37 nucleotidesSama_0172 and Sama_0173 are separated by 12 nucleotides Sama_0170: Sama_0170 - general secretion pathway protein E (RefSeq), at 200,369 to 201,931 _0170 Sama_0171: Sama_0171 - general secretion pathway protein F (RefSeq), at 201,935 to 203,158 _0171 Sama_0172: Sama_0172 - general secretion pathway protein G (RefSeq), at 203,196 to 203,627 _0172 Sama_0173: Sama_0173 - general secretion pathway protein H (RefSeq), at 203,640 to 204,209 _0173 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1at 201.026 kb on - strand, within Sama_0170at 201.119 kb on - strand, within Sama_0170at 201.311 kb on + strand, within Sama_0170at 201.325 kb on + strand, within Sama_0170at 201.326 kb on - strand, within Sama_0170at 201.327 kb on + strand, within Sama_0170at 201.328 kb on - strand, within Sama_0170at 201.470 kb on - strand, within Sama_0170at 201.521 kb on - strand, within Sama_0170at 201.521 kb on - strand, within Sama_0170at 201.582 kb on + strand, within Sama_0170at 201.600 kb on + strand, within Sama_0170at 201.622 kb on + strand, within Sama_0170at 201.790 kb on + strandat 201.791 kb on - strandat 201.907 kb on - strandat 201.907 kb on - strandat 201.929 kb on + strandat 202.283 kb on + strand, within Sama_0171at 202.284 kb on - strand, within Sama_0171at 202.343 kb on - strand, within Sama_0171at 202.343 kb on - strand, within Sama_0171at 202.571 kb on - strand, within Sama_0171at 202.608 kb on - strand, within Sama_0171at 202.617 kb on + strand, within Sama_0171at 202.843 kb on - strand, within Sama_0171at 202.946 kb on + strand, within Sama_0171at 202.946 kb on + strand, within Sama_0171at 202.947 kb on - strand, within Sama_0171at 202.949 kb on - strand, within Sama_0171at 203.101 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.160 kb on + strandat 203.160 kb on + strandat 203.160 kb on + strandat 203.178 kb on + strandat 203.178 kb on + strandat 203.178 kb on + strandat 203.179 kb on - strandat 203.419 kb on + strand, within Sama_0172at 203.453 kb on + strand, within Sama_0172at 203.512 kb on - strand, within Sama_0172at 203.571 kb on - strand, within Sama_0172at 203.594 kb on + strandat 203.620 kb on - strandat 203.625 kb on + strandat 203.625 kb on + strandat 203.625 kb on + strandat 203.626 kb on - strandat 203.665 kb on + strandat 203.687 kb on - strandat 203.849 kb on + strand, within Sama_0173at 203.850 kb on - strand, within Sama_0173at 203.853 kb on + strand, within Sama_0173at 203.854 kb on - strand, within Sama_0173at 203.859 kb on + strand, within Sama_0173at 203.860 kb on - strand, within Sama_0173at 203.868 kb on + strand, within Sama_0173at 203.942 kb on + strand, within Sama_0173at 204.015 kb on - strand, within Sama_0173at 204.070 kb on + strand, within Sama_0173

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu
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201,026 - Sama_0170 0.42 -1.2
201,119 - Sama_0170 0.48 +0.9
201,311 + Sama_0170 0.60 -0.9
201,325 + Sama_0170 0.61 -1.5
201,326 - Sama_0170 0.61 +1.1
201,327 + Sama_0170 0.61 -1.7
201,328 - Sama_0170 0.61 -1.9
201,470 - Sama_0170 0.70 -0.9
201,521 - Sama_0170 0.74 -0.9
201,521 - Sama_0170 0.74 -0.9
201,582 + Sama_0170 0.78 -0.7
201,600 + Sama_0170 0.79 -2.6
201,622 + Sama_0170 0.80 -0.5
201,790 + +0.6
201,791 - +1.3
201,907 - -2.3
201,907 - +0.4
201,929 + +0.1
202,283 + Sama_0171 0.28 -2.0
202,284 - Sama_0171 0.29 +0.5
202,343 - Sama_0171 0.33 -1.9
202,343 - Sama_0171 0.33 +0.1
202,571 - Sama_0171 0.52 -1.5
202,608 - Sama_0171 0.55 -2.2
202,617 + Sama_0171 0.56 +0.5
202,843 - Sama_0171 0.74 -2.0
202,946 + Sama_0171 0.83 -1.9
202,946 + Sama_0171 0.83 +0.5
202,947 - Sama_0171 0.83 -1.7
202,949 - Sama_0171 0.83 -3.1
203,101 + -0.2
203,156 + +0.1
203,156 + -0.2
203,156 + -0.2
203,156 + -0.9
203,156 + -0.6
203,156 + -1.2
203,160 + -0.3
203,160 + -0.1
203,160 + -0.1
203,178 + +0.2
203,178 + -0.4
203,178 + -1.7
203,179 - -1.9
203,419 + Sama_0172 0.52 -2.0
203,453 + Sama_0172 0.59 -2.0
203,512 - Sama_0172 0.73 -1.7
203,571 - Sama_0172 0.87 -1.7
203,594 + -2.0
203,620 - -1.5
203,625 + -0.4
203,625 + +0.6
203,625 + -0.7
203,626 - -0.9
203,665 + -1.7
203,687 - -1.7
203,849 + Sama_0173 0.37 -2.3
203,850 - Sama_0173 0.37 -0.5
203,853 + Sama_0173 0.37 -1.7
203,854 - Sama_0173 0.38 -1.9
203,859 + Sama_0173 0.38 -1.5
203,860 - Sama_0173 0.39 -0.5
203,868 + Sama_0173 0.40 -0.1
203,942 + Sama_0173 0.53 -1.7
204,015 - Sama_0173 0.66 -1.2
204,070 + Sama_0173 0.75 -0.9

Or see this region's nucleotide sequence