Experiment: Gly-Glu
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and Sama_0041 are separated by 17 nucleotides Sama_0041 and Sama_0042 overlap by 1 nucleotides Sama_0042 and def are separated by 15 nucleotides
Sama_0040: trkA - potassium transporter peripheral membrane component (RefSeq), at 43,378 to 44,787
trkA
Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088
_0041
Sama_0042: Sama_0042 - methionyl-tRNA formyltransferase (RefSeq), at 46,088 to 47,050
_0042
Sama_0043: def - peptide deformylase (RefSeq), at 47,066 to 47,569
def
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.799 kb on - strand at 44.836 kb on + strand at 44.837 kb on - strand at 44.837 kb on - strand at 44.837 kb on - strand at 44.883 kb on - strand at 44.889 kb on - strand at 44.889 kb on - strand at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.018 kb on - strand, within Sama_0041 at 45.357 kb on + strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.513 kb on + strand, within Sama_0041 at 45.514 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.575 kb on + strand, within Sama_0041 at 45.576 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.676 kb on + strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.725 kb on + strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.855 kb on + strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.952 kb on + strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 46.082 kb on + strand at 46.083 kb on - strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.090 kb on - strand at 46.090 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu remove 44,799 - -0.9 44,836 + -1.2 44,837 - -0.1 44,837 - -0.8 44,837 - +0.5 44,883 - +0.1 44,889 - +1.9 44,889 - +0.6 45,018 - Sama_0041 0.17 -0.0 45,018 - Sama_0041 0.17 +0.1 45,018 - Sama_0041 0.17 +0.1 45,018 - Sama_0041 0.17 +0.7 45,018 - Sama_0041 0.17 -0.9 45,018 - Sama_0041 0.17 -0.6 45,018 - Sama_0041 0.17 -0.7 45,357 + Sama_0041 0.43 -0.9 45,358 - Sama_0041 0.43 -0.8 45,358 - Sama_0041 0.43 -0.4 45,358 - Sama_0041 0.43 -1.1 45,513 + Sama_0041 0.55 -0.2 45,514 - Sama_0041 0.55 +0.6 45,542 - Sama_0041 0.57 -1.1 45,542 - Sama_0041 0.57 +0.6 45,542 - Sama_0041 0.57 -0.4 45,542 - Sama_0041 0.57 -0.9 45,575 + Sama_0041 0.60 -1.7 45,576 - Sama_0041 0.60 -0.7 45,610 - Sama_0041 0.63 -2.2 45,610 - Sama_0041 0.63 +0.9 45,610 - Sama_0041 0.63 +0.1 45,610 - Sama_0041 0.63 -0.4 45,610 - Sama_0041 0.63 -1.2 45,610 - Sama_0041 0.63 +1.1 45,610 - Sama_0041 0.63 -0.3 45,675 - Sama_0041 0.68 -0.9 45,675 - Sama_0041 0.68 -0.9 45,676 + Sama_0041 0.68 -2.6 45,677 - Sama_0041 0.68 -0.6 45,677 - Sama_0041 0.68 -0.9 45,677 - Sama_0041 0.68 -0.6 45,725 + Sama_0041 0.72 -2.1 45,726 - Sama_0041 0.72 -0.4 45,726 - Sama_0041 0.72 -1.4 45,726 - Sama_0041 0.72 -0.6 45,726 - Sama_0041 0.72 -0.6 45,753 + Sama_0041 0.74 -0.9 45,753 + Sama_0041 0.74 -0.4 45,753 + Sama_0041 0.74 -1.7 45,753 + Sama_0041 0.74 -1.0 45,832 + Sama_0041 0.80 -1.3 45,832 + Sama_0041 0.80 -0.9 45,832 + Sama_0041 0.80 -0.6 45,832 + Sama_0041 0.80 -0.4 45,832 + Sama_0041 0.80 -1.6 45,833 - Sama_0041 0.80 -0.9 45,833 - Sama_0041 0.80 -1.3 45,833 - Sama_0041 0.80 -1.2 45,841 + Sama_0041 0.81 -3.7 45,841 + Sama_0041 0.81 -0.2 45,841 + Sama_0041 0.81 -0.9 45,855 + Sama_0041 0.82 -1.4 45,856 - Sama_0041 0.82 +0.5 45,856 - Sama_0041 0.82 -0.4 45,856 - Sama_0041 0.82 -1.6 45,856 - Sama_0041 0.82 -1.7 45,902 + Sama_0041 0.85 -0.6 45,902 + Sama_0041 0.85 -1.2 45,902 + Sama_0041 0.85 -2.3 45,902 + Sama_0041 0.85 -1.7 45,902 + Sama_0041 0.85 +0.1 45,902 + Sama_0041 0.85 -1.3 45,902 + Sama_0041 0.85 -2.0 45,903 - Sama_0041 0.86 +0.1 45,903 - Sama_0041 0.86 +0.1 45,903 - Sama_0041 0.86 -0.9 45,903 - Sama_0041 0.86 -0.2 45,903 - Sama_0041 0.86 +1.1 45,903 - Sama_0041 0.86 +0.1 45,903 - Sama_0041 0.86 -0.9 45,903 - Sama_0041 0.86 -2.3 45,904 + Sama_0041 0.86 +0.6 45,904 + Sama_0041 0.86 -1.4 45,904 + Sama_0041 0.86 -1.8 45,904 + Sama_0041 0.86 -0.9 45,904 + Sama_0041 0.86 -2.0 45,904 + Sama_0041 0.86 -1.1 45,904 + Sama_0041 0.86 -3.1 45,904 + Sama_0041 0.86 -1.8 45,905 - Sama_0041 0.86 -0.3 45,905 - Sama_0041 0.86 -1.2 45,905 - Sama_0041 0.86 -0.6 45,905 - Sama_0041 0.86 -1.4 45,905 - Sama_0041 0.86 -1.6 45,905 - Sama_0041 0.86 -2.0 45,905 - Sama_0041 0.86 -0.6 45,952 + Sama_0041 0.89 -0.7 45,953 - Sama_0041 0.89 +0.6 45,953 - Sama_0041 0.89 +0.1 46,082 + +1.7 46,083 - +0.6 46,089 + -1.4 46,089 + -1.9 46,089 + +0.6 46,090 - -2.2 46,090 - -0.8 47,068 - +0.7 47,068 - -0.3 47,068 - -0.1 47,068 - +1.1 47,068 - -0.4 47,068 - -0.2 47,068 - -0.5
Or see this region's nucleotide sequence