Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0848

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0847 and Psest_0848 are separated by 231 nucleotidesPsest_0848 and Psest_0849 are separated by 98 nucleotides Psest_0847: Psest_0847 - drug resistance transporter, EmrB/QacA subfamily, at 916,617 to 918,044 _0847 Psest_0848: Psest_0848 - hypothetical protein, at 918,276 to 918,536 _0848 Psest_0849: Psest_0849 - 6-phosphogluconate dehydratase, at 918,635 to 920,461 _0849 Position (kb) 918 919Strain fitness (log2 ratio) -1 0 1 2at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.312 kb on - strand, within Psest_0847at 918.301 kb on + strandat 918.337 kb on + strand, within Psest_0848at 918.343 kb on + strand, within Psest_0848at 918.344 kb on - strand, within Psest_0848at 918.344 kb on - strand, within Psest_0848at 918.505 kb on + strand, within Psest_0848at 918.505 kb on + strand, within Psest_0848at 918.506 kb on - strand, within Psest_0848at 918.506 kb on - strand, within Psest_0848at 918.702 kb on - strandat 918.855 kb on - strand, within Psest_0849at 919.277 kb on + strand, within Psest_0849at 919.277 kb on + strand, within Psest_0849at 919.304 kb on + strand, within Psest_0849

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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917,294 + Psest_0847 0.47 -1.0
917,294 + Psest_0847 0.47 +0.6
917,294 + Psest_0847 0.47 -0.7
917,294 + Psest_0847 0.47 +0.8
917,294 + Psest_0847 0.47 +1.0
917,294 + Psest_0847 0.47 -0.6
917,294 + Psest_0847 0.47 -1.4
917,294 + Psest_0847 0.47 +0.6
917,294 + Psest_0847 0.47 +0.3
917,294 + Psest_0847 0.47 -1.2
917,294 + Psest_0847 0.47 -0.4
917,294 + Psest_0847 0.47 -0.1
917,294 + Psest_0847 0.47 +0.4
917,294 + Psest_0847 0.47 +1.9
917,294 + Psest_0847 0.47 -0.5
917,294 + Psest_0847 0.47 -0.6
917,294 + Psest_0847 0.47 -0.4
917,294 + Psest_0847 0.47 -0.3
917,294 + Psest_0847 0.47 -1.2
917,294 + Psest_0847 0.47 -1.4
917,294 + Psest_0847 0.47 +0.6
917,294 + Psest_0847 0.47 +0.3
917,294 + Psest_0847 0.47 -0.1
917,294 + Psest_0847 0.47 -0.8
917,294 + Psest_0847 0.47 +0.2
917,294 + Psest_0847 0.47 +0.6
917,294 + Psest_0847 0.47 +1.6
917,294 + Psest_0847 0.47 -1.0
917,294 + Psest_0847 0.47 -1.7
917,294 + Psest_0847 0.47 -0.4
917,295 - Psest_0847 0.47 +0.0
917,295 - Psest_0847 0.47 +0.8
917,295 - Psest_0847 0.47 -1.0
917,295 - Psest_0847 0.47 +0.8
917,295 - Psest_0847 0.47 +1.6
917,295 - Psest_0847 0.47 -1.0
917,295 - Psest_0847 0.47 -0.2
917,295 - Psest_0847 0.47 +0.3
917,295 - Psest_0847 0.47 -0.3
917,295 - Psest_0847 0.47 -1.4
917,295 - Psest_0847 0.47 -0.8
917,312 - Psest_0847 0.49 -0.4
918,301 + +0.2
918,337 + Psest_0848 0.23 +1.6
918,343 + Psest_0848 0.26 +1.6
918,344 - Psest_0848 0.26 -0.7
918,344 - Psest_0848 0.26 -0.3
918,505 + Psest_0848 0.88 -0.6
918,505 + Psest_0848 0.88 +0.2
918,506 - Psest_0848 0.88 -0.6
918,506 - Psest_0848 0.88 -1.6
918,702 - -0.3
918,855 - Psest_0849 0.12 -0.4
919,277 + Psest_0849 0.35 +0.0
919,277 + Psest_0849 0.35 -0.4
919,304 + Psest_0849 0.37 +0.2

Or see this region's nucleotide sequence