Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2664 and Psest_2665 are separated by 54 nucleotides Psest_2665 and Psest_2666 are separated by 20 nucleotides Psest_2666 and Psest_2667 are separated by 122 nucleotides
Psest_2664: Psest_2664 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,851,496 to 2,852,485
_2664
Psest_2665: Psest_2665 - Citrate lyase beta subunit, at 2,852,540 to 2,853,367
_2665
Psest_2666: Psest_2666 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,853,388 to 2,854,593
_2666
Psest_2667: Psest_2667 - Uncharacterized protein involved in propionate catabolism, at 2,854,716 to 2,856,068
_2667
Position (kb)
2853
2854
2855 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2852.476 kb on + strand at 2852.476 kb on + strand at 2852.491 kb on + strand at 2852.515 kb on + strand at 2853.703 kb on - strand, within Psest_2666 at 2853.873 kb on - strand, within Psest_2666 at 2853.878 kb on + strand, within Psest_2666 at 2853.878 kb on + strand, within Psest_2666 at 2853.879 kb on - strand, within Psest_2666 at 2853.879 kb on - strand, within Psest_2666 at 2853.929 kb on + strand, within Psest_2666 at 2853.930 kb on - strand, within Psest_2666 at 2853.935 kb on + strand, within Psest_2666 at 2853.938 kb on + strand, within Psest_2666 at 2853.938 kb on + strand, within Psest_2666 at 2853.938 kb on + strand, within Psest_2666 at 2853.939 kb on - strand, within Psest_2666 at 2853.939 kb on - strand, within Psest_2666 at 2853.939 kb on - strand, within Psest_2666 at 2853.947 kb on + strand, within Psest_2666 at 2854.047 kb on - strand, within Psest_2666 at 2854.047 kb on - strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.053 kb on - strand, within Psest_2666 at 2854.053 kb on - strand, within Psest_2666 at 2854.164 kb on - strand, within Psest_2666 at 2854.182 kb on - strand, within Psest_2666 at 2854.711 kb on + strand at 2855.003 kb on + strand, within Psest_2667 at 2855.003 kb on + strand, within Psest_2667 at 2855.004 kb on - strand, within Psest_2667 at 2855.004 kb on - strand, within Psest_2667 at 2855.004 kb on - strand, within Psest_2667 at 2855.007 kb on + strand, within Psest_2667 at 2855.007 kb on + strand, within Psest_2667
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,852,476 + +0.1 2,852,476 + -1.8 2,852,491 + -0.9 2,852,515 + +1.1 2,853,703 - Psest_2666 0.26 +0.5 2,853,873 - Psest_2666 0.40 +0.5 2,853,878 + Psest_2666 0.41 +1.5 2,853,878 + Psest_2666 0.41 +0.6 2,853,879 - Psest_2666 0.41 +1.1 2,853,879 - Psest_2666 0.41 +0.5 2,853,929 + Psest_2666 0.45 +0.1 2,853,930 - Psest_2666 0.45 +0.8 2,853,935 + Psest_2666 0.45 +1.5 2,853,938 + Psest_2666 0.46 -0.5 2,853,938 + Psest_2666 0.46 +1.0 2,853,938 + Psest_2666 0.46 -2.1 2,853,939 - Psest_2666 0.46 +5.2 2,853,939 - Psest_2666 0.46 +2.5 2,853,939 - Psest_2666 0.46 +0.1 2,853,947 + Psest_2666 0.46 -0.5 2,854,047 - Psest_2666 0.55 -0.3 2,854,047 - Psest_2666 0.55 -0.5 2,854,052 + Psest_2666 0.55 +1.1 2,854,052 + Psest_2666 0.55 +0.4 2,854,052 + Psest_2666 0.55 +0.5 2,854,052 + Psest_2666 0.55 -0.8 2,854,052 + Psest_2666 0.55 -2.7 2,854,052 + Psest_2666 0.55 +0.2 2,854,052 + Psest_2666 0.55 +0.2 2,854,052 + Psest_2666 0.55 -0.5 2,854,052 + Psest_2666 0.55 -0.2 2,854,052 + Psest_2666 0.55 +0.9 2,854,052 + Psest_2666 0.55 -2.0 2,854,052 + Psest_2666 0.55 +2.1 2,854,053 - Psest_2666 0.55 +0.5 2,854,053 - Psest_2666 0.55 +1.0 2,854,164 - Psest_2666 0.64 +0.1 2,854,182 - Psest_2666 0.66 -0.2 2,854,711 + +0.4 2,855,003 + Psest_2667 0.21 +1.2 2,855,003 + Psest_2667 0.21 +0.5 2,855,004 - Psest_2667 0.21 +1.1 2,855,004 - Psest_2667 0.21 +0.1 2,855,004 - Psest_2667 0.21 -1.1 2,855,007 + Psest_2667 0.22 +0.5 2,855,007 + Psest_2667 0.22 -0.1
Or see this region's nucleotide sequence