Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00940

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00920 and PGA1_c00930 overlap by 4 nucleotidesPGA1_c00930 and PGA1_c00940 overlap by 8 nucleotidesPGA1_c00940 and PGA1_c00950 overlap by 4 nucleotidesPGA1_c00950 and PGA1_c00960 overlap by 4 nucleotides PGA1_c00920: PGA1_c00920 - putative transporter, required for glycine utilization (from data), at 88,992 to 89,615 _c00920 PGA1_c00930: PGA1_c00930 - ribonuclease H, at 89,612 to 90,079 _c00930 PGA1_c00940: PGA1_c00940 - putative methyltransferase, at 90,072 to 90,671 _c00940 PGA1_c00950: PGA1_c00950 - Protein of unknown function (DUF3429)., at 90,668 to 91,120 _c00950 PGA1_c00960: PGA1_c00960 - lysE type translocator-like protein, at 91,117 to 91,734 _c00960 Position (kb) 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 89.072 kb on + strand, within PGA1_c00920at 89.078 kb on - strand, within PGA1_c00920at 89.080 kb on - strand, within PGA1_c00920at 89.082 kb on + strand, within PGA1_c00920at 89.082 kb on + strand, within PGA1_c00920at 89.082 kb on + strand, within PGA1_c00920at 89.088 kb on - strand, within PGA1_c00920at 89.116 kb on - strand, within PGA1_c00920at 89.116 kb on - strand, within PGA1_c00920at 89.139 kb on - strand, within PGA1_c00920at 89.186 kb on - strand, within PGA1_c00920at 89.188 kb on + strand, within PGA1_c00920at 89.271 kb on + strand, within PGA1_c00920at 89.271 kb on + strand, within PGA1_c00920at 89.271 kb on + strand, within PGA1_c00920at 89.279 kb on - strand, within PGA1_c00920at 89.302 kb on - strand, within PGA1_c00920at 89.306 kb on - strand, within PGA1_c00920at 89.369 kb on - strand, within PGA1_c00920at 89.445 kb on - strand, within PGA1_c00920at 89.558 kb on + strandat 89.558 kb on + strandat 89.576 kb on + strandat 89.579 kb on + strandat 89.600 kb on + strandat 89.609 kb on - strandat 89.639 kb on - strandat 89.640 kb on - strandat 89.647 kb on + strandat 89.826 kb on - strand, within PGA1_c00930at 90.097 kb on - strandat 90.112 kb on - strandat 90.136 kb on + strand, within PGA1_c00940at 90.142 kb on + strand, within PGA1_c00940at 90.144 kb on - strand, within PGA1_c00940at 90.205 kb on + strand, within PGA1_c00940at 90.205 kb on + strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.213 kb on - strand, within PGA1_c00940at 90.215 kb on + strand, within PGA1_c00940at 90.215 kb on + strand, within PGA1_c00940at 90.215 kb on + strand, within PGA1_c00940at 90.223 kb on - strand, within PGA1_c00940at 90.223 kb on - strand, within PGA1_c00940at 90.223 kb on - strand, within PGA1_c00940at 90.223 kb on - strand, within PGA1_c00940at 90.223 kb on - strand, within PGA1_c00940at 90.240 kb on - strand, within PGA1_c00940at 90.249 kb on + strand, within PGA1_c00940at 90.259 kb on + strand, within PGA1_c00940at 90.259 kb on + strand, within PGA1_c00940at 90.287 kb on - strand, within PGA1_c00940at 90.351 kb on + strand, within PGA1_c00940at 90.367 kb on - strand, within PGA1_c00940at 90.397 kb on - strand, within PGA1_c00940at 90.408 kb on + strand, within PGA1_c00940at 90.473 kb on + strand, within PGA1_c00940at 90.497 kb on - strand, within PGA1_c00940at 90.499 kb on + strand, within PGA1_c00940at 90.507 kb on - strand, within PGA1_c00940at 90.530 kb on - strand, within PGA1_c00940at 90.559 kb on - strand, within PGA1_c00940at 90.601 kb on + strand, within PGA1_c00940at 90.674 kb on - strandat 90.677 kb on - strandat 90.681 kb on + strandat 90.686 kb on + strandat 90.689 kb on - strandat 90.689 kb on - strandat 90.711 kb on - strandat 90.738 kb on - strand, within PGA1_c00950at 90.773 kb on + strand, within PGA1_c00950at 90.773 kb on + strand, within PGA1_c00950at 90.781 kb on - strand, within PGA1_c00950at 90.824 kb on + strand, within PGA1_c00950at 90.824 kb on + strand, within PGA1_c00950at 90.824 kb on + strand, within PGA1_c00950at 90.824 kb on + strand, within PGA1_c00950at 90.832 kb on - strand, within PGA1_c00950at 90.878 kb on + strand, within PGA1_c00950at 90.878 kb on + strand, within PGA1_c00950at 90.879 kb on + strand, within PGA1_c00950at 90.963 kb on + strand, within PGA1_c00950at 90.971 kb on - strand, within PGA1_c00950at 91.025 kb on - strand, within PGA1_c00950at 91.025 kb on - strand, within PGA1_c00950at 91.032 kb on + strand, within PGA1_c00950at 91.040 kb on - strand, within PGA1_c00950at 91.051 kb on + strand, within PGA1_c00950at 91.056 kb on + strand, within PGA1_c00950at 91.077 kb on - strandat 91.077 kb on - strandat 91.079 kb on + strandat 91.123 kb on - strandat 91.238 kb on + strand, within PGA1_c00960at 91.264 kb on + strand, within PGA1_c00960at 91.264 kb on + strand, within PGA1_c00960at 91.264 kb on + strand, within PGA1_c00960at 91.264 kb on + strand, within PGA1_c00960at 91.264 kb on + strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.272 kb on - strand, within PGA1_c00960at 91.284 kb on + strand, within PGA1_c00960at 91.368 kb on + strand, within PGA1_c00960at 91.368 kb on + strand, within PGA1_c00960at 91.402 kb on - strand, within PGA1_c00960at 91.523 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.536 kb on + strand, within PGA1_c00960at 91.538 kb on + strand, within PGA1_c00960at 91.544 kb on - strand, within PGA1_c00960at 91.544 kb on - strand, within PGA1_c00960at 91.544 kb on - strand, within PGA1_c00960at 91.544 kb on - strand, within PGA1_c00960at 91.544 kb on - strand, within PGA1_c00960at 91.551 kb on - strand, within PGA1_c00960at 91.551 kb on - strand, within PGA1_c00960at 91.554 kb on - strand, within PGA1_c00960at 91.554 kb on - strand, within PGA1_c00960at 91.632 kb on - strand, within PGA1_c00960at 91.639 kb on + strand, within PGA1_c00960at 91.644 kb on + strand, within PGA1_c00960at 91.644 kb on + strand, within PGA1_c00960at 91.656 kb on + strand, within PGA1_c00960at 91.664 kb on + strand, within PGA1_c00960at 91.664 kb on + strand, within PGA1_c00960

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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89,072 + PGA1_c00920 0.13 +1.3
89,078 - PGA1_c00920 0.14 -0.5
89,080 - PGA1_c00920 0.14 +0.2
89,082 + PGA1_c00920 0.14 +1.2
89,082 + PGA1_c00920 0.14 +1.4
89,082 + PGA1_c00920 0.14 +0.3
89,088 - PGA1_c00920 0.15 +0.8
89,116 - PGA1_c00920 0.20 +0.5
89,116 - PGA1_c00920 0.20 +0.8
89,139 - PGA1_c00920 0.24 +0.3
89,186 - PGA1_c00920 0.31 +0.4
89,188 + PGA1_c00920 0.31 -0.6
89,271 + PGA1_c00920 0.45 +0.2
89,271 + PGA1_c00920 0.45 +0.3
89,271 + PGA1_c00920 0.45 +0.5
89,279 - PGA1_c00920 0.46 -0.4
89,302 - PGA1_c00920 0.50 +0.9
89,306 - PGA1_c00920 0.50 -0.5
89,369 - PGA1_c00920 0.60 -0.1
89,445 - PGA1_c00920 0.73 -0.8
89,558 + -3.3
89,558 + -1.0
89,576 + -0.4
89,579 + -1.6
89,600 + +0.9
89,609 - +1.3
89,639 - +0.8
89,640 - +0.9
89,647 + -1.7
89,826 - PGA1_c00930 0.46 -1.0
90,097 - +1.3
90,112 - +2.4
90,136 + PGA1_c00940 0.11 +0.3
90,142 + PGA1_c00940 0.12 -0.6
90,144 - PGA1_c00940 0.12 +0.7
90,205 + PGA1_c00940 0.22 +0.0
90,205 + PGA1_c00940 0.22 -0.9
90,213 - PGA1_c00940 0.23 +0.2
90,213 - PGA1_c00940 0.23 -1.8
90,213 - PGA1_c00940 0.23 -2.0
90,213 - PGA1_c00940 0.23 -0.4
90,213 - PGA1_c00940 0.23 +0.4
90,213 - PGA1_c00940 0.23 +0.0
90,213 - PGA1_c00940 0.23 +0.5
90,213 - PGA1_c00940 0.23 -1.4
90,215 + PGA1_c00940 0.24 +0.3
90,215 + PGA1_c00940 0.24 -0.2
90,215 + PGA1_c00940 0.24 -0.8
90,223 - PGA1_c00940 0.25 -1.1
90,223 - PGA1_c00940 0.25 -0.2
90,223 - PGA1_c00940 0.25 -0.6
90,223 - PGA1_c00940 0.25 +0.6
90,223 - PGA1_c00940 0.25 -0.8
90,240 - PGA1_c00940 0.28 +0.1
90,249 + PGA1_c00940 0.29 +1.4
90,259 + PGA1_c00940 0.31 -0.6
90,259 + PGA1_c00940 0.31 +0.2
90,287 - PGA1_c00940 0.36 -0.8
90,351 + PGA1_c00940 0.47 +0.3
90,367 - PGA1_c00940 0.49 -1.7
90,397 - PGA1_c00940 0.54 +1.7
90,408 + PGA1_c00940 0.56 -1.3
90,473 + PGA1_c00940 0.67 -1.1
90,497 - PGA1_c00940 0.71 -0.9
90,499 + PGA1_c00940 0.71 -0.6
90,507 - PGA1_c00940 0.72 -0.3
90,530 - PGA1_c00940 0.76 -0.3
90,559 - PGA1_c00940 0.81 -0.3
90,601 + PGA1_c00940 0.88 -0.6
90,674 - +1.3
90,677 - +0.1
90,681 + +0.8
90,686 + +0.1
90,689 - +0.2
90,689 - +1.3
90,711 - +0.7
90,738 - PGA1_c00950 0.15 -0.4
90,773 + PGA1_c00950 0.23 +1.2
90,773 + PGA1_c00950 0.23 -0.1
90,781 - PGA1_c00950 0.25 -0.6
90,824 + PGA1_c00950 0.34 -0.1
90,824 + PGA1_c00950 0.34 +1.4
90,824 + PGA1_c00950 0.34 +0.4
90,824 + PGA1_c00950 0.34 +1.7
90,832 - PGA1_c00950 0.36 -0.8
90,878 + PGA1_c00950 0.46 +0.8
90,878 + PGA1_c00950 0.46 -1.7
90,879 + PGA1_c00950 0.47 +0.5
90,963 + PGA1_c00950 0.65 -0.4
90,971 - PGA1_c00950 0.67 -1.0
91,025 - PGA1_c00950 0.79 -0.8
91,025 - PGA1_c00950 0.79 +0.3
91,032 + PGA1_c00950 0.80 +1.0
91,040 - PGA1_c00950 0.82 -0.6
91,051 + PGA1_c00950 0.85 -1.6
91,056 + PGA1_c00950 0.86 -0.9
91,077 - -0.5
91,077 - +0.5
91,079 + -1.6
91,123 - -3.1
91,238 + PGA1_c00960 0.20 +0.4
91,264 + PGA1_c00960 0.24 -3.4
91,264 + PGA1_c00960 0.24 -1.6
91,264 + PGA1_c00960 0.24 -0.2
91,264 + PGA1_c00960 0.24 -0.2
91,264 + PGA1_c00960 0.24 +0.3
91,272 - PGA1_c00960 0.25 +0.4
91,272 - PGA1_c00960 0.25 +0.7
91,272 - PGA1_c00960 0.25 -0.1
91,272 - PGA1_c00960 0.25 -0.6
91,272 - PGA1_c00960 0.25 +1.0
91,272 - PGA1_c00960 0.25 +0.0
91,272 - PGA1_c00960 0.25 +0.7
91,272 - PGA1_c00960 0.25 -0.9
91,272 - PGA1_c00960 0.25 -1.6
91,272 - PGA1_c00960 0.25 +1.4
91,284 + PGA1_c00960 0.27 -1.5
91,368 + PGA1_c00960 0.41 -2.0
91,368 + PGA1_c00960 0.41 +0.0
91,402 - PGA1_c00960 0.46 +1.0
91,523 + PGA1_c00960 0.66 +0.8
91,536 + PGA1_c00960 0.68 +0.5
91,536 + PGA1_c00960 0.68 -0.3
91,536 + PGA1_c00960 0.68 -0.6
91,536 + PGA1_c00960 0.68 +3.5
91,536 + PGA1_c00960 0.68 -0.4
91,536 + PGA1_c00960 0.68 +0.0
91,536 + PGA1_c00960 0.68 -0.2
91,536 + PGA1_c00960 0.68 +0.4
91,536 + PGA1_c00960 0.68 -0.5
91,538 + PGA1_c00960 0.68 +1.5
91,544 - PGA1_c00960 0.69 +0.4
91,544 - PGA1_c00960 0.69 -0.1
91,544 - PGA1_c00960 0.69 +1.0
91,544 - PGA1_c00960 0.69 +2.9
91,544 - PGA1_c00960 0.69 -1.0
91,551 - PGA1_c00960 0.70 -2.4
91,551 - PGA1_c00960 0.70 -0.5
91,554 - PGA1_c00960 0.71 -0.5
91,554 - PGA1_c00960 0.71 -1.6
91,632 - PGA1_c00960 0.83 -0.1
91,639 + PGA1_c00960 0.84 -0.5
91,644 + PGA1_c00960 0.85 +1.2
91,644 + PGA1_c00960 0.85 +1.2
91,656 + PGA1_c00960 0.87 +4.2
91,664 + PGA1_c00960 0.89 -0.7
91,664 + PGA1_c00960 0.89 -1.2

Or see this region's nucleotide sequence