Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09310

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09290 and PGA1_c09300 are separated by 176 nucleotidesPGA1_c09300 and PGA1_c09310 are separated by 101 nucleotidesPGA1_c09310 and PGA1_c09320 are separated by 98 nucleotidesPGA1_c09320 and PGA1_c09330 are separated by 1 nucleotides PGA1_c09290: PGA1_c09290 - WGR domain., at 950,660 to 950,911 _c09290 PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624 _c09300 PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457 _c09310 PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194 _c09320 PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783 _c09330 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1 2 3at 950.781 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.810 kb on - strand, within PGA1_c09290at 950.812 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.954 kb on + strandat 950.954 kb on + strandat 950.954 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.969 kb on + strandat 951.032 kb on - strandat 951.094 kb on - strandat 951.190 kb on + strand, within PGA1_c09300at 951.190 kb on + strand, within PGA1_c09300at 951.193 kb on - strand, within PGA1_c09300at 951.195 kb on + strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.203 kb on + strand, within PGA1_c09300at 951.203 kb on - strand, within PGA1_c09300at 951.203 kb on - strand, within PGA1_c09300at 951.219 kb on + strand, within PGA1_c09300at 951.230 kb on + strand, within PGA1_c09300at 951.230 kb on + strand, within PGA1_c09300at 951.238 kb on - strand, within PGA1_c09300at 951.267 kb on + strand, within PGA1_c09300at 951.275 kb on - strand, within PGA1_c09300at 951.320 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.368 kb on + strand, within PGA1_c09300at 951.371 kb on - strand, within PGA1_c09300at 951.394 kb on + strand, within PGA1_c09300at 951.402 kb on - strand, within PGA1_c09300at 951.527 kb on + strand, within PGA1_c09300at 951.540 kb on - strand, within PGA1_c09300at 951.556 kb on - strand, within PGA1_c09300at 951.589 kb on + strandat 951.589 kb on + strandat 951.589 kb on + strandat 951.594 kb on + strandat 951.597 kb on - strandat 951.597 kb on - strandat 951.628 kb on - strandat 951.632 kb on + strandat 951.679 kb on + strandat 951.739 kb on - strandat 951.742 kb on + strandat 951.747 kb on - strandat 951.783 kb on - strandat 951.797 kb on + strandat 951.797 kb on + strandat 951.839 kb on - strand, within PGA1_c09310at 951.842 kb on + strand, within PGA1_c09310at 951.882 kb on + strand, within PGA1_c09310at 951.895 kb on - strand, within PGA1_c09310at 951.895 kb on - strand, within PGA1_c09310at 951.910 kb on + strand, within PGA1_c09310at 951.918 kb on - strand, within PGA1_c09310at 951.984 kb on + strand, within PGA1_c09310at 951.990 kb on + strand, within PGA1_c09310at 951.990 kb on + strand, within PGA1_c09310at 952.018 kb on - strand, within PGA1_c09310at 952.066 kb on - strand, within PGA1_c09310at 952.125 kb on - strand, within PGA1_c09310at 952.193 kb on + strand, within PGA1_c09310at 952.214 kb on + strand, within PGA1_c09310at 952.331 kb on + strand, within PGA1_c09310at 952.353 kb on + strand, within PGA1_c09310at 952.381 kb on + strand, within PGA1_c09310at 952.389 kb on + strandat 952.412 kb on + strandat 952.412 kb on + strandat 952.413 kb on + strandat 952.413 kb on + strandat 952.420 kb on - strandat 952.420 kb on - strandat 952.425 kb on + strandat 952.425 kb on + strandat 952.450 kb on + strandat 952.452 kb on + strandat 952.469 kb on + strandat 952.523 kb on - strandat 952.523 kb on - strandat 952.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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950,781 + PGA1_c09290 0.48 -0.0
950,802 + PGA1_c09290 0.56 +0.9
950,802 + PGA1_c09290 0.56 +2.6
950,810 - PGA1_c09290 0.60 +1.4
950,812 + PGA1_c09290 0.60 +1.5
950,859 + PGA1_c09290 0.79 +0.6
950,859 + PGA1_c09290 0.79 +0.5
950,903 + -1.5
950,903 + +0.8
950,903 + -0.6
950,903 + +0.3
950,911 - +0.2
950,911 - +1.0
950,911 - +2.0
950,911 - +2.4
950,954 + -1.2
950,954 + -0.3
950,954 - +0.6
950,962 - -0.1
950,962 - -1.5
950,962 - -1.2
950,962 - +0.5
950,962 - -0.4
950,969 + +1.9
951,032 - +0.3
951,094 - -1.8
951,190 + PGA1_c09300 0.19 +0.8
951,190 + PGA1_c09300 0.19 +0.1
951,193 - PGA1_c09300 0.20 -1.4
951,195 + PGA1_c09300 0.20 -0.2
951,198 - PGA1_c09300 0.20 -1.2
951,198 - PGA1_c09300 0.20 -1.3
951,198 - PGA1_c09300 0.20 +0.0
951,203 + PGA1_c09300 0.21 +0.8
951,203 - PGA1_c09300 0.21 +0.2
951,203 - PGA1_c09300 0.21 +0.8
951,219 + PGA1_c09300 0.24 +0.5
951,230 + PGA1_c09300 0.26 -0.1
951,230 + PGA1_c09300 0.26 +1.1
951,238 - PGA1_c09300 0.28 +0.7
951,267 + PGA1_c09300 0.33 -1.1
951,275 - PGA1_c09300 0.35 +1.0
951,320 - PGA1_c09300 0.43 -1.2
951,350 - PGA1_c09300 0.49 +0.8
951,350 - PGA1_c09300 0.49 +1.8
951,350 - PGA1_c09300 0.49 -0.4
951,368 + PGA1_c09300 0.52 -1.7
951,371 - PGA1_c09300 0.53 +0.0
951,394 + PGA1_c09300 0.57 -0.6
951,402 - PGA1_c09300 0.58 -1.0
951,527 + PGA1_c09300 0.82 +2.0
951,540 - PGA1_c09300 0.84 +3.1
951,556 - PGA1_c09300 0.87 +0.3
951,589 + +0.2
951,589 + -0.2
951,589 + +1.8
951,594 + +0.2
951,597 - -0.1
951,597 - -0.8
951,628 - +0.8
951,632 + -1.0
951,679 + -0.5
951,739 - -0.2
951,742 + -0.8
951,747 - -2.2
951,783 - -0.8
951,797 + -0.4
951,797 + -0.5
951,839 - PGA1_c09310 0.15 -1.0
951,842 + PGA1_c09310 0.16 +0.1
951,882 + PGA1_c09310 0.21 +0.9
951,895 - PGA1_c09310 0.23 +1.3
951,895 - PGA1_c09310 0.23 +1.6
951,910 + PGA1_c09310 0.25 -0.2
951,918 - PGA1_c09310 0.26 +0.9
951,984 + PGA1_c09310 0.35 -0.2
951,990 + PGA1_c09310 0.36 -0.2
951,990 + PGA1_c09310 0.36 -0.0
952,018 - PGA1_c09310 0.40 +1.8
952,066 - PGA1_c09310 0.46 +1.4
952,125 - PGA1_c09310 0.55 -0.1
952,193 + PGA1_c09310 0.64 +0.8
952,214 + PGA1_c09310 0.67 +0.1
952,331 + PGA1_c09310 0.83 +0.5
952,353 + PGA1_c09310 0.86 -0.0
952,381 + PGA1_c09310 0.89 +1.5
952,389 + +0.5
952,412 + -0.0
952,412 + -0.0
952,413 + -0.5
952,413 + -0.4
952,420 - -0.8
952,420 - -0.8
952,425 + -0.2
952,425 + +0.5
952,450 + -0.4
952,452 + +0.8
952,469 + -2.7
952,523 - +1.1
952,523 - +0.8
952,561 - +1.8

Or see this region's nucleotide sequence