Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08720 and PGA1_c08730 are separated by 74 nucleotides PGA1_c08730 and PGA1_c08740 are separated by 113 nucleotides PGA1_c08740 and PGA1_c08750 are separated by 304 nucleotides
PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693
_c08720
PGA1_c08730: PGA1_c08730 - hypothetical protein, at 899,768 to 899,938
_c08730
PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482
_c08740
PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040
_c08750
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 899.067 kb on + strand, within PGA1_c08720 at 899.072 kb on + strand, within PGA1_c08720 at 899.073 kb on - strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.080 kb on - strand, within PGA1_c08720 at 899.083 kb on - strand, within PGA1_c08720 at 899.109 kb on + strand, within PGA1_c08720 at 899.158 kb on + strand, within PGA1_c08720 at 899.265 kb on - strand, within PGA1_c08720 at 899.274 kb on + strand, within PGA1_c08720 at 899.276 kb on + strand, within PGA1_c08720 at 899.277 kb on - strand, within PGA1_c08720 at 899.321 kb on + strand, within PGA1_c08720 at 899.399 kb on + strand, within PGA1_c08720 at 899.409 kb on + strand, within PGA1_c08720 at 899.417 kb on - strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.471 kb on + strand, within PGA1_c08720 at 899.480 kb on - strand, within PGA1_c08720 at 899.484 kb on - strand, within PGA1_c08720 at 899.502 kb on - strand, within PGA1_c08720 at 899.504 kb on + strand, within PGA1_c08720 at 899.514 kb on + strand, within PGA1_c08720 at 899.522 kb on - strand, within PGA1_c08720 at 899.548 kb on + strand at 899.555 kb on + strand at 899.580 kb on - strand at 899.580 kb on - strand at 899.585 kb on + strand at 899.626 kb on + strand at 899.644 kb on + strand at 899.647 kb on - strand at 899.649 kb on + strand at 899.649 kb on + strand at 899.657 kb on - strand at 899.657 kb on - strand at 899.689 kb on + strand at 899.711 kb on + strand at 899.717 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.724 kb on + strand at 899.725 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.732 kb on - strand at 899.755 kb on + strand at 899.756 kb on + strand at 899.756 kb on + strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.795 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.852 kb on + strand, within PGA1_c08730 at 899.853 kb on + strand, within PGA1_c08730 at 899.857 kb on + strand, within PGA1_c08730 at 899.860 kb on - strand, within PGA1_c08730 at 899.862 kb on - strand, within PGA1_c08730 at 899.890 kb on + strand, within PGA1_c08730 at 899.906 kb on + strand, within PGA1_c08730 at 899.923 kb on + strand at 900.003 kb on - strand at 900.012 kb on + strand at 900.049 kb on - strand at 901.476 kb on + strand at 901.484 kb on - strand at 901.484 kb on - strand at 901.487 kb on + strand at 901.571 kb on - strand at 901.594 kb on + strand at 901.665 kb on + strand at 901.665 kb on + strand at 901.670 kb on + strand at 901.689 kb on + strand at 901.699 kb on + strand at 901.720 kb on + strand at 901.728 kb on - strand at 901.811 kb on - strand at 901.828 kb on - strand at 901.860 kb on + strand at 901.891 kb on + strand at 901.907 kb on + strand at 901.916 kb on - strand, within PGA1_c08750 at 901.916 kb on - strand, within PGA1_c08750 at 901.943 kb on + strand, within PGA1_c08750 at 901.998 kb on + strand, within PGA1_c08750 at 902.011 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.056 kb on + strand, within PGA1_c08750 at 902.056 kb on + strand, within PGA1_c08750 at 902.077 kb on + strand, within PGA1_c08750 at 902.078 kb on - strand, within PGA1_c08750 at 902.085 kb on - strand, within PGA1_c08750 at 902.088 kb on + strand, within PGA1_c08750 at 902.088 kb on + strand, within PGA1_c08750 at 902.096 kb on - strand, within PGA1_c08750 at 902.096 kb on - strand, within PGA1_c08750 at 902.154 kb on + strand, within PGA1_c08750 at 902.164 kb on + strand, within PGA1_c08750 at 902.170 kb on - strand, within PGA1_c08750 at 902.172 kb on - strand, within PGA1_c08750 at 902.232 kb on + strand, within PGA1_c08750 at 902.260 kb on - strand, within PGA1_c08750 at 902.308 kb on + strand, within PGA1_c08750 at 902.308 kb on - strand, within PGA1_c08750 at 902.343 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.376 kb on + strand, within PGA1_c08750 at 902.394 kb on + strand, within PGA1_c08750 at 902.440 kb on - strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 899,067 + PGA1_c08720 0.63 -0.7 899,072 + PGA1_c08720 0.63 +1.6 899,073 - PGA1_c08720 0.63 +0.9 899,075 + PGA1_c08720 0.63 +1.5 899,075 + PGA1_c08720 0.63 +1.4 899,080 - PGA1_c08720 0.64 +1.6 899,083 - PGA1_c08720 0.64 +0.2 899,109 + PGA1_c08720 0.65 +0.2 899,158 + PGA1_c08720 0.68 +0.3 899,265 - PGA1_c08720 0.75 -0.8 899,274 + PGA1_c08720 0.75 +1.2 899,276 + PGA1_c08720 0.75 +1.8 899,277 - PGA1_c08720 0.75 -0.6 899,321 + PGA1_c08720 0.78 -1.8 899,399 + PGA1_c08720 0.82 +0.3 899,409 + PGA1_c08720 0.83 +0.3 899,417 - PGA1_c08720 0.84 -0.4 899,457 + PGA1_c08720 0.86 -0.4 899,457 + PGA1_c08720 0.86 +0.3 899,457 + PGA1_c08720 0.86 -1.5 899,465 - PGA1_c08720 0.86 +0.1 899,465 - PGA1_c08720 0.86 -0.6 899,471 + PGA1_c08720 0.87 +0.6 899,480 - PGA1_c08720 0.87 -0.8 899,484 - PGA1_c08720 0.88 -0.2 899,502 - PGA1_c08720 0.89 +0.5 899,504 + PGA1_c08720 0.89 -1.4 899,514 + PGA1_c08720 0.89 +0.0 899,522 - PGA1_c08720 0.90 +2.2 899,548 + -1.1 899,555 + +0.8 899,580 - +0.5 899,580 - -1.2 899,585 + -0.1 899,626 + +1.1 899,644 + -1.7 899,647 - -1.8 899,649 + -0.9 899,649 + -1.4 899,657 - -0.4 899,657 - -0.2 899,689 + +0.2 899,711 + -0.1 899,717 + -0.9 899,719 + -0.2 899,719 + -1.8 899,719 + +0.6 899,719 + +2.1 899,719 + -0.5 899,719 + -0.3 899,719 + -2.2 899,719 + -1.0 899,719 + -1.3 899,724 + +0.1 899,725 - +3.8 899,727 - +0.0 899,727 - +0.3 899,727 - -1.4 899,727 - +0.5 899,727 - -0.2 899,727 - -1.1 899,727 - -0.0 899,732 - +0.9 899,755 + -1.5 899,756 + +0.8 899,756 + -1.9 899,764 - -0.9 899,764 - -0.1 899,764 - +1.0 899,795 - PGA1_c08730 0.16 +1.0 899,840 - PGA1_c08730 0.42 -0.5 899,840 - PGA1_c08730 0.42 +1.7 899,852 + PGA1_c08730 0.49 -0.2 899,853 + PGA1_c08730 0.50 -1.5 899,857 + PGA1_c08730 0.52 +0.1 899,860 - PGA1_c08730 0.54 +2.0 899,862 - PGA1_c08730 0.55 -1.3 899,890 + PGA1_c08730 0.71 -1.5 899,906 + PGA1_c08730 0.81 -1.6 899,923 + -0.4 900,003 - +0.5 900,012 + +1.2 900,049 - +0.2 901,476 + -0.4 901,484 - -1.8 901,484 - -0.1 901,487 + -3.0 901,571 - +0.1 901,594 + -1.3 901,665 + +0.1 901,665 + +0.8 901,670 + +0.7 901,689 + +1.2 901,699 + -2.4 901,720 + +0.0 901,728 - -0.1 901,811 - +0.1 901,828 - +1.6 901,860 + -0.6 901,891 + -0.8 901,907 + +0.4 901,916 - PGA1_c08750 0.10 -0.5 901,916 - PGA1_c08750 0.10 -0.2 901,943 + PGA1_c08750 0.12 +0.0 901,998 + PGA1_c08750 0.17 -2.0 902,011 + PGA1_c08750 0.18 -0.3 902,049 + PGA1_c08750 0.21 +0.3 902,049 + PGA1_c08750 0.21 -0.8 902,049 + PGA1_c08750 0.21 +0.2 902,056 + PGA1_c08750 0.21 -1.5 902,056 + PGA1_c08750 0.21 +0.8 902,077 + PGA1_c08750 0.23 -1.6 902,078 - PGA1_c08750 0.23 +0.5 902,085 - PGA1_c08750 0.24 -0.8 902,088 + PGA1_c08750 0.24 +0.8 902,088 + PGA1_c08750 0.24 -1.9 902,096 - PGA1_c08750 0.25 -1.2 902,096 - PGA1_c08750 0.25 +0.2 902,154 + PGA1_c08750 0.29 -0.5 902,164 + PGA1_c08750 0.30 -0.0 902,170 - PGA1_c08750 0.31 -0.5 902,172 - PGA1_c08750 0.31 +1.2 902,232 + PGA1_c08750 0.35 +1.0 902,260 - PGA1_c08750 0.38 +0.4 902,308 + PGA1_c08750 0.42 -1.4 902,308 - PGA1_c08750 0.42 -0.3 902,343 + PGA1_c08750 0.44 -0.3 902,361 + PGA1_c08750 0.46 +0.5 902,361 + PGA1_c08750 0.46 +0.6 902,376 + PGA1_c08750 0.47 +1.0 902,394 + PGA1_c08750 0.48 +1.5 902,440 - PGA1_c08750 0.52 +1.8 902,456 + PGA1_c08750 0.53 -1.0 902,456 + PGA1_c08750 0.53 +0.7 902,464 - PGA1_c08750 0.54 -0.5 902,464 - PGA1_c08750 0.54 -1.8 902,464 - PGA1_c08750 0.54 +0.5 902,464 - PGA1_c08750 0.54 -0.2 902,464 - PGA1_c08750 0.54 -0.2 902,464 - PGA1_c08750 0.54 -2.3
Or see this region's nucleotide sequence