Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07760 and PGA1_c07770 are separated by 12 nucleotides PGA1_c07770 and PGA1_c07780 are separated by 116 nucleotides PGA1_c07780 and PGA1_c07790 are separated by 23 nucleotides PGA1_c07790 and PGA1_c07800 are separated by 128 nucleotides
PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469
_c07760
PGA1_c07770: PGA1_c07770 - TRAP transporter, subunit DctQ, at 804,482 to 804,994
_c07770
PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256
_c07780
PGA1_c07790: PGA1_c07790 - hypothetical protein, at 806,280 to 806,465
_c07790
PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619
_c07800
Position (kb) 805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 804.126 kb on + strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.173 kb on + strand, within PGA1_c07760 at 804.181 kb on - strand, within PGA1_c07760 at 804.260 kb on + strand, within PGA1_c07760 at 804.265 kb on + strand, within PGA1_c07760 at 804.267 kb on - strand, within PGA1_c07760 at 804.282 kb on - strand, within PGA1_c07760 at 804.345 kb on - strand at 804.436 kb on + strand at 804.442 kb on + strand at 804.531 kb on - strand at 804.552 kb on + strand, within PGA1_c07770 at 804.621 kb on - strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.711 kb on - strand, within PGA1_c07770 at 804.729 kb on + strand, within PGA1_c07770 at 804.737 kb on - strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.767 kb on - strand, within PGA1_c07770 at 804.824 kb on - strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.881 kb on + strand, within PGA1_c07770 at 804.918 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.950 kb on - strand at 805.007 kb on + strand at 805.031 kb on + strand at 805.039 kb on - strand at 805.070 kb on - strand at 805.108 kb on + strand at 805.137 kb on - strand at 805.137 kb on - strand at 805.145 kb on + strand at 805.196 kb on + strand at 805.196 kb on + strand at 805.204 kb on - strand at 805.237 kb on - strand, within PGA1_c07780 at 805.283 kb on + strand, within PGA1_c07780 at 805.286 kb on - strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.297 kb on - strand, within PGA1_c07780 at 805.315 kb on + strand, within PGA1_c07780 at 805.342 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.392 kb on - strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.449 kb on - strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.456 kb on + strand, within PGA1_c07780 at 805.464 kb on - strand, within PGA1_c07780 at 805.495 kb on + strand, within PGA1_c07780 at 805.495 kb on + strand, within PGA1_c07780 at 805.495 kb on + strand, within PGA1_c07780 at 805.565 kb on + strand, within PGA1_c07780 at 805.570 kb on + strand, within PGA1_c07780 at 805.577 kb on + strand, within PGA1_c07780 at 805.685 kb on + strand, within PGA1_c07780 at 805.726 kb on + strand, within PGA1_c07780 at 805.726 kb on + strand, within PGA1_c07780 at 805.734 kb on - strand, within PGA1_c07780 at 805.762 kb on - strand, within PGA1_c07780 at 805.767 kb on + strand, within PGA1_c07780 at 805.767 kb on + strand, within PGA1_c07780 at 805.812 kb on + strand, within PGA1_c07780 at 805.820 kb on - strand, within PGA1_c07780 at 805.825 kb on + strand, within PGA1_c07780 at 805.835 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.858 kb on + strand, within PGA1_c07780 at 805.903 kb on - strand, within PGA1_c07780 at 805.904 kb on - strand, within PGA1_c07780 at 805.907 kb on - strand, within PGA1_c07780 at 805.950 kb on - strand, within PGA1_c07780 at 806.047 kb on + strand, within PGA1_c07780 at 806.047 kb on + strand, within PGA1_c07780 at 806.053 kb on - strand, within PGA1_c07780 at 806.055 kb on + strand at 806.063 kb on - strand, within PGA1_c07780 at 806.070 kb on + strand, within PGA1_c07780 at 806.101 kb on - strand, within PGA1_c07780 at 806.136 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.143 kb on + strand at 806.144 kb on - strand at 806.153 kb on + strand at 806.167 kb on + strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.180 kb on - strand at 806.425 kb on - strand, within PGA1_c07790 at 806.447 kb on - strand at 806.449 kb on + strand at 806.479 kb on - strand at 806.586 kb on + strand at 806.638 kb on + strand at 806.638 kb on - strand at 806.658 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.787 kb on + strand, within PGA1_c07800 at 806.818 kb on + strand, within PGA1_c07800 at 806.841 kb on + strand, within PGA1_c07800 at 806.841 kb on + strand, within PGA1_c07800 at 806.851 kb on - strand, within PGA1_c07800 at 806.851 kb on - strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.901 kb on - strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.932 kb on + strand, within PGA1_c07800 at 806.935 kb on - strand, within PGA1_c07800 at 806.960 kb on + strand, within PGA1_c07800 at 806.982 kb on - strand, within PGA1_c07800 at 807.032 kb on - strand, within PGA1_c07800 at 807.081 kb on - strand, within PGA1_c07800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 804,126 + PGA1_c07760 0.74 +1.4 804,139 - PGA1_c07760 0.75 +0.6 804,139 - PGA1_c07760 0.75 -0.8 804,173 + PGA1_c07760 0.78 -0.8 804,181 - PGA1_c07760 0.78 -0.2 804,260 + PGA1_c07760 0.84 -1.0 804,265 + PGA1_c07760 0.85 -1.3 804,267 - PGA1_c07760 0.85 +0.8 804,282 - PGA1_c07760 0.86 -0.2 804,345 - +0.8 804,436 + -0.7 804,442 + -0.8 804,531 - +1.8 804,552 + PGA1_c07770 0.14 +1.8 804,621 - PGA1_c07770 0.27 +2.2 804,659 + PGA1_c07770 0.35 -0.4 804,659 + PGA1_c07770 0.35 +0.1 804,667 - PGA1_c07770 0.36 -0.2 804,667 - PGA1_c07770 0.36 +1.6 804,667 - PGA1_c07770 0.36 +1.1 804,667 - PGA1_c07770 0.36 +0.7 804,711 - PGA1_c07770 0.45 +0.8 804,729 + PGA1_c07770 0.48 -0.2 804,737 - PGA1_c07770 0.50 -1.8 804,754 + PGA1_c07770 0.53 +0.0 804,754 + PGA1_c07770 0.53 +0.1 804,754 + PGA1_c07770 0.53 +2.3 804,754 + PGA1_c07770 0.53 +1.7 804,754 + PGA1_c07770 0.53 +0.0 804,754 + PGA1_c07770 0.53 -0.8 804,762 - PGA1_c07770 0.55 -2.2 804,762 - PGA1_c07770 0.55 -0.5 804,762 - PGA1_c07770 0.55 -1.2 804,762 - PGA1_c07770 0.55 -0.2 804,762 - PGA1_c07770 0.55 +1.8 804,762 - PGA1_c07770 0.55 -0.2 804,762 - PGA1_c07770 0.55 +0.2 804,762 - PGA1_c07770 0.55 +0.6 804,762 - PGA1_c07770 0.55 +0.4 804,762 - PGA1_c07770 0.55 +1.7 804,762 - PGA1_c07770 0.55 -1.5 804,762 - PGA1_c07770 0.55 -1.8 804,762 - PGA1_c07770 0.55 +0.1 804,767 - PGA1_c07770 0.56 +0.5 804,824 - PGA1_c07770 0.67 +1.4 804,859 + PGA1_c07770 0.73 +0.0 804,859 + PGA1_c07770 0.73 +0.8 804,881 + PGA1_c07770 0.78 +0.6 804,918 + PGA1_c07770 0.85 +1.5 804,941 + PGA1_c07770 0.89 -2.6 804,941 + PGA1_c07770 0.89 -0.5 804,950 - +0.2 805,007 + +0.2 805,031 + -1.5 805,039 - -0.0 805,070 - -0.4 805,108 + +1.2 805,137 - +0.3 805,137 - +1.8 805,145 + +0.1 805,196 + +1.4 805,196 + +0.5 805,204 - -0.8 805,237 - PGA1_c07780 0.11 +0.8 805,283 + PGA1_c07780 0.15 -1.5 805,286 - PGA1_c07780 0.15 +1.8 805,289 + PGA1_c07780 0.16 -0.8 805,289 + PGA1_c07780 0.16 -0.8 805,297 - PGA1_c07780 0.16 +0.8 805,315 + PGA1_c07780 0.18 -1.8 805,342 + PGA1_c07780 0.20 +0.2 805,381 + PGA1_c07780 0.24 -0.2 805,381 + PGA1_c07780 0.24 +2.4 805,381 + PGA1_c07780 0.24 +1.4 805,381 + PGA1_c07780 0.24 +0.2 805,389 - PGA1_c07780 0.24 +1.6 805,389 - PGA1_c07780 0.24 +0.7 805,389 - PGA1_c07780 0.24 -1.5 805,392 - PGA1_c07780 0.25 +0.8 805,403 + PGA1_c07780 0.25 +0.5 805,403 + PGA1_c07780 0.25 +2.4 805,403 + PGA1_c07780 0.25 +0.2 805,435 - PGA1_c07780 0.28 -1.4 805,435 - PGA1_c07780 0.28 +2.2 805,449 - PGA1_c07780 0.29 +1.6 805,455 + PGA1_c07780 0.30 +0.2 805,455 + PGA1_c07780 0.30 +0.5 805,456 + PGA1_c07780 0.30 -0.4 805,464 - PGA1_c07780 0.31 +1.8 805,495 + PGA1_c07780 0.34 +0.7 805,495 + PGA1_c07780 0.34 +1.8 805,495 + PGA1_c07780 0.34 -0.2 805,565 + PGA1_c07780 0.40 +1.0 805,570 + PGA1_c07780 0.40 +1.2 805,577 + PGA1_c07780 0.41 +1.2 805,685 + PGA1_c07780 0.50 +0.8 805,726 + PGA1_c07780 0.54 -0.2 805,726 + PGA1_c07780 0.54 +0.8 805,734 - PGA1_c07780 0.54 +0.8 805,762 - PGA1_c07780 0.57 +0.8 805,767 + PGA1_c07780 0.57 -0.2 805,767 + PGA1_c07780 0.57 +0.1 805,812 + PGA1_c07780 0.61 -0.3 805,820 - PGA1_c07780 0.62 +1.8 805,825 + PGA1_c07780 0.62 +0.6 805,835 + PGA1_c07780 0.63 +0.8 805,845 + PGA1_c07780 0.64 +1.1 805,845 + PGA1_c07780 0.64 +4.2 805,845 + PGA1_c07780 0.64 +1.2 805,845 + PGA1_c07780 0.64 +0.9 805,845 + PGA1_c07780 0.64 -0.2 805,845 + PGA1_c07780 0.64 +0.8 805,845 + PGA1_c07780 0.64 +1.0 805,853 - PGA1_c07780 0.65 -1.5 805,853 - PGA1_c07780 0.65 +1.5 805,853 - PGA1_c07780 0.65 -0.2 805,853 - PGA1_c07780 0.65 +1.2 805,858 + PGA1_c07780 0.65 +0.7 805,903 - PGA1_c07780 0.69 -0.8 805,904 - PGA1_c07780 0.69 +1.7 805,907 - PGA1_c07780 0.69 +1.6 805,950 - PGA1_c07780 0.73 +2.0 806,047 + PGA1_c07780 0.82 -0.1 806,047 + PGA1_c07780 0.82 -0.4 806,053 - PGA1_c07780 0.82 +0.5 806,055 + -0.2 806,063 - PGA1_c07780 0.83 +3.2 806,070 + PGA1_c07780 0.84 +2.3 806,101 - PGA1_c07780 0.86 +1.8 806,136 + PGA1_c07780 0.89 +1.0 806,141 + PGA1_c07780 0.90 -0.6 806,141 + PGA1_c07780 0.90 -2.2 806,141 + PGA1_c07780 0.90 +0.3 806,143 + +0.5 806,144 - +0.3 806,153 + -0.2 806,167 + -0.2 806,172 + -2.5 806,172 + -0.2 806,180 - +0.1 806,425 - PGA1_c07790 0.78 +0.2 806,447 - +1.4 806,449 + +1.8 806,479 - +3.5 806,586 + -0.8 806,638 + -0.0 806,638 - +1.8 806,658 + -0.7 806,663 + +3.0 806,663 + +0.8 806,663 + -0.2 806,663 + +0.7 806,787 + PGA1_c07800 0.19 +1.2 806,818 + PGA1_c07800 0.22 +0.6 806,841 + PGA1_c07800 0.24 -0.1 806,841 + PGA1_c07800 0.24 -0.4 806,851 - PGA1_c07800 0.25 -0.9 806,851 - PGA1_c07800 0.25 +3.2 806,877 + PGA1_c07800 0.28 +0.8 806,877 + PGA1_c07800 0.28 -0.8 806,901 - PGA1_c07800 0.30 +0.2 806,910 + PGA1_c07800 0.31 +0.4 806,910 + PGA1_c07800 0.31 -0.0 806,910 + PGA1_c07800 0.31 +0.5 806,910 + PGA1_c07800 0.31 +0.8 806,910 + PGA1_c07800 0.31 -1.3 806,918 - PGA1_c07800 0.32 -2.2 806,918 - PGA1_c07800 0.32 -1.8 806,918 - PGA1_c07800 0.32 +1.2 806,927 + PGA1_c07800 0.32 -0.4 806,927 + PGA1_c07800 0.32 +1.2 806,927 + PGA1_c07800 0.32 +1.0 806,932 + PGA1_c07800 0.33 +0.8 806,935 - PGA1_c07800 0.33 +1.8 806,960 + PGA1_c07800 0.36 +0.5 806,982 - PGA1_c07800 0.38 +0.5 807,032 - PGA1_c07800 0.43 +0.0 807,081 - PGA1_c07800 0.47 +1.1
Or see this region's nucleotide sequence