Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07700 and PGA1_c07710 overlap by 4 nucleotides PGA1_c07710 and PGA1_c07720 are separated by 37 nucleotides PGA1_c07720 and PGA1_c07730 are separated by 28 nucleotides PGA1_c07730 and PGA1_c07740 overlap by 4 nucleotides PGA1_c07740 and PGA1_c07750 overlap by 8 nucleotides
PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110
_c07700
PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613
_c07710
PGA1_c07720: PGA1_c07720 - universal stress protein, at 799,651 to 800,061
_c07720
PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070
_c07730
PGA1_c07740: PGA1_c07740 - putative gluconate 5-dehydrogenase, at 801,067 to 801,828
_c07740
PGA1_c07750: PGA1_c07750 - histidinol dehydrogenase HisD, at 801,821 to 803,128
_c07750
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 799.151 kb on - strand at 799.159 kb on + strand, within PGA1_c07710 at 799.376 kb on + strand, within PGA1_c07710 at 799.455 kb on + strand, within PGA1_c07710 at 799.468 kb on + strand, within PGA1_c07710 at 799.643 kb on + strand at 799.658 kb on - strand at 799.666 kb on + strand at 799.674 kb on - strand at 799.701 kb on - strand, within PGA1_c07720 at 799.759 kb on + strand, within PGA1_c07720 at 799.765 kb on + strand, within PGA1_c07720 at 799.773 kb on - strand, within PGA1_c07720 at 799.774 kb on + strand, within PGA1_c07720 at 799.787 kb on - strand, within PGA1_c07720 at 799.787 kb on - strand, within PGA1_c07720 at 799.903 kb on + strand, within PGA1_c07720 at 799.938 kb on - strand, within PGA1_c07720 at 799.938 kb on - strand, within PGA1_c07720 at 800.009 kb on + strand, within PGA1_c07720 at 800.012 kb on - strand, within PGA1_c07720 at 800.017 kb on - strand, within PGA1_c07720 at 800.076 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.090 kb on - strand at 800.096 kb on - strand at 800.143 kb on - strand at 800.190 kb on - strand, within PGA1_c07730 at 800.193 kb on - strand, within PGA1_c07730 at 800.257 kb on + strand, within PGA1_c07730 at 800.258 kb on + strand, within PGA1_c07730 at 800.265 kb on - strand, within PGA1_c07730 at 800.313 kb on - strand, within PGA1_c07730 at 800.313 kb on - strand, within PGA1_c07730 at 800.339 kb on - strand, within PGA1_c07730 at 800.490 kb on + strand, within PGA1_c07730 at 800.667 kb on + strand, within PGA1_c07730 at 800.667 kb on + strand, within PGA1_c07730 at 800.667 kb on + strand, within PGA1_c07730 at 800.729 kb on - strand, within PGA1_c07730 at 800.731 kb on + strand, within PGA1_c07730 at 800.786 kb on - strand, within PGA1_c07730 at 800.794 kb on + strand, within PGA1_c07730 at 800.924 kb on - strand, within PGA1_c07730 at 800.924 kb on - strand, within PGA1_c07730 at 800.984 kb on + strand at 801.029 kb on + strand at 801.085 kb on - strand at 801.139 kb on - strand at 801.198 kb on - strand, within PGA1_c07740 at 801.198 kb on - strand, within PGA1_c07740 at 801.241 kb on + strand, within PGA1_c07740 at 801.246 kb on + strand, within PGA1_c07740 at 801.266 kb on + strand, within PGA1_c07740 at 801.312 kb on - strand, within PGA1_c07740 at 801.386 kb on + strand, within PGA1_c07740 at 801.394 kb on - strand, within PGA1_c07740 at 801.442 kb on + strand, within PGA1_c07740 at 801.442 kb on + strand, within PGA1_c07740 at 801.447 kb on + strand, within PGA1_c07740 at 801.502 kb on + strand, within PGA1_c07740 at 801.510 kb on - strand, within PGA1_c07740 at 801.510 kb on - strand, within PGA1_c07740 at 801.517 kb on - strand, within PGA1_c07740 at 801.517 kb on - strand, within PGA1_c07740 at 801.519 kb on + strand, within PGA1_c07740 at 801.787 kb on + strand at 801.819 kb on + strand at 801.819 kb on + strand at 801.863 kb on - strand at 801.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 799,151 - -0.6 799,159 + PGA1_c07710 0.10 +2.6 799,376 + PGA1_c07710 0.53 +0.8 799,455 + PGA1_c07710 0.69 +0.8 799,468 + PGA1_c07710 0.71 +1.4 799,643 + +0.2 799,658 - -1.2 799,666 + -0.2 799,674 - -0.4 799,701 - PGA1_c07720 0.12 -0.8 799,759 + PGA1_c07720 0.26 +0.8 799,765 + PGA1_c07720 0.28 +0.8 799,773 - PGA1_c07720 0.30 +0.5 799,774 + PGA1_c07720 0.30 +2.4 799,787 - PGA1_c07720 0.33 +1.0 799,787 - PGA1_c07720 0.33 -0.2 799,903 + PGA1_c07720 0.61 +0.8 799,938 - PGA1_c07720 0.70 +0.1 799,938 - PGA1_c07720 0.70 +0.5 800,009 + PGA1_c07720 0.87 +2.4 800,012 - PGA1_c07720 0.88 +3.2 800,017 - PGA1_c07720 0.89 -1.8 800,076 + +0.8 800,081 + +0.8 800,081 + -0.8 800,081 + +0.8 800,081 + +0.8 800,081 + +0.8 800,081 + +1.8 800,081 + +2.4 800,081 + -0.2 800,081 + +0.2 800,089 - -1.8 800,089 - -0.8 800,089 - +1.6 800,089 - -1.8 800,090 - +0.1 800,096 - +0.8 800,143 - -0.8 800,190 - PGA1_c07730 0.10 +2.3 800,193 - PGA1_c07730 0.10 +2.4 800,257 + PGA1_c07730 0.17 +0.8 800,258 + PGA1_c07730 0.17 -0.8 800,265 - PGA1_c07730 0.18 +0.8 800,313 - PGA1_c07730 0.23 +2.4 800,313 - PGA1_c07730 0.23 -2.5 800,339 - PGA1_c07730 0.25 +0.3 800,490 + PGA1_c07730 0.41 +0.8 800,667 + PGA1_c07730 0.59 +0.8 800,667 + PGA1_c07730 0.59 -0.2 800,667 + PGA1_c07730 0.59 +0.8 800,729 - PGA1_c07730 0.65 +0.8 800,731 + PGA1_c07730 0.65 -0.2 800,786 - PGA1_c07730 0.71 +0.8 800,794 + PGA1_c07730 0.72 +1.4 800,924 - PGA1_c07730 0.85 +2.8 800,924 - PGA1_c07730 0.85 -0.2 800,984 + +0.8 801,029 + +0.8 801,085 - +1.2 801,139 - +0.8 801,198 - PGA1_c07740 0.17 +0.8 801,198 - PGA1_c07740 0.17 +0.8 801,241 + PGA1_c07740 0.23 +2.4 801,246 + PGA1_c07740 0.23 +0.2 801,266 + PGA1_c07740 0.26 +0.6 801,312 - PGA1_c07740 0.32 -0.2 801,386 + PGA1_c07740 0.42 -0.2 801,394 - PGA1_c07740 0.43 +0.8 801,442 + PGA1_c07740 0.49 +0.8 801,442 + PGA1_c07740 0.49 -0.8 801,447 + PGA1_c07740 0.50 +1.8 801,502 + PGA1_c07740 0.57 -0.2 801,510 - PGA1_c07740 0.58 +0.8 801,510 - PGA1_c07740 0.58 +1.8 801,517 - PGA1_c07740 0.59 +0.8 801,517 - PGA1_c07740 0.59 +2.8 801,519 + PGA1_c07740 0.59 +0.8 801,787 + -0.2 801,819 + -0.8 801,819 + +0.1 801,863 - +1.8 801,897 + -0.3
Or see this region's nucleotide sequence