Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07465

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07450 and PGA1_c07460 are separated by 51 nucleotidesPGA1_c07460 and PGA1_c07465 are separated by 294 nucleotidesPGA1_c07465 and PGA1_c07470 are separated by 70 nucleotides PGA1_c07450: PGA1_c07450 - putative NAD dependent epimerase/dehydratase, at 768,952 to 769,548 _c07450 PGA1_c07460: PGA1_c07460 - glutathione S-transferase domain-containing protein, at 769,600 to 770,214 _c07460 PGA1_c07465: PGA1_c07465 - putative dksA/traR C4-type zinc finger protein, at 770,509 to 770,778 _c07465 PGA1_c07470: PGA1_c07470 - putative oligoendopeptidase, at 770,849 to 772,693 _c07470 Position (kb) 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 769.525 kb on + strandat 769.619 kb on + strandat 769.625 kb on + strandat 769.633 kb on - strandat 769.633 kb on - strandat 769.678 kb on - strand, within PGA1_c07460at 769.686 kb on + strand, within PGA1_c07460at 769.694 kb on - strand, within PGA1_c07460at 769.801 kb on - strand, within PGA1_c07460at 769.819 kb on + strand, within PGA1_c07460at 769.827 kb on - strand, within PGA1_c07460at 769.836 kb on - strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.870 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.886 kb on + strand, within PGA1_c07460at 769.886 kb on - strand, within PGA1_c07460at 769.947 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.992 kb on + strand, within PGA1_c07460at 770.086 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.118 kb on + strand, within PGA1_c07460at 770.125 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.260 kb on - strandat 770.328 kb on + strandat 770.396 kb on + strandat 770.410 kb on - strandat 770.481 kb on + strandat 770.482 kb on + strandat 770.482 kb on + strandat 770.489 kb on - strandat 770.490 kb on - strandat 770.519 kb on - strandat 770.550 kb on + strand, within PGA1_c07465at 770.558 kb on - strand, within PGA1_c07465at 770.588 kb on + strand, within PGA1_c07465at 770.591 kb on - strand, within PGA1_c07465at 770.615 kb on + strand, within PGA1_c07465at 770.615 kb on + strand, within PGA1_c07465at 770.693 kb on - strand, within PGA1_c07465at 770.693 kb on - strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.759 kb on + strandat 770.767 kb on - strandat 770.847 kb on + strandat 770.955 kb on + strandat 770.965 kb on + strandat 771.012 kb on + strandat 771.022 kb on + strandat 771.022 kb on + strandat 771.075 kb on - strand, within PGA1_c07470at 771.117 kb on + strand, within PGA1_c07470at 771.145 kb on + strand, within PGA1_c07470at 771.154 kb on - strand, within PGA1_c07470at 771.180 kb on + strand, within PGA1_c07470at 771.182 kb on + strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.205 kb on - strand, within PGA1_c07470at 771.301 kb on - strand, within PGA1_c07470at 771.330 kb on + strand, within PGA1_c07470at 771.330 kb on + strand, within PGA1_c07470at 771.330 kb on + strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.373 kb on - strand, within PGA1_c07470at 771.383 kb on + strand, within PGA1_c07470at 771.425 kb on + strand, within PGA1_c07470at 771.444 kb on + strand, within PGA1_c07470at 771.478 kb on + strand, within PGA1_c07470at 771.493 kb on - strand, within PGA1_c07470at 771.533 kb on - strand, within PGA1_c07470at 771.533 kb on - strand, within PGA1_c07470at 771.600 kb on + strand, within PGA1_c07470at 771.646 kb on + strand, within PGA1_c07470at 771.654 kb on - strand, within PGA1_c07470at 771.755 kb on + strand, within PGA1_c07470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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769,525 + +1.0
769,619 + +0.1
769,625 + -0.9
769,633 - -2.8
769,633 - -1.0
769,678 - PGA1_c07460 0.13 -0.4
769,686 + PGA1_c07460 0.14 +0.0
769,694 - PGA1_c07460 0.15 +0.7
769,801 - PGA1_c07460 0.33 +2.2
769,819 + PGA1_c07460 0.36 +0.2
769,827 - PGA1_c07460 0.37 -2.8
769,836 - PGA1_c07460 0.38 -0.1
769,864 + PGA1_c07460 0.43 -1.8
769,864 + PGA1_c07460 0.43 +0.0
769,864 + PGA1_c07460 0.43 -0.3
769,864 + PGA1_c07460 0.43 -0.5
769,864 + PGA1_c07460 0.43 -1.0
769,870 - PGA1_c07460 0.44 -0.2
769,872 - PGA1_c07460 0.44 -0.6
769,872 - PGA1_c07460 0.44 +0.6
769,878 + PGA1_c07460 0.45 -0.2
769,878 + PGA1_c07460 0.45 +1.8
769,886 + PGA1_c07460 0.47 +0.5
769,886 - PGA1_c07460 0.47 +1.2
769,947 - PGA1_c07460 0.56 +0.2
769,965 - PGA1_c07460 0.59 +0.1
769,965 - PGA1_c07460 0.59 -2.0
769,992 + PGA1_c07460 0.64 +0.0
770,086 - PGA1_c07460 0.79 -1.8
770,100 - PGA1_c07460 0.81 -0.3
770,100 - PGA1_c07460 0.81 -0.1
770,118 + PGA1_c07460 0.84 +1.1
770,125 + PGA1_c07460 0.85 -2.4
770,135 + PGA1_c07460 0.87 +1.0
770,135 + PGA1_c07460 0.87 +2.2
770,135 + PGA1_c07460 0.87 -0.2
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 +0.3
770,135 + PGA1_c07460 0.87 +1.0
770,135 + PGA1_c07460 0.87 +1.7
770,135 + PGA1_c07460 0.87 -0.6
770,135 + PGA1_c07460 0.87 -0.6
770,135 + PGA1_c07460 0.87 +0.1
770,135 + PGA1_c07460 0.87 +1.1
770,135 + PGA1_c07460 0.87 +1.5
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 -0.2
770,135 + PGA1_c07460 0.87 -0.1
770,135 + PGA1_c07460 0.87 +0.5
770,135 + PGA1_c07460 0.87 +0.9
770,135 + PGA1_c07460 0.87 +0.1
770,135 + PGA1_c07460 0.87 +0.8
770,135 + PGA1_c07460 0.87 +0.5
770,135 + PGA1_c07460 0.87 -0.2
770,143 - PGA1_c07460 0.88 +0.1
770,143 - PGA1_c07460 0.88 +0.0
770,143 - PGA1_c07460 0.88 -1.6
770,143 - PGA1_c07460 0.88 +0.6
770,143 - PGA1_c07460 0.88 -0.2
770,143 - PGA1_c07460 0.88 +0.7
770,143 - PGA1_c07460 0.88 -0.2
770,143 - PGA1_c07460 0.88 +0.7
770,143 - PGA1_c07460 0.88 -0.1
770,143 - PGA1_c07460 0.88 -2.3
770,143 - PGA1_c07460 0.88 -2.2
770,143 - PGA1_c07460 0.88 +1.0
770,143 - PGA1_c07460 0.88 +2.4
770,143 - PGA1_c07460 0.88 -0.8
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 -0.0
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 +1.3
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 -0.6
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 -0.3
770,143 - PGA1_c07460 0.88 +0.1
770,143 - PGA1_c07460 0.88 -2.3
770,143 - PGA1_c07460 0.88 +1.1
770,143 - PGA1_c07460 0.88 -0.4
770,143 - PGA1_c07460 0.88 -0.4
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 +0.4
770,143 - PGA1_c07460 0.88 -0.0
770,143 - PGA1_c07460 0.88 +1.4
770,143 - PGA1_c07460 0.88 +1.3
770,260 - -0.3
770,328 + -1.8
770,396 + -0.8
770,410 - +0.6
770,481 + -0.0
770,482 + -0.2
770,482 + -2.1
770,489 - -1.2
770,490 - -0.3
770,519 - -1.9
770,550 + PGA1_c07465 0.15 +1.5
770,558 - PGA1_c07465 0.18 +1.4
770,588 + PGA1_c07465 0.29 -1.2
770,591 - PGA1_c07465 0.30 +0.1
770,615 + PGA1_c07465 0.39 -2.0
770,615 + PGA1_c07465 0.39 -0.2
770,693 - PGA1_c07465 0.68 -0.2
770,693 - PGA1_c07465 0.68 -0.3
770,738 + PGA1_c07465 0.85 -0.6
770,738 + PGA1_c07465 0.85 -2.5
770,738 + PGA1_c07465 0.85 -0.5
770,738 + PGA1_c07465 0.85 +1.1
770,746 - PGA1_c07465 0.88 -0.8
770,746 - PGA1_c07465 0.88 -0.2
770,746 - PGA1_c07465 0.88 -1.0
770,759 + -1.0
770,767 - -0.1
770,847 + +0.8
770,955 + -3.0
770,965 + -0.8
771,012 + +0.2
771,022 + -2.3
771,022 + +1.0
771,075 - PGA1_c07470 0.12 -1.3
771,117 + PGA1_c07470 0.15 +0.1
771,145 + PGA1_c07470 0.16 +0.8
771,154 - PGA1_c07470 0.17 +1.2
771,180 + PGA1_c07470 0.18 -0.2
771,182 + PGA1_c07470 0.18 -2.8
771,188 - PGA1_c07470 0.18 -2.0
771,188 - PGA1_c07470 0.18 -0.3
771,188 - PGA1_c07470 0.18 -0.5
771,205 - PGA1_c07470 0.19 +1.7
771,301 - PGA1_c07470 0.24 -1.0
771,330 + PGA1_c07470 0.26 +1.4
771,330 + PGA1_c07470 0.26 -1.0
771,330 + PGA1_c07470 0.26 -2.1
771,338 - PGA1_c07470 0.27 -0.0
771,338 - PGA1_c07470 0.27 -0.8
771,338 - PGA1_c07470 0.27 -1.2
771,338 - PGA1_c07470 0.27 +0.2
771,373 - PGA1_c07470 0.28 -2.3
771,383 + PGA1_c07470 0.29 +1.6
771,425 + PGA1_c07470 0.31 +0.2
771,444 + PGA1_c07470 0.32 +0.2
771,478 + PGA1_c07470 0.34 +0.6
771,493 - PGA1_c07470 0.35 -0.4
771,533 - PGA1_c07470 0.37 -2.0
771,533 - PGA1_c07470 0.37 -1.1
771,600 + PGA1_c07470 0.41 -2.2
771,646 + PGA1_c07470 0.43 -0.2
771,654 - PGA1_c07470 0.44 +0.2
771,755 + PGA1_c07470 0.49 +1.8

Or see this region's nucleotide sequence