Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07380

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07360 and PGA1_c07370 overlap by 4 nucleotidesPGA1_c07370 and PGA1_c07380 overlap by 1 nucleotidesPGA1_c07380 and PGA1_c07390 overlap by 4 nucleotides PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108 _c07360 PGA1_c07370: PGA1_c07370 - putative short chain dehydrogenase, at 759,105 to 759,875 _c07370 PGA1_c07380: PGA1_c07380 - dihydroxy-acid dehydratase IlvD, at 759,875 to 761,590 _c07380 PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686 _c07390 Position (kb) 759 760 761 762Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 758.892 kb on - strand, within PGA1_c07360at 758.938 kb on - strand, within PGA1_c07360at 758.964 kb on + strand, within PGA1_c07360at 758.969 kb on + strand, within PGA1_c07360at 759.011 kb on - strandat 759.057 kb on + strandat 759.057 kb on + strandat 759.064 kb on - strandat 759.116 kb on + strandat 759.122 kb on - strandat 759.148 kb on - strandat 759.175 kb on + strandat 759.180 kb on + strandat 759.265 kb on - strand, within PGA1_c07370at 759.284 kb on + strand, within PGA1_c07370at 759.292 kb on - strand, within PGA1_c07370at 759.316 kb on + strand, within PGA1_c07370at 759.316 kb on + strand, within PGA1_c07370at 759.323 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.337 kb on + strand, within PGA1_c07370at 759.357 kb on + strand, within PGA1_c07370at 759.365 kb on - strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.403 kb on + strand, within PGA1_c07370at 759.411 kb on + strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.430 kb on - strand, within PGA1_c07370at 759.467 kb on - strand, within PGA1_c07370at 759.504 kb on + strand, within PGA1_c07370at 759.527 kb on - strand, within PGA1_c07370at 759.530 kb on + strand, within PGA1_c07370at 759.565 kb on - strand, within PGA1_c07370at 759.565 kb on - strand, within PGA1_c07370at 759.575 kb on - strand, within PGA1_c07370at 759.602 kb on - strand, within PGA1_c07370at 759.729 kb on + strand, within PGA1_c07370at 759.744 kb on - strand, within PGA1_c07370at 759.873 kb on + strandat 759.881 kb on + strandat 759.905 kb on - strandat 760.069 kb on + strand, within PGA1_c07380at 760.080 kb on + strand, within PGA1_c07380at 760.102 kb on + strand, within PGA1_c07380at 760.106 kb on - strand, within PGA1_c07380at 760.108 kb on + strand, within PGA1_c07380at 760.108 kb on + strand, within PGA1_c07380at 760.111 kb on - strand, within PGA1_c07380at 760.168 kb on - strand, within PGA1_c07380at 760.168 kb on - strand, within PGA1_c07380at 760.178 kb on + strand, within PGA1_c07380at 760.208 kb on + strand, within PGA1_c07380at 760.346 kb on + strand, within PGA1_c07380at 760.357 kb on + strand, within PGA1_c07380at 760.379 kb on + strand, within PGA1_c07380at 760.452 kb on - strand, within PGA1_c07380at 760.490 kb on - strand, within PGA1_c07380at 760.495 kb on + strand, within PGA1_c07380at 760.547 kb on + strand, within PGA1_c07380at 760.589 kb on - strand, within PGA1_c07380at 760.648 kb on - strand, within PGA1_c07380at 760.716 kb on - strand, within PGA1_c07380at 760.716 kb on - strand, within PGA1_c07380at 760.737 kb on - strand, within PGA1_c07380at 760.792 kb on + strand, within PGA1_c07380at 760.832 kb on + strand, within PGA1_c07380at 760.848 kb on - strand, within PGA1_c07380at 760.916 kb on + strand, within PGA1_c07380at 760.916 kb on + strand, within PGA1_c07380at 761.027 kb on + strand, within PGA1_c07380at 761.027 kb on + strand, within PGA1_c07380at 761.027 kb on + strand, within PGA1_c07380at 761.123 kb on + strand, within PGA1_c07380at 761.123 kb on - strand, within PGA1_c07380at 761.142 kb on - strand, within PGA1_c07380at 761.155 kb on + strand, within PGA1_c07380at 761.155 kb on + strand, within PGA1_c07380at 761.155 kb on + strand, within PGA1_c07380at 761.157 kb on - strand, within PGA1_c07380at 761.163 kb on - strand, within PGA1_c07380at 761.199 kb on + strand, within PGA1_c07380at 761.199 kb on + strand, within PGA1_c07380at 761.204 kb on - strand, within PGA1_c07380at 761.207 kb on - strand, within PGA1_c07380at 761.212 kb on - strand, within PGA1_c07380at 761.245 kb on - strand, within PGA1_c07380at 761.250 kb on - strand, within PGA1_c07380at 761.429 kb on + strandat 761.443 kb on + strandat 761.456 kb on - strandat 761.530 kb on + strandat 761.593 kb on - strandat 761.593 kb on - strandat 761.629 kb on + strandat 761.630 kb on + strandat 761.635 kb on + strandat 761.637 kb on - strandat 761.638 kb on - strandat 761.638 kb on - strandat 761.638 kb on - strandat 761.638 kb on - strandat 761.718 kb on + strandat 761.760 kb on + strandat 761.800 kb on - strand, within PGA1_c07390at 761.834 kb on - strand, within PGA1_c07390at 761.849 kb on + strand, within PGA1_c07390at 761.857 kb on - strand, within PGA1_c07390at 761.905 kb on - strand, within PGA1_c07390at 761.953 kb on - strand, within PGA1_c07390at 761.955 kb on + strand, within PGA1_c07390at 762.033 kb on - strand, within PGA1_c07390at 762.046 kb on - strand, within PGA1_c07390at 762.069 kb on + strand, within PGA1_c07390at 762.077 kb on - strand, within PGA1_c07390at 762.168 kb on + strand, within PGA1_c07390at 762.271 kb on - strand, within PGA1_c07390at 762.292 kb on - strand, within PGA1_c07390at 762.313 kb on - strand, within PGA1_c07390at 762.322 kb on + strand, within PGA1_c07390at 762.322 kb on + strand, within PGA1_c07390at 762.322 kb on + strand, within PGA1_c07390at 762.330 kb on - strand, within PGA1_c07390at 762.364 kb on + strand, within PGA1_c07390at 762.372 kb on - strand, within PGA1_c07390at 762.389 kb on + strand, within PGA1_c07390at 762.397 kb on - strand, within PGA1_c07390at 762.407 kb on + strand, within PGA1_c07390at 762.412 kb on + strand, within PGA1_c07390at 762.420 kb on - strand, within PGA1_c07390at 762.457 kb on + strand, within PGA1_c07390at 762.457 kb on + strand, within PGA1_c07390at 762.458 kb on + strand, within PGA1_c07390at 762.463 kb on + strand, within PGA1_c07390at 762.466 kb on - strand, within PGA1_c07390at 762.471 kb on - strand, within PGA1_c07390at 762.486 kb on - strand, within PGA1_c07390at 762.494 kb on + strand, within PGA1_c07390at 762.526 kb on + strand, within PGA1_c07390at 762.537 kb on + strand, within PGA1_c07390at 762.545 kb on - strand, within PGA1_c07390at 762.545 kb on - strand, within PGA1_c07390at 762.577 kb on - strand, within PGA1_c07390at 762.586 kb on - strand, within PGA1_c07390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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758,892 - PGA1_c07360 0.78 -4.3
758,938 - PGA1_c07360 0.83 +2.1
758,964 + PGA1_c07360 0.85 -0.3
758,969 + PGA1_c07360 0.86 -0.2
759,011 - -0.5
759,057 + +0.4
759,057 + -0.2
759,064 - +0.8
759,116 + -0.0
759,122 - -0.8
759,148 - +0.2
759,175 + -0.6
759,180 + +1.0
759,265 - PGA1_c07370 0.21 +0.3
759,284 + PGA1_c07370 0.23 -3.1
759,292 - PGA1_c07370 0.24 +0.3
759,316 + PGA1_c07370 0.27 -1.0
759,316 + PGA1_c07370 0.27 +0.4
759,323 - PGA1_c07370 0.28 -0.4
759,324 - PGA1_c07370 0.28 -0.2
759,324 - PGA1_c07370 0.28 -0.4
759,324 - PGA1_c07370 0.28 +0.1
759,337 + PGA1_c07370 0.30 -1.8
759,357 + PGA1_c07370 0.33 -3.4
759,365 - PGA1_c07370 0.34 -2.6
759,393 + PGA1_c07370 0.37 -1.2
759,393 + PGA1_c07370 0.37 +0.1
759,393 + PGA1_c07370 0.37 -2.5
759,401 - PGA1_c07370 0.38 -1.7
759,401 - PGA1_c07370 0.38 -1.8
759,401 - PGA1_c07370 0.38 -1.7
759,401 - PGA1_c07370 0.38 -0.0
759,401 - PGA1_c07370 0.38 +1.8
759,401 - PGA1_c07370 0.38 -0.0
759,403 + PGA1_c07370 0.39 -0.2
759,411 + PGA1_c07370 0.40 +0.0
759,411 - PGA1_c07370 0.40 +0.6
759,411 - PGA1_c07370 0.40 +0.7
759,411 - PGA1_c07370 0.40 +0.1
759,430 - PGA1_c07370 0.42 +1.8
759,467 - PGA1_c07370 0.47 -0.0
759,504 + PGA1_c07370 0.52 -0.8
759,527 - PGA1_c07370 0.55 -0.8
759,530 + PGA1_c07370 0.55 -1.4
759,565 - PGA1_c07370 0.60 +0.1
759,565 - PGA1_c07370 0.60 +1.6
759,575 - PGA1_c07370 0.61 +0.8
759,602 - PGA1_c07370 0.64 -1.9
759,729 + PGA1_c07370 0.81 -0.1
759,744 - PGA1_c07370 0.83 +0.3
759,873 + -0.2
759,881 + -0.5
759,905 - -0.1
760,069 + PGA1_c07380 0.11 -0.6
760,080 + PGA1_c07380 0.12 -0.2
760,102 + PGA1_c07380 0.13 -0.7
760,106 - PGA1_c07380 0.13 +0.2
760,108 + PGA1_c07380 0.14 +2.8
760,108 + PGA1_c07380 0.14 -0.5
760,111 - PGA1_c07380 0.14 -0.2
760,168 - PGA1_c07380 0.17 -0.4
760,168 - PGA1_c07380 0.17 +0.3
760,178 + PGA1_c07380 0.18 +1.4
760,208 + PGA1_c07380 0.19 -2.5
760,346 + PGA1_c07380 0.27 -2.5
760,357 + PGA1_c07380 0.28 -1.1
760,379 + PGA1_c07380 0.29 -0.2
760,452 - PGA1_c07380 0.34 +0.2
760,490 - PGA1_c07380 0.36 +0.1
760,495 + PGA1_c07380 0.36 +0.1
760,547 + PGA1_c07380 0.39 +0.0
760,589 - PGA1_c07380 0.42 +0.8
760,648 - PGA1_c07380 0.45 +1.8
760,716 - PGA1_c07380 0.49 -1.2
760,716 - PGA1_c07380 0.49 +0.1
760,737 - PGA1_c07380 0.50 -0.9
760,792 + PGA1_c07380 0.53 +0.7
760,832 + PGA1_c07380 0.56 +1.1
760,848 - PGA1_c07380 0.57 -0.3
760,916 + PGA1_c07380 0.61 -2.3
760,916 + PGA1_c07380 0.61 -2.8
761,027 + PGA1_c07380 0.67 +0.7
761,027 + PGA1_c07380 0.67 +1.6
761,027 + PGA1_c07380 0.67 +1.2
761,123 + PGA1_c07380 0.73 -1.7
761,123 - PGA1_c07380 0.73 -0.8
761,142 - PGA1_c07380 0.74 -0.3
761,155 + PGA1_c07380 0.75 -1.2
761,155 + PGA1_c07380 0.75 +0.3
761,155 + PGA1_c07380 0.75 +0.3
761,157 - PGA1_c07380 0.75 -0.7
761,163 - PGA1_c07380 0.75 +1.3
761,199 + PGA1_c07380 0.77 -0.5
761,199 + PGA1_c07380 0.77 +0.5
761,204 - PGA1_c07380 0.77 -2.2
761,207 - PGA1_c07380 0.78 -0.2
761,212 - PGA1_c07380 0.78 -0.3
761,245 - PGA1_c07380 0.80 -0.8
761,250 - PGA1_c07380 0.80 -1.0
761,429 + -2.5
761,443 + +0.4
761,456 - +0.4
761,530 + -0.3
761,593 - -0.4
761,593 - +0.3
761,629 + +0.6
761,630 + -0.9
761,635 + -0.2
761,637 - +0.8
761,638 - +0.3
761,638 - -1.2
761,638 - +0.5
761,638 - +0.7
761,718 + +0.0
761,760 + +0.5
761,800 - PGA1_c07390 0.10 -1.2
761,834 - PGA1_c07390 0.12 -1.8
761,849 + PGA1_c07390 0.12 +0.1
761,857 - PGA1_c07390 0.13 -0.8
761,905 - PGA1_c07390 0.15 -0.3
761,953 - PGA1_c07390 0.17 -0.1
761,955 + PGA1_c07390 0.18 +0.4
762,033 - PGA1_c07390 0.21 -2.0
762,046 - PGA1_c07390 0.22 -0.6
762,069 + PGA1_c07390 0.23 +0.1
762,077 - PGA1_c07390 0.23 -3.3
762,168 + PGA1_c07390 0.28 +0.1
762,271 - PGA1_c07390 0.33 -0.5
762,292 - PGA1_c07390 0.34 +1.6
762,313 - PGA1_c07390 0.35 -1.5
762,322 + PGA1_c07390 0.35 +0.2
762,322 + PGA1_c07390 0.35 -1.6
762,322 + PGA1_c07390 0.35 -1.5
762,330 - PGA1_c07390 0.35 +0.1
762,364 + PGA1_c07390 0.37 -0.2
762,372 - PGA1_c07390 0.37 -0.2
762,389 + PGA1_c07390 0.38 +0.2
762,397 - PGA1_c07390 0.39 -0.2
762,407 + PGA1_c07390 0.39 +0.9
762,412 + PGA1_c07390 0.39 -1.3
762,420 - PGA1_c07390 0.40 -1.4
762,457 + PGA1_c07390 0.41 +0.8
762,457 + PGA1_c07390 0.41 +1.1
762,458 + PGA1_c07390 0.41 -1.8
762,463 + PGA1_c07390 0.42 -0.4
762,466 - PGA1_c07390 0.42 +0.1
762,471 - PGA1_c07390 0.42 +0.5
762,486 - PGA1_c07390 0.43 +0.4
762,494 + PGA1_c07390 0.43 +0.4
762,526 + PGA1_c07390 0.45 -1.0
762,537 + PGA1_c07390 0.45 -1.8
762,545 - PGA1_c07390 0.46 -0.4
762,545 - PGA1_c07390 0.46 -0.3
762,577 - PGA1_c07390 0.47 -3.0
762,586 - PGA1_c07390 0.48 +0.1

Or see this region's nucleotide sequence