Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07360

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07340 and PGA1_c07350 overlap by 11 nucleotidesPGA1_c07350 and PGA1_c07360 overlap by 4 nucleotidesPGA1_c07360 and PGA1_c07370 overlap by 4 nucleotidesPGA1_c07370 and PGA1_c07380 overlap by 1 nucleotides PGA1_c07340: PGA1_c07340 - Gluconolactonase, at 756,661 to 757,533 _c07340 PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134 _c07350 PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108 _c07360 PGA1_c07370: PGA1_c07370 - putative short chain dehydrogenase, at 759,105 to 759,875 _c07370 PGA1_c07380: PGA1_c07380 - dihydroxy-acid dehydratase IlvD, at 759,875 to 761,590 _c07380 Position (kb) 758 759 760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 757.222 kb on + strand, within PGA1_c07340at 757.230 kb on - strand, within PGA1_c07340at 757.230 kb on - strand, within PGA1_c07340at 757.231 kb on - strand, within PGA1_c07340at 757.258 kb on + strand, within PGA1_c07340at 757.307 kb on + strand, within PGA1_c07340at 757.315 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.346 kb on + strand, within PGA1_c07340at 757.381 kb on + strand, within PGA1_c07340at 757.424 kb on - strand, within PGA1_c07340at 757.495 kb on - strandat 757.591 kb on - strand, within PGA1_c07350at 757.610 kb on - strand, within PGA1_c07350at 757.610 kb on - strand, within PGA1_c07350at 757.689 kb on + strand, within PGA1_c07350at 757.798 kb on + strand, within PGA1_c07350at 757.868 kb on - strand, within PGA1_c07350at 757.940 kb on + strand, within PGA1_c07350at 757.946 kb on - strand, within PGA1_c07350at 757.946 kb on - strand, within PGA1_c07350at 757.959 kb on - strand, within PGA1_c07350at 758.044 kb on + strand, within PGA1_c07350at 758.110 kb on + strandat 758.110 kb on + strandat 758.176 kb on - strandat 758.192 kb on - strandat 758.206 kb on + strandat 758.211 kb on + strandat 758.259 kb on + strand, within PGA1_c07360at 758.259 kb on + strand, within PGA1_c07360at 758.263 kb on + strand, within PGA1_c07360at 758.354 kb on + strand, within PGA1_c07360at 758.354 kb on + strand, within PGA1_c07360at 758.360 kb on - strand, within PGA1_c07360at 758.409 kb on + strand, within PGA1_c07360at 758.427 kb on - strand, within PGA1_c07360at 758.591 kb on + strand, within PGA1_c07360at 758.635 kb on - strand, within PGA1_c07360at 758.649 kb on + strand, within PGA1_c07360at 758.735 kb on - strand, within PGA1_c07360at 758.814 kb on + strand, within PGA1_c07360at 758.819 kb on + strand, within PGA1_c07360at 758.822 kb on - strand, within PGA1_c07360at 758.827 kb on - strand, within PGA1_c07360at 758.892 kb on - strand, within PGA1_c07360at 758.938 kb on - strand, within PGA1_c07360at 758.964 kb on + strand, within PGA1_c07360at 758.969 kb on + strand, within PGA1_c07360at 759.011 kb on - strandat 759.057 kb on + strandat 759.057 kb on + strandat 759.064 kb on - strandat 759.116 kb on + strandat 759.122 kb on - strandat 759.148 kb on - strandat 759.175 kb on + strandat 759.180 kb on + strandat 759.265 kb on - strand, within PGA1_c07370at 759.284 kb on + strand, within PGA1_c07370at 759.292 kb on - strand, within PGA1_c07370at 759.316 kb on + strand, within PGA1_c07370at 759.316 kb on + strand, within PGA1_c07370at 759.323 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.324 kb on - strand, within PGA1_c07370at 759.337 kb on + strand, within PGA1_c07370at 759.357 kb on + strand, within PGA1_c07370at 759.365 kb on - strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.393 kb on + strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.401 kb on - strand, within PGA1_c07370at 759.403 kb on + strand, within PGA1_c07370at 759.411 kb on + strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.411 kb on - strand, within PGA1_c07370at 759.430 kb on - strand, within PGA1_c07370at 759.467 kb on - strand, within PGA1_c07370at 759.504 kb on + strand, within PGA1_c07370at 759.527 kb on - strand, within PGA1_c07370at 759.530 kb on + strand, within PGA1_c07370at 759.565 kb on - strand, within PGA1_c07370at 759.565 kb on - strand, within PGA1_c07370at 759.575 kb on - strand, within PGA1_c07370at 759.602 kb on - strand, within PGA1_c07370at 759.729 kb on + strand, within PGA1_c07370at 759.744 kb on - strand, within PGA1_c07370at 759.873 kb on + strandat 759.881 kb on + strandat 759.905 kb on - strandat 760.069 kb on + strand, within PGA1_c07380at 760.080 kb on + strand, within PGA1_c07380at 760.102 kb on + strand, within PGA1_c07380at 760.106 kb on - strand, within PGA1_c07380at 760.108 kb on + strand, within PGA1_c07380at 760.108 kb on + strand, within PGA1_c07380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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757,222 + PGA1_c07340 0.64 -0.4
757,230 - PGA1_c07340 0.65 -1.0
757,230 - PGA1_c07340 0.65 -2.3
757,231 - PGA1_c07340 0.65 -0.5
757,258 + PGA1_c07340 0.68 -3.0
757,307 + PGA1_c07340 0.74 -0.8
757,315 - PGA1_c07340 0.75 +0.7
757,320 - PGA1_c07340 0.75 -1.7
757,320 - PGA1_c07340 0.75 +0.1
757,320 - PGA1_c07340 0.75 +1.0
757,346 + PGA1_c07340 0.78 -1.6
757,381 + PGA1_c07340 0.82 +0.2
757,424 - PGA1_c07340 0.87 +0.5
757,495 - +0.3
757,591 - PGA1_c07350 0.11 -0.1
757,610 - PGA1_c07350 0.14 -1.3
757,610 - PGA1_c07350 0.14 -2.0
757,689 + PGA1_c07350 0.27 -0.4
757,798 + PGA1_c07350 0.45 -0.2
757,868 - PGA1_c07350 0.56 -0.5
757,940 + PGA1_c07350 0.68 +0.1
757,946 - PGA1_c07350 0.69 -0.2
757,946 - PGA1_c07350 0.69 +1.8
757,959 - PGA1_c07350 0.71 -1.5
758,044 + PGA1_c07350 0.85 -0.6
758,110 + +0.4
758,110 + +0.4
758,176 - -0.5
758,192 - -1.0
758,206 + +0.1
758,211 + +0.6
758,259 + PGA1_c07360 0.13 -2.0
758,259 + PGA1_c07360 0.13 +0.7
758,263 + PGA1_c07360 0.13 +0.5
758,354 + PGA1_c07360 0.23 +0.4
758,354 + PGA1_c07360 0.23 -0.2
758,360 - PGA1_c07360 0.23 -1.4
758,409 + PGA1_c07360 0.28 -0.9
758,427 - PGA1_c07360 0.30 -2.0
758,591 + PGA1_c07360 0.47 -0.8
758,635 - PGA1_c07360 0.52 +0.8
758,649 + PGA1_c07360 0.53 -0.7
758,735 - PGA1_c07360 0.62 +0.5
758,814 + PGA1_c07360 0.70 -0.9
758,819 + PGA1_c07360 0.70 +0.2
758,822 - PGA1_c07360 0.71 +2.4
758,827 - PGA1_c07360 0.71 -1.5
758,892 - PGA1_c07360 0.78 -4.3
758,938 - PGA1_c07360 0.83 +2.1
758,964 + PGA1_c07360 0.85 -0.3
758,969 + PGA1_c07360 0.86 -0.2
759,011 - -0.5
759,057 + +0.4
759,057 + -0.2
759,064 - +0.8
759,116 + -0.0
759,122 - -0.8
759,148 - +0.2
759,175 + -0.6
759,180 + +1.0
759,265 - PGA1_c07370 0.21 +0.3
759,284 + PGA1_c07370 0.23 -3.1
759,292 - PGA1_c07370 0.24 +0.3
759,316 + PGA1_c07370 0.27 -1.0
759,316 + PGA1_c07370 0.27 +0.4
759,323 - PGA1_c07370 0.28 -0.4
759,324 - PGA1_c07370 0.28 -0.2
759,324 - PGA1_c07370 0.28 -0.4
759,324 - PGA1_c07370 0.28 +0.1
759,337 + PGA1_c07370 0.30 -1.8
759,357 + PGA1_c07370 0.33 -3.4
759,365 - PGA1_c07370 0.34 -2.6
759,393 + PGA1_c07370 0.37 -1.2
759,393 + PGA1_c07370 0.37 +0.1
759,393 + PGA1_c07370 0.37 -2.5
759,401 - PGA1_c07370 0.38 -1.7
759,401 - PGA1_c07370 0.38 -1.8
759,401 - PGA1_c07370 0.38 -1.7
759,401 - PGA1_c07370 0.38 -0.0
759,401 - PGA1_c07370 0.38 +1.8
759,401 - PGA1_c07370 0.38 -0.0
759,403 + PGA1_c07370 0.39 -0.2
759,411 + PGA1_c07370 0.40 +0.0
759,411 - PGA1_c07370 0.40 +0.6
759,411 - PGA1_c07370 0.40 +0.7
759,411 - PGA1_c07370 0.40 +0.1
759,430 - PGA1_c07370 0.42 +1.8
759,467 - PGA1_c07370 0.47 -0.0
759,504 + PGA1_c07370 0.52 -0.8
759,527 - PGA1_c07370 0.55 -0.8
759,530 + PGA1_c07370 0.55 -1.4
759,565 - PGA1_c07370 0.60 +0.1
759,565 - PGA1_c07370 0.60 +1.6
759,575 - PGA1_c07370 0.61 +0.8
759,602 - PGA1_c07370 0.64 -1.9
759,729 + PGA1_c07370 0.81 -0.1
759,744 - PGA1_c07370 0.83 +0.3
759,873 + -0.2
759,881 + -0.5
759,905 - -0.1
760,069 + PGA1_c07380 0.11 -0.6
760,080 + PGA1_c07380 0.12 -0.2
760,102 + PGA1_c07380 0.13 -0.7
760,106 - PGA1_c07380 0.13 +0.2
760,108 + PGA1_c07380 0.14 +2.8
760,108 + PGA1_c07380 0.14 -0.5

Or see this region's nucleotide sequence