Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07330 and PGA1_c07340 are separated by 8 nucleotides PGA1_c07340 and PGA1_c07350 overlap by 11 nucleotides PGA1_c07350 and PGA1_c07360 overlap by 4 nucleotides PGA1_c07360 and PGA1_c07370 overlap by 4 nucleotides
PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652
_c07330
PGA1_c07340: PGA1_c07340 - Gluconolactonase, at 756,661 to 757,533
_c07340
PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134
_c07350
PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108
_c07360
PGA1_c07370: PGA1_c07370 - putative short chain dehydrogenase, at 759,105 to 759,875
_c07370
Position (kb) 757
758
759 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.599 kb on + strand at 756.624 kb on - strand at 756.640 kb on - strand at 756.640 kb on - strand at 756.640 kb on - strand at 756.647 kb on - strand at 756.657 kb on - strand at 756.715 kb on + strand at 756.715 kb on + strand at 756.715 kb on + strand at 756.735 kb on + strand at 756.823 kb on - strand, within PGA1_c07340 at 756.861 kb on - strand, within PGA1_c07340 at 756.888 kb on - strand, within PGA1_c07340 at 757.033 kb on - strand, within PGA1_c07340 at 757.222 kb on + strand, within PGA1_c07340 at 757.230 kb on - strand, within PGA1_c07340 at 757.230 kb on - strand, within PGA1_c07340 at 757.231 kb on - strand, within PGA1_c07340 at 757.258 kb on + strand, within PGA1_c07340 at 757.307 kb on + strand, within PGA1_c07340 at 757.315 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.346 kb on + strand, within PGA1_c07340 at 757.381 kb on + strand, within PGA1_c07340 at 757.424 kb on - strand, within PGA1_c07340 at 757.495 kb on - strand at 757.591 kb on - strand, within PGA1_c07350 at 757.610 kb on - strand, within PGA1_c07350 at 757.610 kb on - strand, within PGA1_c07350 at 757.689 kb on + strand, within PGA1_c07350 at 757.798 kb on + strand, within PGA1_c07350 at 757.868 kb on - strand, within PGA1_c07350 at 757.940 kb on + strand, within PGA1_c07350 at 757.946 kb on - strand, within PGA1_c07350 at 757.946 kb on - strand, within PGA1_c07350 at 757.959 kb on - strand, within PGA1_c07350 at 758.044 kb on + strand, within PGA1_c07350 at 758.110 kb on + strand at 758.110 kb on + strand at 758.176 kb on - strand at 758.192 kb on - strand at 758.206 kb on + strand at 758.211 kb on + strand at 758.259 kb on + strand, within PGA1_c07360 at 758.259 kb on + strand, within PGA1_c07360 at 758.263 kb on + strand, within PGA1_c07360 at 758.354 kb on + strand, within PGA1_c07360 at 758.354 kb on + strand, within PGA1_c07360 at 758.360 kb on - strand, within PGA1_c07360 at 758.409 kb on + strand, within PGA1_c07360 at 758.427 kb on - strand, within PGA1_c07360 at 758.591 kb on + strand, within PGA1_c07360 at 758.635 kb on - strand, within PGA1_c07360 at 758.649 kb on + strand, within PGA1_c07360 at 758.735 kb on - strand, within PGA1_c07360 at 758.814 kb on + strand, within PGA1_c07360 at 758.819 kb on + strand, within PGA1_c07360 at 758.822 kb on - strand, within PGA1_c07360 at 758.827 kb on - strand, within PGA1_c07360 at 758.892 kb on - strand, within PGA1_c07360 at 758.938 kb on - strand, within PGA1_c07360 at 758.964 kb on + strand, within PGA1_c07360 at 758.969 kb on + strand, within PGA1_c07360 at 759.011 kb on - strand at 759.057 kb on + strand at 759.057 kb on + strand at 759.064 kb on - strand at 759.116 kb on + strand at 759.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 756,557 + +0.1 756,557 + +0.7 756,557 + -1.9 756,599 + -2.2 756,624 - +1.6 756,640 - -0.1 756,640 - -1.2 756,640 - -0.7 756,647 - -1.2 756,657 - -0.2 756,715 + -0.5 756,715 + -0.7 756,715 + +0.8 756,735 + -0.6 756,823 - PGA1_c07340 0.19 -0.2 756,861 - PGA1_c07340 0.23 +0.1 756,888 - PGA1_c07340 0.26 +0.5 757,033 - PGA1_c07340 0.43 +0.2 757,222 + PGA1_c07340 0.64 -0.4 757,230 - PGA1_c07340 0.65 -1.0 757,230 - PGA1_c07340 0.65 -2.3 757,231 - PGA1_c07340 0.65 -0.5 757,258 + PGA1_c07340 0.68 -3.0 757,307 + PGA1_c07340 0.74 -0.8 757,315 - PGA1_c07340 0.75 +0.7 757,320 - PGA1_c07340 0.75 -1.7 757,320 - PGA1_c07340 0.75 +0.1 757,320 - PGA1_c07340 0.75 +1.0 757,346 + PGA1_c07340 0.78 -1.6 757,381 + PGA1_c07340 0.82 +0.2 757,424 - PGA1_c07340 0.87 +0.5 757,495 - +0.3 757,591 - PGA1_c07350 0.11 -0.1 757,610 - PGA1_c07350 0.14 -1.3 757,610 - PGA1_c07350 0.14 -2.0 757,689 + PGA1_c07350 0.27 -0.4 757,798 + PGA1_c07350 0.45 -0.2 757,868 - PGA1_c07350 0.56 -0.5 757,940 + PGA1_c07350 0.68 +0.1 757,946 - PGA1_c07350 0.69 -0.2 757,946 - PGA1_c07350 0.69 +1.8 757,959 - PGA1_c07350 0.71 -1.5 758,044 + PGA1_c07350 0.85 -0.6 758,110 + +0.4 758,110 + +0.4 758,176 - -0.5 758,192 - -1.0 758,206 + +0.1 758,211 + +0.6 758,259 + PGA1_c07360 0.13 -2.0 758,259 + PGA1_c07360 0.13 +0.7 758,263 + PGA1_c07360 0.13 +0.5 758,354 + PGA1_c07360 0.23 +0.4 758,354 + PGA1_c07360 0.23 -0.2 758,360 - PGA1_c07360 0.23 -1.4 758,409 + PGA1_c07360 0.28 -0.9 758,427 - PGA1_c07360 0.30 -2.0 758,591 + PGA1_c07360 0.47 -0.8 758,635 - PGA1_c07360 0.52 +0.8 758,649 + PGA1_c07360 0.53 -0.7 758,735 - PGA1_c07360 0.62 +0.5 758,814 + PGA1_c07360 0.70 -0.9 758,819 + PGA1_c07360 0.70 +0.2 758,822 - PGA1_c07360 0.71 +2.4 758,827 - PGA1_c07360 0.71 -1.5 758,892 - PGA1_c07360 0.78 -4.3 758,938 - PGA1_c07360 0.83 +2.1 758,964 + PGA1_c07360 0.85 -0.3 758,969 + PGA1_c07360 0.86 -0.2 759,011 - -0.5 759,057 + +0.4 759,057 + -0.2 759,064 - +0.8 759,116 + -0.0 759,122 - -0.8
Or see this region's nucleotide sequence