Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07320

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07310 and PGA1_c07320 are separated by 1 nucleotidesPGA1_c07320 and PGA1_c07330 are separated by 58 nucleotides PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data), at 752,766 to 753,887 _c07310 PGA1_c07320: PGA1_c07320 - Inositol transport system ATP-binding protein (from data), at 753,889 to 754,674 _c07320 PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652 _c07330 Position (kb) 753 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 752.916 kb on + strand, within PGA1_c07310at 752.916 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.924 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.979 kb on + strand, within PGA1_c07310at 753.004 kb on - strand, within PGA1_c07310at 753.070 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.080 kb on + strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.122 kb on + strand, within PGA1_c07310at 753.137 kb on - strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.189 kb on + strand, within PGA1_c07310at 753.192 kb on - strand, within PGA1_c07310at 753.210 kb on - strand, within PGA1_c07310at 753.280 kb on - strand, within PGA1_c07310at 753.288 kb on + strand, within PGA1_c07310at 753.316 kb on - strand, within PGA1_c07310at 753.331 kb on + strand, within PGA1_c07310at 753.364 kb on - strand, within PGA1_c07310at 753.404 kb on + strand, within PGA1_c07310at 753.412 kb on - strand, within PGA1_c07310at 753.433 kb on + strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.532 kb on + strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.543 kb on + strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.592 kb on - strand, within PGA1_c07310at 753.596 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.723 kb on + strand, within PGA1_c07310at 753.723 kb on + strand, within PGA1_c07310at 753.833 kb on - strandat 753.866 kb on + strandat 753.891 kb on + strandat 753.899 kb on - strandat 753.904 kb on + strandat 753.912 kb on - strandat 753.976 kb on - strand, within PGA1_c07320at 754.026 kb on + strand, within PGA1_c07320at 754.043 kb on - strand, within PGA1_c07320at 754.231 kb on - strand, within PGA1_c07320at 754.281 kb on - strand, within PGA1_c07320at 754.284 kb on - strand, within PGA1_c07320at 754.295 kb on + strand, within PGA1_c07320at 754.313 kb on - strand, within PGA1_c07320at 754.318 kb on - strand, within PGA1_c07320at 754.355 kb on - strand, within PGA1_c07320at 754.393 kb on - strand, within PGA1_c07320at 754.425 kb on + strand, within PGA1_c07320at 754.447 kb on - strand, within PGA1_c07320at 754.479 kb on + strand, within PGA1_c07320at 754.502 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.565 kb on - strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.571 kb on + strand, within PGA1_c07320at 754.574 kb on - strand, within PGA1_c07320at 754.598 kb on - strandat 754.664 kb on - strandat 754.716 kb on - strandat 754.754 kb on + strandat 754.857 kb on + strandat 755.008 kb on - strand, within PGA1_c07330at 755.112 kb on + strand, within PGA1_c07330at 755.181 kb on + strand, within PGA1_c07330at 755.193 kb on + strand, within PGA1_c07330at 755.201 kb on - strand, within PGA1_c07330at 755.201 kb on - strand, within PGA1_c07330at 755.226 kb on + strand, within PGA1_c07330at 755.226 kb on + strand, within PGA1_c07330at 755.236 kb on + strand, within PGA1_c07330at 755.247 kb on + strand, within PGA1_c07330at 755.252 kb on + strand, within PGA1_c07330at 755.260 kb on - strand, within PGA1_c07330at 755.275 kb on + strand, within PGA1_c07330at 755.283 kb on - strand, within PGA1_c07330at 755.308 kb on - strand, within PGA1_c07330at 755.321 kb on + strand, within PGA1_c07330at 755.329 kb on - strand, within PGA1_c07330at 755.336 kb on + strand, within PGA1_c07330at 755.344 kb on - strand, within PGA1_c07330at 755.349 kb on - strand, within PGA1_c07330at 755.349 kb on - strand, within PGA1_c07330at 755.362 kb on - strand, within PGA1_c07330at 755.398 kb on + strand, within PGA1_c07330at 755.408 kb on + strand, within PGA1_c07330at 755.480 kb on - strand, within PGA1_c07330at 755.613 kb on - strand, within PGA1_c07330at 755.634 kb on + strand, within PGA1_c07330at 755.642 kb on - strand, within PGA1_c07330at 755.642 kb on - strand, within PGA1_c07330at 755.654 kb on + strand, within PGA1_c07330at 755.667 kb on + strand, within PGA1_c07330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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752,916 + PGA1_c07310 0.13 +0.5
752,916 + PGA1_c07310 0.13 -0.2
752,918 + PGA1_c07310 0.14 +0.5
752,918 + PGA1_c07310 0.14 +0.8
752,924 - PGA1_c07310 0.14 +0.5
752,926 - PGA1_c07310 0.14 +0.0
752,926 - PGA1_c07310 0.14 -0.4
752,926 - PGA1_c07310 0.14 +0.2
752,926 - PGA1_c07310 0.14 -0.3
752,979 + PGA1_c07310 0.19 -0.4
753,004 - PGA1_c07310 0.21 +0.2
753,070 + PGA1_c07310 0.27 -1.2
753,075 + PGA1_c07310 0.28 +0.0
753,075 + PGA1_c07310 0.28 +0.3
753,075 + PGA1_c07310 0.28 +0.6
753,075 + PGA1_c07310 0.28 +0.6
753,075 + PGA1_c07310 0.28 +0.1
753,075 + PGA1_c07310 0.28 -0.6
753,080 + PGA1_c07310 0.28 +0.3
753,083 - PGA1_c07310 0.28 +0.1
753,083 - PGA1_c07310 0.28 +1.4
753,083 - PGA1_c07310 0.28 +0.7
753,083 - PGA1_c07310 0.28 +0.5
753,083 - PGA1_c07310 0.28 -1.5
753,083 - PGA1_c07310 0.28 -0.9
753,083 - PGA1_c07310 0.28 -1.5
753,083 - PGA1_c07310 0.28 +0.1
753,122 + PGA1_c07310 0.32 -0.1
753,137 - PGA1_c07310 0.33 +0.1
753,168 + PGA1_c07310 0.36 +1.8
753,168 + PGA1_c07310 0.36 +1.5
753,168 + PGA1_c07310 0.36 -0.5
753,176 - PGA1_c07310 0.37 -0.3
753,176 - PGA1_c07310 0.37 +0.2
753,189 + PGA1_c07310 0.38 -2.3
753,192 - PGA1_c07310 0.38 +1.1
753,210 - PGA1_c07310 0.40 -0.6
753,280 - PGA1_c07310 0.46 -1.5
753,288 + PGA1_c07310 0.47 +0.8
753,316 - PGA1_c07310 0.49 +0.1
753,331 + PGA1_c07310 0.50 +1.3
753,364 - PGA1_c07310 0.53 +0.1
753,404 + PGA1_c07310 0.57 -2.5
753,412 - PGA1_c07310 0.58 +0.2
753,433 + PGA1_c07310 0.59 -3.0
753,441 - PGA1_c07310 0.60 -0.2
753,441 - PGA1_c07310 0.60 -0.3
753,515 + PGA1_c07310 0.67 +0.7
753,515 + PGA1_c07310 0.67 -0.3
753,515 + PGA1_c07310 0.67 +1.2
753,532 + PGA1_c07310 0.68 -1.2
753,540 - PGA1_c07310 0.69 -0.2
753,540 - PGA1_c07310 0.69 +0.5
753,543 + PGA1_c07310 0.69 -2.5
753,551 - PGA1_c07310 0.70 +1.5
753,551 - PGA1_c07310 0.70 +0.8
753,551 - PGA1_c07310 0.70 +0.9
753,592 - PGA1_c07310 0.74 -0.2
753,596 + PGA1_c07310 0.74 +0.1
753,699 + PGA1_c07310 0.83 +0.5
753,699 + PGA1_c07310 0.83 -0.8
753,723 + PGA1_c07310 0.85 +0.8
753,723 + PGA1_c07310 0.85 +0.4
753,833 - +2.4
753,866 + +0.5
753,891 + +0.9
753,899 - -1.3
753,904 + -0.9
753,912 - +0.7
753,976 - PGA1_c07320 0.11 -0.3
754,026 + PGA1_c07320 0.17 -0.9
754,043 - PGA1_c07320 0.20 -1.2
754,231 - PGA1_c07320 0.44 +0.1
754,281 - PGA1_c07320 0.50 -0.6
754,284 - PGA1_c07320 0.50 +0.2
754,295 + PGA1_c07320 0.52 -0.1
754,313 - PGA1_c07320 0.54 -2.0
754,318 - PGA1_c07320 0.55 +0.0
754,355 - PGA1_c07320 0.59 +1.3
754,393 - PGA1_c07320 0.64 -0.8
754,425 + PGA1_c07320 0.68 +1.7
754,447 - PGA1_c07320 0.71 +0.3
754,479 + PGA1_c07320 0.75 +1.2
754,502 + PGA1_c07320 0.78 -0.3
754,546 + PGA1_c07320 0.84 -0.2
754,546 + PGA1_c07320 0.84 +0.5
754,565 - PGA1_c07320 0.86 -1.8
754,566 + PGA1_c07320 0.86 +0.2
754,566 + PGA1_c07320 0.86 -0.3
754,566 + PGA1_c07320 0.86 -0.5
754,566 + PGA1_c07320 0.86 -1.2
754,571 + PGA1_c07320 0.87 -0.9
754,574 - PGA1_c07320 0.87 +0.3
754,598 - +0.1
754,664 - -1.3
754,716 - -3.7
754,754 + -0.5
754,857 + -0.9
755,008 - PGA1_c07330 0.14 +0.4
755,112 + PGA1_c07330 0.20 -1.2
755,181 + PGA1_c07330 0.23 +1.1
755,193 + PGA1_c07330 0.24 -1.6
755,201 - PGA1_c07330 0.24 -0.4
755,201 - PGA1_c07330 0.24 -0.1
755,226 + PGA1_c07330 0.26 -0.9
755,226 + PGA1_c07330 0.26 +0.2
755,236 + PGA1_c07330 0.26 -1.3
755,247 + PGA1_c07330 0.27 +1.0
755,252 + PGA1_c07330 0.27 -1.2
755,260 - PGA1_c07330 0.27 +1.4
755,275 + PGA1_c07330 0.28 -0.4
755,283 - PGA1_c07330 0.29 +0.2
755,308 - PGA1_c07330 0.30 +0.5
755,321 + PGA1_c07330 0.31 -0.2
755,329 - PGA1_c07330 0.31 -0.2
755,336 + PGA1_c07330 0.31 -0.0
755,344 - PGA1_c07330 0.32 -1.3
755,349 - PGA1_c07330 0.32 -0.0
755,349 - PGA1_c07330 0.32 -0.0
755,362 - PGA1_c07330 0.33 +0.0
755,398 + PGA1_c07330 0.35 -0.9
755,408 + PGA1_c07330 0.35 -0.2
755,480 - PGA1_c07330 0.39 +0.5
755,613 - PGA1_c07330 0.46 -0.8
755,634 + PGA1_c07330 0.47 +1.0
755,642 - PGA1_c07330 0.47 +0.7
755,642 - PGA1_c07330 0.47 +0.6
755,654 + PGA1_c07330 0.48 -0.2
755,667 + PGA1_c07330 0.49 -0.8

Or see this region's nucleotide sequence