Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07260

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07250 and PGA1_c07260 are separated by 17 nucleotidesPGA1_c07260 and PGA1_c07270 are separated by 22 nucleotidesPGA1_c07270 and PGA1_c07280 are separated by 11 nucleotides PGA1_c07250: PGA1_c07250 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data), at 745,281 to 747,155 _c07250 PGA1_c07260: PGA1_c07260 - putative inositol 2-dehydrogenase, at 747,173 to 748,378 _c07260 PGA1_c07270: PGA1_c07270 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 748,401 to 749,294 _c07270 PGA1_c07280: PGA1_c07280 - putative oxidoreduktase, at 749,306 to 750,463 _c07280 Position (kb) 747 748 749Strain fitness (log2 ratio) -2 -1 0 1 2at 746.189 kb on + strand, within PGA1_c07250at 746.306 kb on + strand, within PGA1_c07250at 746.306 kb on + strand, within PGA1_c07250at 746.334 kb on - strand, within PGA1_c07250at 746.355 kb on + strand, within PGA1_c07250at 746.370 kb on + strand, within PGA1_c07250at 746.400 kb on + strand, within PGA1_c07250at 746.402 kb on + strand, within PGA1_c07250at 746.410 kb on + strand, within PGA1_c07250at 746.426 kb on - strand, within PGA1_c07250at 746.468 kb on + strand, within PGA1_c07250at 746.487 kb on - strand, within PGA1_c07250at 746.489 kb on + strand, within PGA1_c07250at 746.504 kb on + strand, within PGA1_c07250at 746.506 kb on - strand, within PGA1_c07250at 746.512 kb on - strand, within PGA1_c07250at 746.512 kb on - strand, within PGA1_c07250at 746.555 kb on + strand, within PGA1_c07250at 746.563 kb on + strand, within PGA1_c07250at 746.571 kb on - strand, within PGA1_c07250at 746.576 kb on - strand, within PGA1_c07250at 746.709 kb on - strand, within PGA1_c07250at 746.709 kb on - strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.837 kb on - strand, within PGA1_c07250at 746.837 kb on - strand, within PGA1_c07250at 746.844 kb on + strand, within PGA1_c07250at 746.852 kb on + strand, within PGA1_c07250at 746.875 kb on - strand, within PGA1_c07250at 746.937 kb on + strand, within PGA1_c07250at 746.937 kb on - strand, within PGA1_c07250at 747.035 kb on + strandat 747.078 kb on - strandat 747.079 kb on + strandat 747.087 kb on - strandat 747.167 kb on + strandat 747.169 kb on - strandat 747.276 kb on - strandat 747.356 kb on + strand, within PGA1_c07260at 747.363 kb on + strand, within PGA1_c07260at 747.461 kb on - strand, within PGA1_c07260at 747.492 kb on - strand, within PGA1_c07260at 747.554 kb on + strand, within PGA1_c07260at 747.557 kb on - strand, within PGA1_c07260at 747.642 kb on - strand, within PGA1_c07260at 747.670 kb on + strand, within PGA1_c07260at 747.679 kb on - strand, within PGA1_c07260at 747.706 kb on + strand, within PGA1_c07260at 747.724 kb on - strand, within PGA1_c07260at 747.803 kb on - strand, within PGA1_c07260at 747.804 kb on - strand, within PGA1_c07260at 747.804 kb on - strand, within PGA1_c07260at 747.806 kb on + strand, within PGA1_c07260at 747.812 kb on + strand, within PGA1_c07260at 747.898 kb on + strand, within PGA1_c07260at 747.898 kb on + strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.945 kb on - strand, within PGA1_c07260at 747.947 kb on + strand, within PGA1_c07260at 748.052 kb on + strand, within PGA1_c07260at 748.090 kb on - strand, within PGA1_c07260at 748.101 kb on + strand, within PGA1_c07260at 748.109 kb on - strand, within PGA1_c07260at 748.139 kb on - strand, within PGA1_c07260at 748.147 kb on + strand, within PGA1_c07260at 748.158 kb on + strand, within PGA1_c07260at 748.158 kb on + strand, within PGA1_c07260at 748.166 kb on - strand, within PGA1_c07260at 748.193 kb on + strand, within PGA1_c07260at 748.202 kb on - strand, within PGA1_c07260at 748.276 kb on + strandat 748.287 kb on + strandat 748.287 kb on + strandat 748.295 kb on - strandat 748.297 kb on + strandat 748.304 kb on + strandat 748.346 kb on - strandat 748.437 kb on - strandat 748.485 kb on + strandat 748.485 kb on + strandat 748.490 kb on + strandat 748.516 kb on + strand, within PGA1_c07270at 748.521 kb on + strand, within PGA1_c07270at 748.524 kb on - strand, within PGA1_c07270at 748.530 kb on + strand, within PGA1_c07270at 748.570 kb on - strand, within PGA1_c07270at 748.658 kb on - strand, within PGA1_c07270at 748.663 kb on - strand, within PGA1_c07270at 748.837 kb on - strand, within PGA1_c07270at 748.850 kb on - strand, within PGA1_c07270at 749.026 kb on + strand, within PGA1_c07270at 749.034 kb on - strand, within PGA1_c07270at 749.044 kb on - strand, within PGA1_c07270at 749.057 kb on + strand, within PGA1_c07270at 749.065 kb on - strand, within PGA1_c07270at 749.210 kb on - strandat 749.234 kb on - strandat 749.240 kb on + strandat 749.254 kb on - strandat 749.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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746,189 + PGA1_c07250 0.48 -0.2
746,306 + PGA1_c07250 0.55 +0.2
746,306 + PGA1_c07250 0.55 -0.8
746,334 - PGA1_c07250 0.56 -0.8
746,355 + PGA1_c07250 0.57 +1.1
746,370 + PGA1_c07250 0.58 -2.5
746,400 + PGA1_c07250 0.60 +0.1
746,402 + PGA1_c07250 0.60 +0.6
746,410 + PGA1_c07250 0.60 +0.3
746,426 - PGA1_c07250 0.61 +0.4
746,468 + PGA1_c07250 0.63 +0.5
746,487 - PGA1_c07250 0.64 +0.4
746,489 + PGA1_c07250 0.64 +0.6
746,504 + PGA1_c07250 0.65 +0.8
746,506 - PGA1_c07250 0.65 -0.2
746,512 - PGA1_c07250 0.66 +0.0
746,512 - PGA1_c07250 0.66 +1.2
746,555 + PGA1_c07250 0.68 -1.2
746,563 + PGA1_c07250 0.68 -1.3
746,571 - PGA1_c07250 0.69 +1.1
746,576 - PGA1_c07250 0.69 +0.5
746,709 - PGA1_c07250 0.76 -0.0
746,709 - PGA1_c07250 0.76 +0.8
746,829 + PGA1_c07250 0.83 +0.4
746,829 + PGA1_c07250 0.83 -0.5
746,829 + PGA1_c07250 0.83 -0.4
746,829 + PGA1_c07250 0.83 +0.5
746,837 - PGA1_c07250 0.83 +0.5
746,837 - PGA1_c07250 0.83 -2.4
746,844 + PGA1_c07250 0.83 -1.3
746,852 + PGA1_c07250 0.84 -0.5
746,875 - PGA1_c07250 0.85 -0.9
746,937 + PGA1_c07250 0.88 -0.6
746,937 - PGA1_c07250 0.88 -1.1
747,035 + +0.4
747,078 - +0.6
747,079 + -0.1
747,087 - -1.2
747,167 + +0.1
747,169 - -0.8
747,276 - +0.8
747,356 + PGA1_c07260 0.15 +0.4
747,363 + PGA1_c07260 0.16 -0.9
747,461 - PGA1_c07260 0.24 -1.8
747,492 - PGA1_c07260 0.26 +0.2
747,554 + PGA1_c07260 0.32 -0.7
747,557 - PGA1_c07260 0.32 -1.3
747,642 - PGA1_c07260 0.39 -0.1
747,670 + PGA1_c07260 0.41 -0.8
747,679 - PGA1_c07260 0.42 +0.1
747,706 + PGA1_c07260 0.44 -0.3
747,724 - PGA1_c07260 0.46 -0.2
747,803 - PGA1_c07260 0.52 -0.2
747,804 - PGA1_c07260 0.52 -0.3
747,804 - PGA1_c07260 0.52 +0.3
747,806 + PGA1_c07260 0.52 +0.0
747,812 + PGA1_c07260 0.53 -0.8
747,898 + PGA1_c07260 0.60 +0.6
747,898 + PGA1_c07260 0.60 -0.9
747,906 - PGA1_c07260 0.61 -2.6
747,906 - PGA1_c07260 0.61 -1.0
747,906 - PGA1_c07260 0.61 +1.1
747,945 - PGA1_c07260 0.64 -1.6
747,947 + PGA1_c07260 0.64 -1.8
748,052 + PGA1_c07260 0.73 +0.1
748,090 - PGA1_c07260 0.76 -1.2
748,101 + PGA1_c07260 0.77 +1.0
748,109 - PGA1_c07260 0.78 -0.0
748,139 - PGA1_c07260 0.80 -0.4
748,147 + PGA1_c07260 0.81 +1.8
748,158 + PGA1_c07260 0.82 -0.1
748,158 + PGA1_c07260 0.82 -0.8
748,166 - PGA1_c07260 0.82 +0.5
748,193 + PGA1_c07260 0.85 +0.2
748,202 - PGA1_c07260 0.85 -1.1
748,276 + +0.4
748,287 + +0.8
748,287 + -2.6
748,295 - -0.1
748,297 + +0.6
748,304 + +1.1
748,346 - -2.0
748,437 - +0.2
748,485 + -0.4
748,485 + -0.2
748,490 + +0.6
748,516 + PGA1_c07270 0.13 -0.6
748,521 + PGA1_c07270 0.13 -2.3
748,524 - PGA1_c07270 0.14 -0.8
748,530 + PGA1_c07270 0.14 +0.8
748,570 - PGA1_c07270 0.19 +0.1
748,658 - PGA1_c07270 0.29 -0.6
748,663 - PGA1_c07270 0.29 -2.3
748,837 - PGA1_c07270 0.49 +0.3
748,850 - PGA1_c07270 0.50 +1.3
749,026 + PGA1_c07270 0.70 +0.1
749,034 - PGA1_c07270 0.71 -1.5
749,044 - PGA1_c07270 0.72 +1.2
749,057 + PGA1_c07270 0.73 +0.3
749,065 - PGA1_c07270 0.74 -1.3
749,210 - -0.5
749,234 - -1.8
749,240 + -0.0
749,254 - -0.8
749,361 - -2.6

Or see this region's nucleotide sequence