Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06960

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06940 and PGA1_c06950 are separated by 186 nucleotidesPGA1_c06950 and PGA1_c06960 are separated by 99 nucleotidesPGA1_c06960 and PGA1_c06970 are separated by 256 nucleotides PGA1_c06940: PGA1_c06940 - putative adenosylcobalamin(B12)-dependent ribonucleotide reductases, at 713,256 to 715,553 _c06940 PGA1_c06950: PGA1_c06950 - Uncharacterized conserved protein, at 715,740 to 716,171 _c06950 PGA1_c06960: PGA1_c06960 - Uncharacterized protein conserved in bacteria, at 716,271 to 716,588 _c06960 PGA1_c06970: PGA1_c06970 - pyruvate kinase PykA, at 716,845 to 718,290 _c06970 Position (kb) 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 715.272 kb on + strand, within PGA1_c06940at 715.280 kb on - strand, within PGA1_c06940at 715.289 kb on + strand, within PGA1_c06940at 715.292 kb on - strand, within PGA1_c06940at 715.292 kb on - strand, within PGA1_c06940at 715.292 kb on - strand, within PGA1_c06940at 715.297 kb on - strand, within PGA1_c06940at 715.307 kb on + strand, within PGA1_c06940at 715.314 kb on - strand, within PGA1_c06940at 715.315 kb on - strand, within PGA1_c06940at 715.324 kb on + strandat 715.422 kb on - strandat 715.445 kb on + strandat 715.514 kb on + strandat 715.596 kb on + strandat 715.596 kb on + strandat 715.596 kb on + strandat 715.596 kb on + strandat 715.604 kb on - strandat 715.604 kb on - strandat 715.673 kb on - strandat 715.696 kb on - strandat 715.778 kb on + strandat 715.840 kb on - strand, within PGA1_c06950at 715.840 kb on - strand, within PGA1_c06950at 715.862 kb on + strand, within PGA1_c06950at 715.862 kb on + strand, within PGA1_c06950at 715.862 kb on + strand, within PGA1_c06950at 715.870 kb on - strand, within PGA1_c06950at 715.870 kb on - strand, within PGA1_c06950at 715.870 kb on - strand, within PGA1_c06950at 715.870 kb on - strand, within PGA1_c06950at 715.888 kb on - strand, within PGA1_c06950at 715.889 kb on + strand, within PGA1_c06950at 716.001 kb on + strand, within PGA1_c06950at 716.039 kb on + strand, within PGA1_c06950at 716.048 kb on + strand, within PGA1_c06950at 716.056 kb on - strand, within PGA1_c06950at 716.071 kb on + strand, within PGA1_c06950at 716.086 kb on - strand, within PGA1_c06950at 716.093 kb on - strand, within PGA1_c06950at 716.104 kb on - strand, within PGA1_c06950at 716.168 kb on - strandat 716.173 kb on - strandat 716.178 kb on - strandat 716.185 kb on + strandat 716.187 kb on + strandat 716.193 kb on - strandat 716.205 kb on + strandat 716.205 kb on + strandat 716.213 kb on - strandat 716.242 kb on + strandat 716.366 kb on + strand, within PGA1_c06960at 716.388 kb on - strand, within PGA1_c06960at 716.390 kb on + strand, within PGA1_c06960at 716.441 kb on + strand, within PGA1_c06960at 716.449 kb on - strand, within PGA1_c06960at 716.449 kb on - strand, within PGA1_c06960at 716.449 kb on - strand, within PGA1_c06960at 716.631 kb on + strandat 716.631 kb on + strandat 716.631 kb on + strandat 716.631 kb on + strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.641 kb on + strandat 716.644 kb on - strandat 716.661 kb on + strandat 716.695 kb on - strandat 716.717 kb on + strandat 716.750 kb on + strandat 716.752 kb on - strandat 716.835 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
remove
715,272 + PGA1_c06940 0.88 +0.8
715,280 - PGA1_c06940 0.88 +0.6
715,289 + PGA1_c06940 0.88 +0.1
715,292 - PGA1_c06940 0.89 -0.8
715,292 - PGA1_c06940 0.89 +1.1
715,292 - PGA1_c06940 0.89 +0.8
715,297 - PGA1_c06940 0.89 -1.2
715,307 + PGA1_c06940 0.89 +0.2
715,314 - PGA1_c06940 0.90 -1.1
715,315 - PGA1_c06940 0.90 +0.4
715,324 + +0.0
715,422 - -0.3
715,445 + -1.8
715,514 + +1.5
715,596 + +0.5
715,596 + +1.6
715,596 + -0.9
715,596 + +0.4
715,604 - +1.2
715,604 - -0.2
715,673 - +0.0
715,696 - +0.3
715,778 + -2.0
715,840 - PGA1_c06950 0.23 +0.4
715,840 - PGA1_c06950 0.23 +0.6
715,862 + PGA1_c06950 0.28 -0.4
715,862 + PGA1_c06950 0.28 +0.8
715,862 + PGA1_c06950 0.28 +0.1
715,870 - PGA1_c06950 0.30 -0.4
715,870 - PGA1_c06950 0.30 -0.0
715,870 - PGA1_c06950 0.30 -0.4
715,870 - PGA1_c06950 0.30 +0.2
715,888 - PGA1_c06950 0.34 +0.1
715,889 + PGA1_c06950 0.34 +2.2
716,001 + PGA1_c06950 0.60 -0.2
716,039 + PGA1_c06950 0.69 -1.4
716,048 + PGA1_c06950 0.71 -1.3
716,056 - PGA1_c06950 0.73 -0.7
716,071 + PGA1_c06950 0.77 -1.8
716,086 - PGA1_c06950 0.80 +0.3
716,093 - PGA1_c06950 0.82 +0.3
716,104 - PGA1_c06950 0.84 +0.6
716,168 - -3.2
716,173 - +0.7
716,178 - +0.1
716,185 + +2.4
716,187 + -0.3
716,193 - -0.8
716,205 + -0.3
716,205 + -0.9
716,213 - -0.2
716,242 + +2.3
716,366 + PGA1_c06960 0.30 +0.0
716,388 - PGA1_c06960 0.37 -0.0
716,390 + PGA1_c06960 0.37 +0.1
716,441 + PGA1_c06960 0.53 -0.4
716,449 - PGA1_c06960 0.56 -1.7
716,449 - PGA1_c06960 0.56 -2.0
716,449 - PGA1_c06960 0.56 -0.2
716,631 + +0.7
716,631 + +0.8
716,631 + -2.4
716,631 + -1.5
716,639 - -0.9
716,639 - -1.0
716,639 - +1.1
716,639 - -1.3
716,639 - +0.6
716,639 - +0.8
716,639 - -0.9
716,639 - -0.8
716,641 + +0.9
716,644 - -1.0
716,661 + -0.1
716,695 - +2.0
716,717 + +0.1
716,750 + -0.0
716,752 - -0.1
716,835 + +0.9

Or see this region's nucleotide sequence