Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06640 and PGA1_c06650 are separated by 178 nucleotides PGA1_c06650 and PGA1_c06660 are separated by 19 nucleotides PGA1_c06660 and PGA1_c06670 are separated by 136 nucleotides
PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588
_c06640
PGA1_c06650: PGA1_c06650 - transcriptional regulator, GntR family, at 681,767 to 682,420
_c06650
PGA1_c06660: PGA1_c06660 - glycosyl transferase-like protein, at 682,440 to 684,380
_c06660
PGA1_c06670: PGA1_c06670 - carbamoyl-phosphate synthase small chain, at 684,517 to 685,680
_c06670
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 681.445 kb on + strand, within PGA1_c06640 at 681.453 kb on - strand, within PGA1_c06640 at 681.522 kb on + strand, within PGA1_c06640 at 681.584 kb on + strand at 681.598 kb on - strand at 681.611 kb on - strand at 681.611 kb on - strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.669 kb on + strand at 681.691 kb on - strand at 681.691 kb on - strand at 681.699 kb on - strand at 681.710 kb on - strand at 681.730 kb on + strand at 681.736 kb on - strand at 681.760 kb on - strand at 681.813 kb on + strand at 681.922 kb on - strand, within PGA1_c06650 at 682.032 kb on + strand, within PGA1_c06650 at 682.138 kb on + strand, within PGA1_c06650 at 682.138 kb on + strand, within PGA1_c06650 at 682.146 kb on - strand, within PGA1_c06650 at 682.220 kb on - strand, within PGA1_c06650 at 682.292 kb on + strand, within PGA1_c06650 at 682.415 kb on + strand at 682.415 kb on + strand at 682.423 kb on - strand at 682.423 kb on - strand at 682.440 kb on - strand at 682.481 kb on + strand at 682.844 kb on + strand, within PGA1_c06660 at 682.844 kb on + strand, within PGA1_c06660 at 682.847 kb on + strand, within PGA1_c06660 at 682.899 kb on + strand, within PGA1_c06660 at 682.987 kb on - strand, within PGA1_c06660 at 683.024 kb on + strand, within PGA1_c06660 at 683.032 kb on - strand, within PGA1_c06660 at 683.086 kb on - strand, within PGA1_c06660 at 683.086 kb on - strand, within PGA1_c06660 at 683.197 kb on + strand, within PGA1_c06660 at 683.199 kb on - strand, within PGA1_c06660 at 683.199 kb on - strand, within PGA1_c06660 at 683.260 kb on + strand, within PGA1_c06660 at 683.410 kb on + strand, within PGA1_c06660 at 683.422 kb on - strand, within PGA1_c06660 at 683.473 kb on + strand, within PGA1_c06660 at 683.602 kb on + strand, within PGA1_c06660 at 683.610 kb on - strand, within PGA1_c06660 at 683.629 kb on + strand, within PGA1_c06660 at 683.631 kb on + strand, within PGA1_c06660 at 683.631 kb on + strand, within PGA1_c06660 at 683.639 kb on - strand, within PGA1_c06660 at 683.650 kb on + strand, within PGA1_c06660 at 683.668 kb on - strand, within PGA1_c06660 at 683.727 kb on - strand, within PGA1_c06660 at 683.729 kb on - strand, within PGA1_c06660 at 683.729 kb on - strand, within PGA1_c06660 at 683.738 kb on + strand, within PGA1_c06660 at 683.757 kb on + strand, within PGA1_c06660 at 683.797 kb on - strand, within PGA1_c06660 at 683.797 kb on - strand, within PGA1_c06660 at 683.797 kb on - strand, within PGA1_c06660 at 683.822 kb on + strand, within PGA1_c06660 at 683.846 kb on + strand, within PGA1_c06660 at 683.848 kb on - strand, within PGA1_c06660 at 683.849 kb on - strand, within PGA1_c06660 at 683.849 kb on - strand, within PGA1_c06660 at 683.939 kb on - strand, within PGA1_c06660 at 683.999 kb on + strand, within PGA1_c06660 at 684.007 kb on - strand, within PGA1_c06660 at 684.085 kb on - strand, within PGA1_c06660 at 684.232 kb on + strand at 684.328 kb on + strand at 684.328 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.369 kb on + strand at 684.371 kb on + strand at 684.377 kb on - strand at 684.388 kb on - strand at 684.399 kb on + strand at 684.399 kb on + strand at 684.407 kb on - strand at 684.445 kb on - strand at 684.455 kb on - strand at 684.494 kb on + strand at 684.499 kb on + strand at 684.507 kb on - strand at 684.507 kb on - strand at 684.523 kb on - strand at 684.572 kb on - strand at 684.590 kb on - strand at 684.681 kb on + strand, within PGA1_c06670 at 684.699 kb on + strand, within PGA1_c06670 at 684.700 kb on + strand, within PGA1_c06670 at 684.707 kb on - strand, within PGA1_c06670 at 684.739 kb on + strand, within PGA1_c06670 at 684.739 kb on + strand, within PGA1_c06670 at 684.987 kb on + strand, within PGA1_c06670 at 685.093 kb on - strand, within PGA1_c06670 at 685.124 kb on + strand, within PGA1_c06670 at 685.374 kb on + strand, within PGA1_c06670
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 681,445 + PGA1_c06640 0.78 +1.3 681,453 - PGA1_c06640 0.79 +1.5 681,522 + PGA1_c06640 0.90 +0.8 681,584 + -0.2 681,598 - -0.7 681,611 - +1.2 681,611 - -1.2 681,637 + -1.0 681,637 + +2.6 681,637 + +1.2 681,637 + +0.7 681,637 + +0.1 681,637 + +2.1 681,645 - +0.1 681,645 - -0.9 681,645 - +2.1 681,645 - +1.0 681,645 - -0.5 681,645 - -0.7 681,669 + +0.8 681,691 - +0.4 681,691 - +0.1 681,699 - +0.3 681,710 - +2.0 681,730 + -1.5 681,736 - +1.1 681,760 - +1.1 681,813 + +1.8 681,922 - PGA1_c06650 0.24 +1.3 682,032 + PGA1_c06650 0.41 +1.9 682,138 + PGA1_c06650 0.57 -0.2 682,138 + PGA1_c06650 0.57 +0.0 682,146 - PGA1_c06650 0.58 -1.2 682,220 - PGA1_c06650 0.69 -0.6 682,292 + PGA1_c06650 0.80 -0.0 682,415 + -0.2 682,415 + -0.6 682,423 - +0.2 682,423 - +1.2 682,440 - -2.3 682,481 + +0.7 682,844 + PGA1_c06660 0.21 +0.7 682,844 + PGA1_c06660 0.21 -0.3 682,847 + PGA1_c06660 0.21 -1.9 682,899 + PGA1_c06660 0.24 +0.2 682,987 - PGA1_c06660 0.28 -0.5 683,024 + PGA1_c06660 0.30 +0.8 683,032 - PGA1_c06660 0.30 -1.5 683,086 - PGA1_c06660 0.33 +0.1 683,086 - PGA1_c06660 0.33 +0.8 683,197 + PGA1_c06660 0.39 -1.0 683,199 - PGA1_c06660 0.39 -1.2 683,199 - PGA1_c06660 0.39 +0.1 683,260 + PGA1_c06660 0.42 +0.4 683,410 + PGA1_c06660 0.50 +0.1 683,422 - PGA1_c06660 0.51 -1.3 683,473 + PGA1_c06660 0.53 +2.4 683,602 + PGA1_c06660 0.60 -2.6 683,610 - PGA1_c06660 0.60 -0.4 683,629 + PGA1_c06660 0.61 -0.0 683,631 + PGA1_c06660 0.61 +0.2 683,631 + PGA1_c06660 0.61 -0.1 683,639 - PGA1_c06660 0.62 +0.8 683,650 + PGA1_c06660 0.62 +1.3 683,668 - PGA1_c06660 0.63 -1.7 683,727 - PGA1_c06660 0.66 +0.0 683,729 - PGA1_c06660 0.66 +0.9 683,729 - PGA1_c06660 0.66 -1.3 683,738 + PGA1_c06660 0.67 +0.3 683,757 + PGA1_c06660 0.68 -2.9 683,797 - PGA1_c06660 0.70 -0.2 683,797 - PGA1_c06660 0.70 +0.3 683,797 - PGA1_c06660 0.70 -0.2 683,822 + PGA1_c06660 0.71 -1.8 683,846 + PGA1_c06660 0.72 -2.9 683,848 - PGA1_c06660 0.73 +0.4 683,849 - PGA1_c06660 0.73 +0.8 683,849 - PGA1_c06660 0.73 -1.4 683,939 - PGA1_c06660 0.77 -1.8 683,999 + PGA1_c06660 0.80 -2.1 684,007 - PGA1_c06660 0.81 +0.6 684,085 - PGA1_c06660 0.85 -0.0 684,232 + +1.1 684,328 + +0.2 684,328 + -0.8 684,359 + -0.2 684,359 + -1.2 684,359 + +0.6 684,359 + +0.7 684,359 + -1.2 684,367 - -0.2 684,367 - -0.0 684,367 - -1.5 684,367 - -0.8 684,367 - -2.2 684,367 - +0.3 684,367 - +0.5 684,367 - +0.8 684,367 - -0.2 684,369 + -0.7 684,371 + -0.8 684,377 - -0.3 684,388 - -1.5 684,399 + -1.3 684,399 + -0.3 684,407 - -0.6 684,445 - +1.8 684,455 - +1.3 684,494 + +0.1 684,499 + -0.7 684,507 - -0.2 684,507 - +1.2 684,523 - -0.2 684,572 - +0.8 684,590 - -0.2 684,681 + PGA1_c06670 0.14 -0.8 684,699 + PGA1_c06670 0.16 -1.2 684,700 + PGA1_c06670 0.16 -2.2 684,707 - PGA1_c06670 0.16 -2.8 684,739 + PGA1_c06670 0.19 +1.2 684,739 + PGA1_c06670 0.19 +1.2 684,987 + PGA1_c06670 0.40 +1.6 685,093 - PGA1_c06670 0.49 -2.2 685,124 + PGA1_c06670 0.52 -1.5 685,374 + PGA1_c06670 0.74 +2.4
Or see this region's nucleotide sequence