Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00660

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00640 and PGA1_c00650 are separated by 109 nucleotidesPGA1_c00650 and PGA1_c00660 are separated by 106 nucleotidesPGA1_c00660 and PGA1_c00670 overlap by 4 nucleotidesPGA1_c00670 and PGA1_c00680 are separated by 6 nucleotides PGA1_c00640: PGA1_c00640 - putative elongation factor G, at 64,008 to 66,002 _c00640 PGA1_c00650: PGA1_c00650 - Uncharacterized conserved protein, at 66,112 to 66,639 _c00650 PGA1_c00660: PGA1_c00660 - transcriptional regulator, lysR family, at 66,746 to 67,624 _c00660 PGA1_c00670: PGA1_c00670 - putative integral membrane protein, at 67,621 to 68,529 _c00670 PGA1_c00680: PGA1_c00680 - transcriptional regulator, arsR family, at 68,536 to 68,883 _c00680 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 65.763 kb on + strand, within PGA1_c00640at 65.778 kb on - strand, within PGA1_c00640at 65.799 kb on + strand, within PGA1_c00640at 65.826 kb on + strandat 65.831 kb on + strandat 65.831 kb on + strandat 65.839 kb on - strandat 65.839 kb on - strandat 65.839 kb on - strandat 65.845 kb on + strandat 65.845 kb on + strandat 65.845 kb on + strandat 65.901 kb on + strandat 65.910 kb on + strandat 65.918 kb on + strandat 65.919 kb on - strandat 66.007 kb on + strandat 66.052 kb on + strandat 66.103 kb on - strandat 66.113 kb on - strandat 66.127 kb on - strandat 66.127 kb on - strandat 66.146 kb on - strandat 66.201 kb on + strand, within PGA1_c00650at 66.202 kb on - strand, within PGA1_c00650at 66.209 kb on + strand, within PGA1_c00650at 66.220 kb on - strand, within PGA1_c00650at 66.227 kb on + strand, within PGA1_c00650at 66.235 kb on - strand, within PGA1_c00650at 66.296 kb on + strand, within PGA1_c00650at 66.296 kb on + strand, within PGA1_c00650at 66.336 kb on - strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.338 kb on + strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.346 kb on - strand, within PGA1_c00650at 66.391 kb on - strand, within PGA1_c00650at 66.427 kb on + strand, within PGA1_c00650at 66.442 kb on - strand, within PGA1_c00650at 66.474 kb on + strand, within PGA1_c00650at 66.518 kb on - strand, within PGA1_c00650at 66.518 kb on - strand, within PGA1_c00650at 66.523 kb on - strand, within PGA1_c00650at 66.540 kb on - strand, within PGA1_c00650at 66.569 kb on + strand, within PGA1_c00650at 66.569 kb on + strand, within PGA1_c00650at 66.574 kb on + strand, within PGA1_c00650at 66.577 kb on - strand, within PGA1_c00650at 66.582 kb on - strand, within PGA1_c00650at 66.641 kb on - strandat 66.641 kb on - strandat 66.641 kb on - strandat 66.641 kb on - strandat 66.705 kb on + strandat 66.730 kb on - strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.732 kb on + strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.740 kb on - strandat 66.745 kb on - strandat 66.771 kb on - strandat 66.850 kb on - strand, within PGA1_c00660at 66.871 kb on - strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.955 kb on + strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.963 kb on - strand, within PGA1_c00660at 66.991 kb on + strand, within PGA1_c00660at 66.998 kb on + strand, within PGA1_c00660at 66.999 kb on + strand, within PGA1_c00660at 67.102 kb on - strand, within PGA1_c00660at 67.208 kb on + strand, within PGA1_c00660at 67.238 kb on + strand, within PGA1_c00660at 67.267 kb on + strand, within PGA1_c00660at 67.284 kb on - strand, within PGA1_c00660at 67.291 kb on - strand, within PGA1_c00660at 67.329 kb on - strand, within PGA1_c00660at 67.421 kb on - strand, within PGA1_c00660at 67.429 kb on + strand, within PGA1_c00660at 67.429 kb on + strand, within PGA1_c00660at 67.437 kb on - strand, within PGA1_c00660at 67.459 kb on - strand, within PGA1_c00660at 67.487 kb on - strand, within PGA1_c00660at 67.498 kb on - strand, within PGA1_c00660at 67.531 kb on - strand, within PGA1_c00660at 67.550 kb on + strandat 67.550 kb on + strandat 67.558 kb on - strandat 67.571 kb on - strandat 67.595 kb on - strandat 67.609 kb on + strandat 67.609 kb on + strandat 67.617 kb on - strandat 67.617 kb on - strandat 67.642 kb on - strandat 67.659 kb on - strandat 67.694 kb on + strandat 67.717 kb on + strand, within PGA1_c00670at 67.718 kb on + strand, within PGA1_c00670at 67.721 kb on - strand, within PGA1_c00670at 67.728 kb on + strand, within PGA1_c00670at 67.728 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.788 kb on - strand, within PGA1_c00670at 67.792 kb on + strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.864 kb on + strand, within PGA1_c00670at 67.902 kb on - strand, within PGA1_c00670at 67.907 kb on + strand, within PGA1_c00670at 67.912 kb on + strand, within PGA1_c00670at 67.940 kb on - strand, within PGA1_c00670at 67.971 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.998 kb on - strand, within PGA1_c00670at 67.998 kb on - strand, within PGA1_c00670at 68.046 kb on + strand, within PGA1_c00670at 68.109 kb on + strand, within PGA1_c00670at 68.120 kb on + strand, within PGA1_c00670at 68.147 kb on + strand, within PGA1_c00670at 68.167 kb on + strand, within PGA1_c00670at 68.255 kb on + strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.303 kb on - strand, within PGA1_c00670at 68.312 kb on + strand, within PGA1_c00670at 68.312 kb on + strand, within PGA1_c00670at 68.312 kb on + strand, within PGA1_c00670at 68.330 kb on + strand, within PGA1_c00670at 68.344 kb on - strand, within PGA1_c00670at 68.354 kb on - strand, within PGA1_c00670at 68.358 kb on + strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.367 kb on - strand, within PGA1_c00670at 68.373 kb on - strand, within PGA1_c00670at 68.375 kb on + strand, within PGA1_c00670at 68.375 kb on + strand, within PGA1_c00670at 68.377 kb on - strand, within PGA1_c00670at 68.377 kb on - strand, within PGA1_c00670at 68.384 kb on - strand, within PGA1_c00670at 68.418 kb on - strand, within PGA1_c00670at 68.423 kb on - strand, within PGA1_c00670at 68.514 kb on + strandat 68.532 kb on - strandat 68.548 kb on + strandat 68.553 kb on - strandat 68.578 kb on - strand, within PGA1_c00680at 68.584 kb on - strand, within PGA1_c00680at 68.612 kb on + strand, within PGA1_c00680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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65,763 + PGA1_c00640 0.88 -0.0
65,778 - PGA1_c00640 0.89 -1.6
65,799 + PGA1_c00640 0.90 +0.4
65,826 + +1.3
65,831 + -0.8
65,831 + +0.0
65,839 - +0.2
65,839 - -0.8
65,839 - -0.6
65,845 + +0.4
65,845 + -0.5
65,845 + -1.0
65,901 + -0.1
65,910 + -0.3
65,918 + -3.5
65,919 - -1.2
66,007 + +0.4
66,052 + +0.8
66,103 - +0.6
66,113 - -0.6
66,127 - -1.8
66,127 - +0.8
66,146 - -0.8
66,201 + PGA1_c00650 0.17 +0.6
66,202 - PGA1_c00650 0.17 -0.2
66,209 + PGA1_c00650 0.18 +0.9
66,220 - PGA1_c00650 0.20 -0.1
66,227 + PGA1_c00650 0.22 +0.9
66,235 - PGA1_c00650 0.23 +0.8
66,296 + PGA1_c00650 0.35 +0.7
66,296 + PGA1_c00650 0.35 +1.8
66,336 - PGA1_c00650 0.42 +0.3
66,338 + PGA1_c00650 0.43 +0.9
66,338 + PGA1_c00650 0.43 +0.5
66,338 + PGA1_c00650 0.43 +0.1
66,338 + PGA1_c00650 0.43 +0.6
66,338 + PGA1_c00650 0.43 -0.2
66,338 + PGA1_c00650 0.43 -1.3
66,338 + PGA1_c00650 0.43 +0.2
66,338 + PGA1_c00650 0.43 -1.0
66,338 + PGA1_c00650 0.43 -2.0
66,338 + PGA1_c00650 0.43 -2.5
66,338 + PGA1_c00650 0.43 +0.6
66,338 + PGA1_c00650 0.43 -0.2
66,338 + PGA1_c00650 0.43 +0.4
66,338 + PGA1_c00650 0.43 -0.0
66,338 + PGA1_c00650 0.43 -0.4
66,338 + PGA1_c00650 0.43 +0.2
66,346 - PGA1_c00650 0.44 -0.1
66,346 - PGA1_c00650 0.44 +0.4
66,346 - PGA1_c00650 0.44 +0.4
66,346 - PGA1_c00650 0.44 -0.4
66,346 - PGA1_c00650 0.44 -0.5
66,346 - PGA1_c00650 0.44 +1.0
66,391 - PGA1_c00650 0.53 +0.3
66,427 + PGA1_c00650 0.60 -0.2
66,442 - PGA1_c00650 0.62 -0.2
66,474 + PGA1_c00650 0.69 +1.2
66,518 - PGA1_c00650 0.77 +0.6
66,518 - PGA1_c00650 0.77 -0.9
66,523 - PGA1_c00650 0.78 -1.5
66,540 - PGA1_c00650 0.81 +1.9
66,569 + PGA1_c00650 0.87 +0.4
66,569 + PGA1_c00650 0.87 +0.0
66,574 + PGA1_c00650 0.88 -2.0
66,577 - PGA1_c00650 0.88 +0.9
66,582 - PGA1_c00650 0.89 -0.7
66,641 - -0.7
66,641 - +1.7
66,641 - +0.5
66,641 - +0.6
66,705 + -1.4
66,730 - +0.5
66,732 + +0.0
66,732 + -0.5
66,732 + -1.4
66,732 + -0.6
66,732 + -0.3
66,732 + +1.4
66,732 + +1.6
66,740 - -2.5
66,740 - +0.1
66,740 - -0.2
66,740 - -0.4
66,740 - +1.0
66,740 - -0.5
66,740 - -0.8
66,740 - +0.1
66,740 - -1.3
66,740 - -1.1
66,745 - +0.8
66,771 - -0.6
66,850 - PGA1_c00660 0.12 +0.7
66,871 - PGA1_c00660 0.14 -2.5
66,955 + PGA1_c00660 0.24 -0.4
66,955 + PGA1_c00660 0.24 -1.5
66,955 + PGA1_c00660 0.24 -1.0
66,955 + PGA1_c00660 0.24 +0.5
66,963 - PGA1_c00660 0.25 -0.6
66,963 - PGA1_c00660 0.25 -1.0
66,963 - PGA1_c00660 0.25 -1.0
66,963 - PGA1_c00660 0.25 -1.8
66,991 + PGA1_c00660 0.28 -0.3
66,998 + PGA1_c00660 0.29 -0.6
66,999 + PGA1_c00660 0.29 +0.4
67,102 - PGA1_c00660 0.41 -0.2
67,208 + PGA1_c00660 0.53 +0.5
67,238 + PGA1_c00660 0.56 +0.1
67,267 + PGA1_c00660 0.59 +1.0
67,284 - PGA1_c00660 0.61 -3.2
67,291 - PGA1_c00660 0.62 -3.3
67,329 - PGA1_c00660 0.66 -1.2
67,421 - PGA1_c00660 0.77 +0.9
67,429 + PGA1_c00660 0.78 +0.3
67,429 + PGA1_c00660 0.78 -1.5
67,437 - PGA1_c00660 0.79 -2.0
67,459 - PGA1_c00660 0.81 +0.4
67,487 - PGA1_c00660 0.84 +0.3
67,498 - PGA1_c00660 0.86 +0.6
67,531 - PGA1_c00660 0.89 +0.1
67,550 + -0.5
67,550 + -0.7
67,558 - -1.9
67,571 - -0.7
67,595 - -0.3
67,609 + -0.6
67,609 + -1.3
67,617 - +2.2
67,617 - +0.2
67,642 - +0.2
67,659 - -0.5
67,694 + +1.0
67,717 + PGA1_c00670 0.11 +1.4
67,718 + PGA1_c00670 0.11 -2.0
67,721 - PGA1_c00670 0.11 -0.4
67,728 + PGA1_c00670 0.12 +0.2
67,728 + PGA1_c00670 0.12 -0.1
67,787 + PGA1_c00670 0.18 +0.2
67,787 + PGA1_c00670 0.18 -0.2
67,787 + PGA1_c00670 0.18 +0.2
67,787 + PGA1_c00670 0.18 -0.1
67,787 + PGA1_c00670 0.18 -0.6
67,787 + PGA1_c00670 0.18 +0.2
67,787 + PGA1_c00670 0.18 -0.2
67,787 + PGA1_c00670 0.18 +0.3
67,787 + PGA1_c00670 0.18 -0.1
67,787 + PGA1_c00670 0.18 -0.7
67,787 + PGA1_c00670 0.18 +0.7
67,787 + PGA1_c00670 0.18 +0.8
67,787 + PGA1_c00670 0.18 -1.0
67,787 + PGA1_c00670 0.18 +1.1
67,788 - PGA1_c00670 0.18 +0.1
67,792 + PGA1_c00670 0.19 -0.6
67,795 - PGA1_c00670 0.19 -0.2
67,795 - PGA1_c00670 0.19 -0.2
67,795 - PGA1_c00670 0.19 +0.3
67,795 - PGA1_c00670 0.19 +0.4
67,795 - PGA1_c00670 0.19 -0.6
67,795 - PGA1_c00670 0.19 -2.2
67,795 - PGA1_c00670 0.19 -1.5
67,795 - PGA1_c00670 0.19 +0.4
67,795 - PGA1_c00670 0.19 +0.9
67,795 - PGA1_c00670 0.19 +0.2
67,795 - PGA1_c00670 0.19 +0.3
67,795 - PGA1_c00670 0.19 +0.3
67,795 - PGA1_c00670 0.19 -0.6
67,864 + PGA1_c00670 0.27 -0.5
67,902 - PGA1_c00670 0.31 -1.4
67,907 + PGA1_c00670 0.31 +1.0
67,912 + PGA1_c00670 0.32 -1.3
67,940 - PGA1_c00670 0.35 -0.2
67,971 + PGA1_c00670 0.39 +0.0
67,990 + PGA1_c00670 0.41 -0.5
67,990 + PGA1_c00670 0.41 -0.6
67,990 + PGA1_c00670 0.41 +0.7
67,990 + PGA1_c00670 0.41 -0.1
67,990 + PGA1_c00670 0.41 -1.3
67,998 - PGA1_c00670 0.41 +0.5
67,998 - PGA1_c00670 0.41 -0.4
68,046 + PGA1_c00670 0.47 -1.0
68,109 + PGA1_c00670 0.54 +0.0
68,120 + PGA1_c00670 0.55 -2.0
68,147 + PGA1_c00670 0.58 -0.5
68,167 + PGA1_c00670 0.60 -0.6
68,255 + PGA1_c00670 0.70 +1.0
68,288 - PGA1_c00670 0.73 -0.3
68,288 - PGA1_c00670 0.73 +0.1
68,288 - PGA1_c00670 0.73 +1.7
68,288 - PGA1_c00670 0.73 -1.1
68,303 - PGA1_c00670 0.75 +0.3
68,312 + PGA1_c00670 0.76 +0.2
68,312 + PGA1_c00670 0.76 -0.7
68,312 + PGA1_c00670 0.76 +0.2
68,330 + PGA1_c00670 0.78 +0.2
68,344 - PGA1_c00670 0.80 +0.2
68,354 - PGA1_c00670 0.81 +0.2
68,358 + PGA1_c00670 0.81 +0.6
68,366 - PGA1_c00670 0.82 +0.0
68,366 - PGA1_c00670 0.82 +1.2
68,366 - PGA1_c00670 0.82 -0.3
68,366 - PGA1_c00670 0.82 +0.0
68,367 - PGA1_c00670 0.82 +1.3
68,373 - PGA1_c00670 0.83 +0.6
68,375 + PGA1_c00670 0.83 -0.3
68,375 + PGA1_c00670 0.83 -1.6
68,377 - PGA1_c00670 0.83 -1.1
68,377 - PGA1_c00670 0.83 +0.3
68,384 - PGA1_c00670 0.84 +0.5
68,418 - PGA1_c00670 0.88 +0.8
68,423 - PGA1_c00670 0.88 +0.4
68,514 + -0.5
68,532 - +4.0
68,548 + +3.0
68,553 - -0.1
68,578 - PGA1_c00680 0.12 +0.1
68,584 - PGA1_c00680 0.14 -0.8
68,612 + PGA1_c00680 0.22 -0.6

Or see this region's nucleotide sequence