Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06340 and PGA1_c06350 are separated by 25 nucleotides PGA1_c06350 and PGA1_c06360 are separated by 241 nucleotides PGA1_c06360 and PGA1_c06370 are separated by 219 nucleotides
PGA1_c06340: PGA1_c06340 - putative FAD linked oxidase, at 648,677 to 650,101
_c06340
PGA1_c06350: PGA1_c06350 - putative MFS-type transporter, at 650,127 to 651,347
_c06350
PGA1_c06360: PGA1_c06360 - Secreted and surface protein containing fasciclin-like repeats, at 651,589 to 652,065
_c06360
PGA1_c06370: PGA1_c06370 - adenine phosphoribosyltransferase Apt, at 652,285 to 652,824
_c06370
Position (kb) 650
651
652 Strain fitness (log2 ratio) -2
-1
0
1
2 at 650.134 kb on + strand at 650.264 kb on - strand, within PGA1_c06350 at 650.277 kb on + strand, within PGA1_c06350 at 650.366 kb on + strand, within PGA1_c06350 at 650.374 kb on - strand, within PGA1_c06350 at 650.381 kb on - strand, within PGA1_c06350 at 650.428 kb on - strand, within PGA1_c06350 at 650.460 kb on - strand, within PGA1_c06350 at 650.462 kb on + strand, within PGA1_c06350 at 650.485 kb on - strand, within PGA1_c06350 at 650.579 kb on + strand, within PGA1_c06350 at 650.604 kb on + strand, within PGA1_c06350 at 650.718 kb on - strand, within PGA1_c06350 at 650.749 kb on + strand, within PGA1_c06350 at 650.794 kb on - strand, within PGA1_c06350 at 650.835 kb on + strand, within PGA1_c06350 at 650.843 kb on - strand, within PGA1_c06350 at 650.923 kb on + strand, within PGA1_c06350 at 650.938 kb on + strand, within PGA1_c06350 at 651.084 kb on + strand, within PGA1_c06350 at 651.097 kb on - strand, within PGA1_c06350 at 651.153 kb on + strand, within PGA1_c06350 at 651.158 kb on + strand, within PGA1_c06350 at 651.178 kb on + strand, within PGA1_c06350 at 651.189 kb on - strand, within PGA1_c06350 at 651.216 kb on + strand, within PGA1_c06350 at 651.402 kb on - strand at 651.412 kb on - strand at 651.482 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.545 kb on + strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.636 kb on - strand at 651.685 kb on + strand, within PGA1_c06360 at 651.693 kb on - strand, within PGA1_c06360 at 651.693 kb on - strand, within PGA1_c06360 at 651.698 kb on - strand, within PGA1_c06360 at 651.709 kb on + strand, within PGA1_c06360 at 651.719 kb on - strand, within PGA1_c06360 at 651.763 kb on + strand, within PGA1_c06360 at 651.771 kb on - strand, within PGA1_c06360 at 651.868 kb on + strand, within PGA1_c06360 at 651.899 kb on + strand, within PGA1_c06360 at 651.907 kb on - strand, within PGA1_c06360 at 651.908 kb on - strand, within PGA1_c06360 at 651.923 kb on + strand, within PGA1_c06360 at 651.926 kb on - strand, within PGA1_c06360 at 651.926 kb on - strand, within PGA1_c06360 at 651.993 kb on - strand, within PGA1_c06360 at 652.042 kb on + strand at 652.042 kb on + strand at 652.050 kb on - strand at 652.068 kb on + strand at 652.080 kb on + strand at 652.088 kb on - strand at 652.101 kb on - strand at 652.113 kb on + strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.300 kb on - strand at 652.306 kb on - strand at 652.317 kb on + strand at 652.341 kb on - strand, within PGA1_c06370
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 650,134 + +0.1 650,264 - PGA1_c06350 0.11 +1.3 650,277 + PGA1_c06350 0.12 +0.4 650,366 + PGA1_c06350 0.20 +2.7 650,374 - PGA1_c06350 0.20 +0.6 650,381 - PGA1_c06350 0.21 -0.2 650,428 - PGA1_c06350 0.25 +0.2 650,460 - PGA1_c06350 0.27 +1.5 650,462 + PGA1_c06350 0.27 -1.6 650,485 - PGA1_c06350 0.29 -0.9 650,579 + PGA1_c06350 0.37 -0.9 650,604 + PGA1_c06350 0.39 +0.8 650,718 - PGA1_c06350 0.48 +1.6 650,749 + PGA1_c06350 0.51 +0.6 650,794 - PGA1_c06350 0.55 +0.2 650,835 + PGA1_c06350 0.58 +1.1 650,843 - PGA1_c06350 0.59 -1.7 650,923 + PGA1_c06350 0.65 +0.6 650,938 + PGA1_c06350 0.66 -0.3 651,084 + PGA1_c06350 0.78 +0.7 651,097 - PGA1_c06350 0.79 +1.9 651,153 + PGA1_c06350 0.84 -2.1 651,158 + PGA1_c06350 0.84 -0.9 651,178 + PGA1_c06350 0.86 -1.0 651,189 - PGA1_c06350 0.87 -0.1 651,216 + PGA1_c06350 0.89 +0.4 651,402 - +0.4 651,412 - -0.2 651,482 + -1.7 651,537 + -0.9 651,537 + +0.9 651,537 + +0.5 651,537 + +0.5 651,537 + +1.2 651,537 + +1.3 651,545 + +0.2 651,545 - +0.8 651,545 - +0.1 651,545 - -0.5 651,545 - +0.7 651,545 - -0.6 651,545 - +0.3 651,545 - -0.8 651,636 - -1.1 651,685 + PGA1_c06360 0.20 -0.7 651,693 - PGA1_c06360 0.22 +0.9 651,693 - PGA1_c06360 0.22 +1.0 651,698 - PGA1_c06360 0.23 +1.4 651,709 + PGA1_c06360 0.25 +0.9 651,719 - PGA1_c06360 0.27 -0.9 651,763 + PGA1_c06360 0.36 -2.2 651,771 - PGA1_c06360 0.38 +0.1 651,868 + PGA1_c06360 0.58 -0.3 651,899 + PGA1_c06360 0.65 -0.6 651,907 - PGA1_c06360 0.67 +0.1 651,908 - PGA1_c06360 0.67 +0.8 651,923 + PGA1_c06360 0.70 +1.0 651,926 - PGA1_c06360 0.71 -0.2 651,926 - PGA1_c06360 0.71 +0.9 651,993 - PGA1_c06360 0.85 -0.8 652,042 + +0.7 652,042 + -0.7 652,050 - +1.2 652,068 + +0.1 652,080 + -1.8 652,088 - -1.5 652,101 - +0.9 652,113 + -0.7 652,121 - +0.2 652,121 - -2.3 652,121 - +2.1 652,300 - -0.2 652,306 - +0.2 652,317 + +1.3 652,341 - PGA1_c06370 0.10 -0.1
Or see this region's nucleotide sequence