Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00630 and PGA1_c00640 are separated by 491 nucleotides PGA1_c00640 and PGA1_c00650 are separated by 109 nucleotides PGA1_c00650 and PGA1_c00660 are separated by 106 nucleotides
PGA1_c00630: PGA1_c00630 - signal recognition particle protein Ffh, at 61,993 to 63,516
_c00630
PGA1_c00640: PGA1_c00640 - putative elongation factor G, at 64,008 to 66,002
_c00640
PGA1_c00650: PGA1_c00650 - Uncharacterized conserved protein, at 66,112 to 66,639
_c00650
PGA1_c00660: PGA1_c00660 - transcriptional regulator, lysR family, at 66,746 to 67,624
_c00660
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.739 kb on + strand at 63.739 kb on + strand at 63.739 kb on + strand at 63.739 kb on + strand at 63.744 kb on + strand at 63.747 kb on - strand at 63.751 kb on + strand at 63.759 kb on - strand at 63.759 kb on - strand at 63.812 kb on - strand at 63.838 kb on + strand at 63.903 kb on + strand at 63.911 kb on - strand at 63.931 kb on + strand at 63.931 kb on + strand at 63.939 kb on - strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.010 kb on - strand at 64.010 kb on - strand at 64.010 kb on - strand at 64.058 kb on + strand at 64.073 kb on - strand at 64.077 kb on - strand at 64.084 kb on + strand at 64.099 kb on - strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.119 kb on + strand at 64.132 kb on - strand at 64.154 kb on - strand at 64.154 kb on - strand at 64.159 kb on - strand at 64.159 kb on - strand at 64.190 kb on - strand at 64.203 kb on + strand at 64.346 kb on - strand, within PGA1_c00640 at 64.394 kb on + strand, within PGA1_c00640 at 64.394 kb on + strand, within PGA1_c00640 at 64.399 kb on + strand, within PGA1_c00640 at 64.407 kb on - strand, within PGA1_c00640 at 64.440 kb on - strand, within PGA1_c00640 at 64.442 kb on + strand, within PGA1_c00640 at 64.496 kb on + strand, within PGA1_c00640 at 64.496 kb on + strand, within PGA1_c00640 at 64.498 kb on + strand, within PGA1_c00640 at 64.499 kb on - strand, within PGA1_c00640 at 64.506 kb on - strand, within PGA1_c00640 at 64.506 kb on - strand, within PGA1_c00640 at 64.529 kb on - strand, within PGA1_c00640 at 64.542 kb on + strand, within PGA1_c00640 at 64.555 kb on + strand, within PGA1_c00640 at 64.624 kb on - strand, within PGA1_c00640 at 64.646 kb on - strand, within PGA1_c00640 at 64.696 kb on + strand, within PGA1_c00640 at 64.781 kb on - strand, within PGA1_c00640 at 64.781 kb on - strand, within PGA1_c00640 at 64.799 kb on + strand, within PGA1_c00640 at 64.822 kb on - strand, within PGA1_c00640 at 64.857 kb on - strand, within PGA1_c00640 at 64.895 kb on + strand, within PGA1_c00640 at 64.928 kb on + strand, within PGA1_c00640 at 64.928 kb on + strand, within PGA1_c00640 at 64.940 kb on + strand, within PGA1_c00640 at 64.940 kb on + strand, within PGA1_c00640 at 64.948 kb on - strand, within PGA1_c00640 at 64.998 kb on + strand, within PGA1_c00640 at 65.029 kb on + strand, within PGA1_c00640 at 65.029 kb on + strand, within PGA1_c00640 at 65.037 kb on - strand, within PGA1_c00640 at 65.037 kb on - strand, within PGA1_c00640 at 65.039 kb on + strand, within PGA1_c00640 at 65.071 kb on + strand, within PGA1_c00640 at 65.125 kb on + strand, within PGA1_c00640 at 65.127 kb on + strand, within PGA1_c00640 at 65.159 kb on + strand, within PGA1_c00640 at 65.159 kb on + strand, within PGA1_c00640 at 65.167 kb on - strand, within PGA1_c00640 at 65.174 kb on - strand, within PGA1_c00640 at 65.176 kb on + strand, within PGA1_c00640 at 65.250 kb on + strand, within PGA1_c00640 at 65.258 kb on - strand, within PGA1_c00640 at 65.335 kb on + strand, within PGA1_c00640 at 65.335 kb on + strand, within PGA1_c00640 at 65.367 kb on + strand, within PGA1_c00640 at 65.454 kb on + strand, within PGA1_c00640 at 65.462 kb on - strand, within PGA1_c00640 at 65.462 kb on - strand, within PGA1_c00640 at 65.462 kb on - strand, within PGA1_c00640 at 65.507 kb on + strand, within PGA1_c00640 at 65.507 kb on + strand, within PGA1_c00640 at 65.508 kb on + strand, within PGA1_c00640 at 65.515 kb on + strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.516 kb on - strand, within PGA1_c00640 at 65.520 kb on + strand, within PGA1_c00640 at 65.523 kb on + strand, within PGA1_c00640 at 65.533 kb on - strand, within PGA1_c00640 at 65.533 kb on - strand, within PGA1_c00640 at 65.533 kb on - strand, within PGA1_c00640 at 65.580 kb on + strand, within PGA1_c00640 at 65.615 kb on - strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.633 kb on + strand, within PGA1_c00640 at 65.641 kb on - strand, within PGA1_c00640 at 65.680 kb on + strand, within PGA1_c00640 at 65.716 kb on - strand, within PGA1_c00640 at 65.763 kb on + strand, within PGA1_c00640 at 65.778 kb on - strand, within PGA1_c00640 at 65.799 kb on + strand, within PGA1_c00640 at 65.826 kb on + strand at 65.831 kb on + strand at 65.831 kb on + strand at 65.839 kb on - strand at 65.839 kb on - strand at 65.839 kb on - strand at 65.845 kb on + strand at 65.845 kb on + strand at 65.845 kb on + strand at 65.901 kb on + strand at 65.910 kb on + strand at 65.918 kb on + strand at 65.919 kb on - strand at 66.007 kb on + strand at 66.052 kb on + strand at 66.103 kb on - strand at 66.113 kb on - strand at 66.127 kb on - strand at 66.127 kb on - strand at 66.146 kb on - strand at 66.201 kb on + strand, within PGA1_c00650 at 66.202 kb on - strand, within PGA1_c00650 at 66.209 kb on + strand, within PGA1_c00650 at 66.220 kb on - strand, within PGA1_c00650 at 66.227 kb on + strand, within PGA1_c00650 at 66.235 kb on - strand, within PGA1_c00650 at 66.296 kb on + strand, within PGA1_c00650 at 66.296 kb on + strand, within PGA1_c00650 at 66.336 kb on - strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.391 kb on - strand, within PGA1_c00650 at 66.427 kb on + strand, within PGA1_c00650 at 66.442 kb on - strand, within PGA1_c00650 at 66.474 kb on + strand, within PGA1_c00650 at 66.518 kb on - strand, within PGA1_c00650 at 66.518 kb on - strand, within PGA1_c00650 at 66.523 kb on - strand, within PGA1_c00650 at 66.540 kb on - strand, within PGA1_c00650 at 66.569 kb on + strand, within PGA1_c00650 at 66.569 kb on + strand, within PGA1_c00650 at 66.574 kb on + strand, within PGA1_c00650 at 66.577 kb on - strand, within PGA1_c00650 at 66.582 kb on - strand, within PGA1_c00650 at 66.641 kb on - strand at 66.641 kb on - strand at 66.641 kb on - strand at 66.641 kb on - strand at 66.705 kb on + strand at 66.730 kb on - strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.745 kb on - strand at 66.771 kb on - strand at 66.850 kb on - strand, within PGA1_c00660 at 66.871 kb on - strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.991 kb on + strand, within PGA1_c00660 at 66.998 kb on + strand, within PGA1_c00660 at 66.999 kb on + strand, within PGA1_c00660
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 63,739 + -0.3 63,739 + -0.1 63,739 + +0.9 63,739 + -0.1 63,744 + -0.4 63,747 - -1.2 63,751 + +0.2 63,759 - +0.9 63,759 - +0.1 63,812 - +0.6 63,838 + +0.8 63,903 + -0.1 63,911 - -0.4 63,931 + -1.4 63,931 + -1.5 63,939 - -0.6 63,997 + -0.5 63,997 + -0.6 63,997 + +0.6 63,997 + +0.7 63,997 + -0.4 63,997 + +0.1 63,997 + +1.4 63,997 + +0.4 64,002 + -0.2 64,002 + +0.0 64,005 - +0.5 64,005 - +0.9 64,005 - +0.0 64,005 - +0.2 64,005 - +0.5 64,010 - +0.0 64,010 - -0.7 64,010 - -3.3 64,058 + +0.7 64,073 - -0.1 64,077 - -1.0 64,084 + +1.0 64,099 - -2.5 64,106 + -0.2 64,106 + -0.6 64,106 + -1.0 64,106 + -2.3 64,106 + +0.3 64,106 + -1.8 64,106 + +1.4 64,106 + +0.0 64,106 + +0.1 64,106 + -0.1 64,114 - +0.0 64,114 - -0.4 64,114 - -0.5 64,114 - -1.8 64,114 - -2.0 64,114 - -1.1 64,114 - +0.3 64,114 - +0.0 64,114 - -1.8 64,119 + +0.6 64,132 - -0.6 64,154 - +0.4 64,154 - +2.2 64,159 - -1.8 64,159 - +0.5 64,190 - +1.0 64,203 + +1.2 64,346 - PGA1_c00640 0.17 -0.7 64,394 + PGA1_c00640 0.19 +0.0 64,394 + PGA1_c00640 0.19 +0.0 64,399 + PGA1_c00640 0.20 +1.4 64,407 - PGA1_c00640 0.20 +0.2 64,440 - PGA1_c00640 0.22 -1.2 64,442 + PGA1_c00640 0.22 +1.3 64,496 + PGA1_c00640 0.24 +0.6 64,496 + PGA1_c00640 0.24 -0.4 64,498 + PGA1_c00640 0.25 -2.5 64,499 - PGA1_c00640 0.25 -0.1 64,506 - PGA1_c00640 0.25 -0.6 64,506 - PGA1_c00640 0.25 +0.1 64,529 - PGA1_c00640 0.26 -0.2 64,542 + PGA1_c00640 0.27 -0.4 64,555 + PGA1_c00640 0.27 -1.1 64,624 - PGA1_c00640 0.31 -1.3 64,646 - PGA1_c00640 0.32 +1.3 64,696 + PGA1_c00640 0.34 -2.0 64,781 - PGA1_c00640 0.39 +1.4 64,781 - PGA1_c00640 0.39 +0.7 64,799 + PGA1_c00640 0.40 +0.2 64,822 - PGA1_c00640 0.41 -1.0 64,857 - PGA1_c00640 0.43 -0.5 64,895 + PGA1_c00640 0.44 -1.0 64,928 + PGA1_c00640 0.46 +0.4 64,928 + PGA1_c00640 0.46 -0.3 64,940 + PGA1_c00640 0.47 +0.4 64,940 + PGA1_c00640 0.47 -0.5 64,948 - PGA1_c00640 0.47 +1.3 64,998 + PGA1_c00640 0.50 +1.2 65,029 + PGA1_c00640 0.51 -1.7 65,029 + PGA1_c00640 0.51 +0.7 65,037 - PGA1_c00640 0.52 +1.5 65,037 - PGA1_c00640 0.52 +0.4 65,039 + PGA1_c00640 0.52 +0.7 65,071 + PGA1_c00640 0.53 -1.5 65,125 + PGA1_c00640 0.56 -0.6 65,127 + PGA1_c00640 0.56 -0.6 65,159 + PGA1_c00640 0.58 +0.8 65,159 + PGA1_c00640 0.58 +0.5 65,167 - PGA1_c00640 0.58 -0.1 65,174 - PGA1_c00640 0.58 +2.0 65,176 + PGA1_c00640 0.59 +0.1 65,250 + PGA1_c00640 0.62 +1.4 65,258 - PGA1_c00640 0.63 -1.0 65,335 + PGA1_c00640 0.67 -1.3 65,335 + PGA1_c00640 0.67 -0.4 65,367 + PGA1_c00640 0.68 +0.1 65,454 + PGA1_c00640 0.72 +0.5 65,462 - PGA1_c00640 0.73 -2.5 65,462 - PGA1_c00640 0.73 -1.0 65,462 - PGA1_c00640 0.73 -1.8 65,507 + PGA1_c00640 0.75 +0.2 65,507 + PGA1_c00640 0.75 -1.7 65,508 + PGA1_c00640 0.75 -1.7 65,515 + PGA1_c00640 0.76 -0.3 65,515 - PGA1_c00640 0.76 -0.6 65,515 - PGA1_c00640 0.76 -0.6 65,515 - PGA1_c00640 0.76 +1.4 65,515 - PGA1_c00640 0.76 -0.6 65,515 - PGA1_c00640 0.76 -1.4 65,515 - PGA1_c00640 0.76 -1.0 65,516 - PGA1_c00640 0.76 -0.3 65,520 + PGA1_c00640 0.76 -0.0 65,523 + PGA1_c00640 0.76 -1.7 65,533 - PGA1_c00640 0.76 +0.6 65,533 - PGA1_c00640 0.76 -0.8 65,533 - PGA1_c00640 0.76 +1.2 65,580 + PGA1_c00640 0.79 -1.6 65,615 - PGA1_c00640 0.81 -0.6 65,617 + PGA1_c00640 0.81 +0.5 65,617 + PGA1_c00640 0.81 +1.2 65,617 + PGA1_c00640 0.81 -2.2 65,617 + PGA1_c00640 0.81 +0.2 65,617 + PGA1_c00640 0.81 -1.7 65,617 + PGA1_c00640 0.81 +0.6 65,633 + PGA1_c00640 0.81 +0.9 65,641 - PGA1_c00640 0.82 -0.7 65,680 + PGA1_c00640 0.84 -1.5 65,716 - PGA1_c00640 0.86 -0.3 65,763 + PGA1_c00640 0.88 -0.0 65,778 - PGA1_c00640 0.89 -1.6 65,799 + PGA1_c00640 0.90 +0.4 65,826 + +1.3 65,831 + -0.8 65,831 + +0.0 65,839 - +0.2 65,839 - -0.8 65,839 - -0.6 65,845 + +0.4 65,845 + -0.5 65,845 + -1.0 65,901 + -0.1 65,910 + -0.3 65,918 + -3.5 65,919 - -1.2 66,007 + +0.4 66,052 + +0.8 66,103 - +0.6 66,113 - -0.6 66,127 - -1.8 66,127 - +0.8 66,146 - -0.8 66,201 + PGA1_c00650 0.17 +0.6 66,202 - PGA1_c00650 0.17 -0.2 66,209 + PGA1_c00650 0.18 +0.9 66,220 - PGA1_c00650 0.20 -0.1 66,227 + PGA1_c00650 0.22 +0.9 66,235 - PGA1_c00650 0.23 +0.8 66,296 + PGA1_c00650 0.35 +0.7 66,296 + PGA1_c00650 0.35 +1.8 66,336 - PGA1_c00650 0.42 +0.3 66,338 + PGA1_c00650 0.43 +0.9 66,338 + PGA1_c00650 0.43 +0.5 66,338 + PGA1_c00650 0.43 +0.1 66,338 + PGA1_c00650 0.43 +0.6 66,338 + PGA1_c00650 0.43 -0.2 66,338 + PGA1_c00650 0.43 -1.3 66,338 + PGA1_c00650 0.43 +0.2 66,338 + PGA1_c00650 0.43 -1.0 66,338 + PGA1_c00650 0.43 -2.0 66,338 + PGA1_c00650 0.43 -2.5 66,338 + PGA1_c00650 0.43 +0.6 66,338 + PGA1_c00650 0.43 -0.2 66,338 + PGA1_c00650 0.43 +0.4 66,338 + PGA1_c00650 0.43 -0.0 66,338 + PGA1_c00650 0.43 -0.4 66,338 + PGA1_c00650 0.43 +0.2 66,346 - PGA1_c00650 0.44 -0.1 66,346 - PGA1_c00650 0.44 +0.4 66,346 - PGA1_c00650 0.44 +0.4 66,346 - PGA1_c00650 0.44 -0.4 66,346 - PGA1_c00650 0.44 -0.5 66,346 - PGA1_c00650 0.44 +1.0 66,391 - PGA1_c00650 0.53 +0.3 66,427 + PGA1_c00650 0.60 -0.2 66,442 - PGA1_c00650 0.62 -0.2 66,474 + PGA1_c00650 0.69 +1.2 66,518 - PGA1_c00650 0.77 +0.6 66,518 - PGA1_c00650 0.77 -0.9 66,523 - PGA1_c00650 0.78 -1.5 66,540 - PGA1_c00650 0.81 +1.9 66,569 + PGA1_c00650 0.87 +0.4 66,569 + PGA1_c00650 0.87 +0.0 66,574 + PGA1_c00650 0.88 -2.0 66,577 - PGA1_c00650 0.88 +0.9 66,582 - PGA1_c00650 0.89 -0.7 66,641 - -0.7 66,641 - +1.7 66,641 - +0.5 66,641 - +0.6 66,705 + -1.4 66,730 - +0.5 66,732 + +0.0 66,732 + -0.5 66,732 + -1.4 66,732 + -0.6 66,732 + -0.3 66,732 + +1.4 66,732 + +1.6 66,740 - -2.5 66,740 - +0.1 66,740 - -0.2 66,740 - -0.4 66,740 - +1.0 66,740 - -0.5 66,740 - -0.8 66,740 - +0.1 66,740 - -1.3 66,740 - -1.1 66,745 - +0.8 66,771 - -0.6 66,850 - PGA1_c00660 0.12 +0.7 66,871 - PGA1_c00660 0.14 -2.5 66,955 + PGA1_c00660 0.24 -0.4 66,955 + PGA1_c00660 0.24 -1.5 66,955 + PGA1_c00660 0.24 -1.0 66,955 + PGA1_c00660 0.24 +0.5 66,963 - PGA1_c00660 0.25 -0.6 66,963 - PGA1_c00660 0.25 -1.0 66,963 - PGA1_c00660 0.25 -1.0 66,963 - PGA1_c00660 0.25 -1.8 66,991 + PGA1_c00660 0.28 -0.3 66,998 + PGA1_c00660 0.29 -0.6 66,999 + PGA1_c00660 0.29 +0.4
Or see this region's nucleotide sequence