Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06260 and PGA1_c06270 are separated by 1 nucleotides PGA1_c06270 and PGA1_c06280 overlap by 1 nucleotides PGA1_c06280 and PGA1_c06290 are separated by 24 nucleotides PGA1_c06290 and PGA1_c06300 are separated by 118 nucleotides PGA1_c06300 and PGA1_c06310 are separated by 4 nucleotides
PGA1_c06260: PGA1_c06260 - protoheme IX farnesyltransferase CtaB, at 642,029 to 642,970
_c06260
PGA1_c06270: PGA1_c06270 - hypothetical protein, at 642,972 to 643,151
_c06270
PGA1_c06280: PGA1_c06280 - cytochrome c oxidase assembly protein CtaG, at 643,151 to 643,738
_c06280
PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578
_c06290
PGA1_c06300: PGA1_c06300 - Uncharacterized conserved protein, at 644,697 to 645,371
_c06300
PGA1_c06310: PGA1_c06310 - threonine synthase ThrC, at 645,376 to 646,764
_c06310
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 643.133 kb on + strand, within PGA1_c06270 at 643.140 kb on + strand at 643.352 kb on - strand, within PGA1_c06280 at 643.648 kb on + strand, within PGA1_c06280 at 643.656 kb on - strand, within PGA1_c06280 at 643.994 kb on + strand, within PGA1_c06290 at 644.002 kb on - strand, within PGA1_c06290 at 644.593 kb on - strand at 644.598 kb on + strand at 644.605 kb on + strand at 644.606 kb on - strand at 644.655 kb on + strand at 644.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 643,133 + PGA1_c06270 0.89 -0.9 643,140 + -0.2 643,352 - PGA1_c06280 0.34 +0.3 643,648 + PGA1_c06280 0.85 -0.8 643,656 - PGA1_c06280 0.86 -1.9 643,994 + PGA1_c06290 0.28 -0.1 644,002 - PGA1_c06290 0.29 +0.9 644,593 - -0.2 644,598 + +0.4 644,605 + -0.7 644,606 - +0.8 644,655 + -1.0 644,655 + -0.4
Or see this region's nucleotide sequence