Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06080 and PGA1_c06090 are separated by 3 nucleotides PGA1_c06090 and PGA1_c06100 are separated by 10 nucleotides PGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides
PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863
_c06080
PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847
_c06090
PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826
_c06100
PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271
_c06110
Position (kb) 623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 622.895 kb on - strand at 622.900 kb on - strand at 622.905 kb on - strand at 622.918 kb on - strand at 622.941 kb on + strand at 622.949 kb on - strand at 623.007 kb on + strand, within PGA1_c06090 at 623.033 kb on + strand, within PGA1_c06090 at 623.033 kb on + strand, within PGA1_c06090 at 623.033 kb on + strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.128 kb on - strand, within PGA1_c06090 at 623.153 kb on + strand, within PGA1_c06090 at 623.222 kb on - strand, within PGA1_c06090 at 623.244 kb on - strand, within PGA1_c06090 at 623.256 kb on + strand, within PGA1_c06090 at 623.292 kb on - strand, within PGA1_c06090 at 623.374 kb on + strand, within PGA1_c06090 at 623.381 kb on - strand, within PGA1_c06090 at 623.425 kb on + strand, within PGA1_c06090 at 623.456 kb on + strand, within PGA1_c06090 at 623.464 kb on - strand, within PGA1_c06090 at 623.466 kb on + strand, within PGA1_c06090 at 623.474 kb on - strand, within PGA1_c06090 at 623.487 kb on + strand, within PGA1_c06090 at 623.502 kb on + strand, within PGA1_c06090 at 623.567 kb on + strand, within PGA1_c06090 at 623.575 kb on - strand, within PGA1_c06090 at 623.577 kb on + strand, within PGA1_c06090 at 623.577 kb on + strand, within PGA1_c06090 at 623.640 kb on - strand, within PGA1_c06090 at 623.668 kb on + strand, within PGA1_c06090 at 623.671 kb on - strand, within PGA1_c06090 at 623.676 kb on - strand, within PGA1_c06090 at 623.724 kb on + strand, within PGA1_c06090 at 623.798 kb on + strand at 623.808 kb on - strand at 623.904 kb on - strand at 623.940 kb on + strand at 624.031 kb on + strand, within PGA1_c06100 at 624.054 kb on + strand, within PGA1_c06100 at 624.079 kb on + strand, within PGA1_c06100 at 624.099 kb on + strand, within PGA1_c06100 at 624.121 kb on + strand, within PGA1_c06100 at 624.160 kb on + strand, within PGA1_c06100 at 624.168 kb on + strand, within PGA1_c06100 at 624.285 kb on + strand, within PGA1_c06100 at 624.425 kb on + strand, within PGA1_c06100 at 624.478 kb on + strand, within PGA1_c06100 at 624.569 kb on + strand, within PGA1_c06100 at 624.617 kb on - strand, within PGA1_c06100 at 624.727 kb on - strand, within PGA1_c06100 at 624.751 kb on + strand at 624.767 kb on - strand at 624.786 kb on - strand at 624.808 kb on + strand at 624.821 kb on - strand at 624.879 kb on - strand at 625.064 kb on + strand, within PGA1_c06110 at 625.184 kb on + strand, within PGA1_c06110 at 625.283 kb on - strand, within PGA1_c06110 at 625.482 kb on - strand, within PGA1_c06110 at 625.511 kb on - strand, within PGA1_c06110 at 625.559 kb on - strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.586 kb on + strand, within PGA1_c06110 at 625.597 kb on - strand, within PGA1_c06110 at 625.783 kb on + strand, within PGA1_c06110 at 625.795 kb on + strand, within PGA1_c06110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 622,895 - +1.0 622,900 - +2.0 622,905 - +0.7 622,918 - +1.3 622,941 + +1.0 622,949 - -0.6 623,007 + PGA1_c06090 0.14 +1.0 623,033 + PGA1_c06090 0.17 -0.0 623,033 + PGA1_c06090 0.17 +1.0 623,033 + PGA1_c06090 0.17 +0.4 623,041 - PGA1_c06090 0.18 +2.2 623,041 - PGA1_c06090 0.18 -0.6 623,041 - PGA1_c06090 0.18 -0.6 623,041 - PGA1_c06090 0.18 +0.6 623,041 - PGA1_c06090 0.18 +1.4 623,128 - PGA1_c06090 0.27 +1.6 623,153 + PGA1_c06090 0.29 +2.3 623,222 - PGA1_c06090 0.36 -0.3 623,244 - PGA1_c06090 0.38 +1.0 623,256 + PGA1_c06090 0.40 -0.4 623,292 - PGA1_c06090 0.43 -0.0 623,374 + PGA1_c06090 0.52 +1.0 623,381 - PGA1_c06090 0.52 +0.2 623,425 + PGA1_c06090 0.57 +1.0 623,456 + PGA1_c06090 0.60 +1.2 623,464 - PGA1_c06090 0.61 +1.4 623,466 + PGA1_c06090 0.61 +4.0 623,474 - PGA1_c06090 0.62 +0.6 623,487 + PGA1_c06090 0.63 +1.0 623,502 + PGA1_c06090 0.65 -2.5 623,567 + PGA1_c06090 0.71 +0.6 623,575 - PGA1_c06090 0.72 +1.0 623,577 + PGA1_c06090 0.72 +2.0 623,577 + PGA1_c06090 0.72 +3.3 623,640 - PGA1_c06090 0.79 +2.6 623,668 + PGA1_c06090 0.82 +1.6 623,671 - PGA1_c06090 0.82 +1.0 623,676 - PGA1_c06090 0.82 +1.6 623,724 + PGA1_c06090 0.87 -2.0 623,798 + +0.7 623,808 - +2.0 623,904 - +0.2 623,940 + -0.6 624,031 + PGA1_c06100 0.18 -0.0 624,054 + PGA1_c06100 0.20 +0.7 624,079 + PGA1_c06100 0.23 +1.3 624,099 + PGA1_c06100 0.25 +0.7 624,121 + PGA1_c06100 0.27 +1.4 624,160 + PGA1_c06100 0.31 +2.0 624,168 + PGA1_c06100 0.32 +1.4 624,285 + PGA1_c06100 0.44 +2.0 624,425 + PGA1_c06100 0.59 +1.4 624,478 + PGA1_c06100 0.64 +3.0 624,569 + PGA1_c06100 0.73 -1.0 624,617 - PGA1_c06100 0.78 +0.7 624,727 - PGA1_c06100 0.90 -0.0 624,751 + +0.4 624,767 - -0.0 624,786 - +1.0 624,808 + +1.0 624,821 - +1.4 624,879 - +1.4 625,064 + PGA1_c06110 0.16 +1.0 625,184 + PGA1_c06110 0.25 +1.0 625,283 - PGA1_c06110 0.32 +2.0 625,482 - PGA1_c06110 0.45 -1.8 625,511 - PGA1_c06110 0.47 -0.6 625,559 - PGA1_c06110 0.51 -0.0 625,576 + PGA1_c06110 0.52 +1.6 625,576 + PGA1_c06110 0.52 +2.3 625,586 + PGA1_c06110 0.53 +1.0 625,597 - PGA1_c06110 0.53 +1.0 625,783 + PGA1_c06110 0.66 -1.0 625,795 + PGA1_c06110 0.67 +1.0
Or see this region's nucleotide sequence