Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06090

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06070 and PGA1_c06080 are separated by 40 nucleotidesPGA1_c06080 and PGA1_c06090 are separated by 3 nucleotidesPGA1_c06090 and PGA1_c06100 are separated by 10 nucleotidesPGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides PGA1_c06070: PGA1_c06070 - hypothetical protein, at 621,372 to 622,220 _c06070 PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863 _c06080 PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847 _c06090 PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826 _c06100 PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271 _c06110 Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 621.961 kb on - strand, within PGA1_c06070at 621.966 kb on - strand, within PGA1_c06070at 621.997 kb on + strand, within PGA1_c06070at 622.004 kb on + strand, within PGA1_c06070at 622.005 kb on - strand, within PGA1_c06070at 622.040 kb on + strand, within PGA1_c06070at 622.087 kb on - strand, within PGA1_c06070at 622.155 kb on - strandat 622.172 kb on + strandat 622.230 kb on + strandat 622.235 kb on + strandat 622.245 kb on + strandat 622.253 kb on - strandat 622.253 kb on - strandat 622.355 kb on - strand, within PGA1_c06080at 622.467 kb on + strand, within PGA1_c06080at 622.505 kb on + strand, within PGA1_c06080at 622.535 kb on + strand, within PGA1_c06080at 622.553 kb on - strand, within PGA1_c06080at 622.579 kb on - strand, within PGA1_c06080at 622.601 kb on - strand, within PGA1_c06080at 622.626 kb on + strand, within PGA1_c06080at 622.635 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.737 kb on - strand, within PGA1_c06080at 622.844 kb on + strandat 622.895 kb on - strandat 622.900 kb on - strandat 622.905 kb on - strandat 622.918 kb on - strandat 622.941 kb on + strandat 622.949 kb on - strandat 623.007 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.128 kb on - strand, within PGA1_c06090at 623.153 kb on + strand, within PGA1_c06090at 623.222 kb on - strand, within PGA1_c06090at 623.244 kb on - strand, within PGA1_c06090at 623.256 kb on + strand, within PGA1_c06090at 623.292 kb on - strand, within PGA1_c06090at 623.374 kb on + strand, within PGA1_c06090at 623.381 kb on - strand, within PGA1_c06090at 623.425 kb on + strand, within PGA1_c06090at 623.456 kb on + strand, within PGA1_c06090at 623.464 kb on - strand, within PGA1_c06090at 623.466 kb on + strand, within PGA1_c06090at 623.474 kb on - strand, within PGA1_c06090at 623.487 kb on + strand, within PGA1_c06090at 623.502 kb on + strand, within PGA1_c06090at 623.567 kb on + strand, within PGA1_c06090at 623.575 kb on - strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.640 kb on - strand, within PGA1_c06090at 623.668 kb on + strand, within PGA1_c06090at 623.671 kb on - strand, within PGA1_c06090at 623.676 kb on - strand, within PGA1_c06090at 623.724 kb on + strand, within PGA1_c06090at 623.798 kb on + strandat 623.808 kb on - strandat 623.904 kb on - strandat 623.940 kb on + strandat 624.031 kb on + strand, within PGA1_c06100at 624.054 kb on + strand, within PGA1_c06100at 624.079 kb on + strand, within PGA1_c06100at 624.099 kb on + strand, within PGA1_c06100at 624.121 kb on + strand, within PGA1_c06100at 624.160 kb on + strand, within PGA1_c06100at 624.168 kb on + strand, within PGA1_c06100at 624.285 kb on + strand, within PGA1_c06100at 624.425 kb on + strand, within PGA1_c06100at 624.478 kb on + strand, within PGA1_c06100at 624.569 kb on + strand, within PGA1_c06100at 624.617 kb on - strand, within PGA1_c06100at 624.727 kb on - strand, within PGA1_c06100at 624.751 kb on + strandat 624.767 kb on - strandat 624.786 kb on - strandat 624.808 kb on + strandat 624.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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621,961 - PGA1_c06070 0.69 +1.2
621,966 - PGA1_c06070 0.70 -1.8
621,997 + PGA1_c06070 0.74 +2.3
622,004 + PGA1_c06070 0.74 -1.0
622,005 - PGA1_c06070 0.75 -0.5
622,040 + PGA1_c06070 0.79 +0.8
622,087 - PGA1_c06070 0.84 -0.3
622,155 - -0.0
622,172 + +2.6
622,230 + +0.6
622,235 + +0.4
622,245 + +1.8
622,253 - +0.6
622,253 - -0.0
622,355 - PGA1_c06080 0.16 -1.0
622,467 + PGA1_c06080 0.34 +0.7
622,505 + PGA1_c06080 0.40 -0.0
622,535 + PGA1_c06080 0.45 +0.6
622,553 - PGA1_c06080 0.48 -0.6
622,579 - PGA1_c06080 0.53 -0.0
622,601 - PGA1_c06080 0.56 +0.5
622,626 + PGA1_c06080 0.61 +4.6
622,635 - PGA1_c06080 0.62 -1.2
622,721 - PGA1_c06080 0.76 +1.0
622,721 - PGA1_c06080 0.76 +0.4
622,737 - PGA1_c06080 0.79 +0.3
622,844 + +0.5
622,895 - +1.0
622,900 - +2.0
622,905 - +0.7
622,918 - +1.3
622,941 + +1.0
622,949 - -0.6
623,007 + PGA1_c06090 0.14 +1.0
623,033 + PGA1_c06090 0.17 -0.0
623,033 + PGA1_c06090 0.17 +1.0
623,033 + PGA1_c06090 0.17 +0.4
623,041 - PGA1_c06090 0.18 +2.2
623,041 - PGA1_c06090 0.18 -0.6
623,041 - PGA1_c06090 0.18 -0.6
623,041 - PGA1_c06090 0.18 +0.6
623,041 - PGA1_c06090 0.18 +1.4
623,128 - PGA1_c06090 0.27 +1.6
623,153 + PGA1_c06090 0.29 +2.3
623,222 - PGA1_c06090 0.36 -0.3
623,244 - PGA1_c06090 0.38 +1.0
623,256 + PGA1_c06090 0.40 -0.4
623,292 - PGA1_c06090 0.43 -0.0
623,374 + PGA1_c06090 0.52 +1.0
623,381 - PGA1_c06090 0.52 +0.2
623,425 + PGA1_c06090 0.57 +1.0
623,456 + PGA1_c06090 0.60 +1.2
623,464 - PGA1_c06090 0.61 +1.4
623,466 + PGA1_c06090 0.61 +4.0
623,474 - PGA1_c06090 0.62 +0.6
623,487 + PGA1_c06090 0.63 +1.0
623,502 + PGA1_c06090 0.65 -2.5
623,567 + PGA1_c06090 0.71 +0.6
623,575 - PGA1_c06090 0.72 +1.0
623,577 + PGA1_c06090 0.72 +2.0
623,577 + PGA1_c06090 0.72 +3.3
623,640 - PGA1_c06090 0.79 +2.6
623,668 + PGA1_c06090 0.82 +1.6
623,671 - PGA1_c06090 0.82 +1.0
623,676 - PGA1_c06090 0.82 +1.6
623,724 + PGA1_c06090 0.87 -2.0
623,798 + +0.7
623,808 - +2.0
623,904 - +0.2
623,940 + -0.6
624,031 + PGA1_c06100 0.18 -0.0
624,054 + PGA1_c06100 0.20 +0.7
624,079 + PGA1_c06100 0.23 +1.3
624,099 + PGA1_c06100 0.25 +0.7
624,121 + PGA1_c06100 0.27 +1.4
624,160 + PGA1_c06100 0.31 +2.0
624,168 + PGA1_c06100 0.32 +1.4
624,285 + PGA1_c06100 0.44 +2.0
624,425 + PGA1_c06100 0.59 +1.4
624,478 + PGA1_c06100 0.64 +3.0
624,569 + PGA1_c06100 0.73 -1.0
624,617 - PGA1_c06100 0.78 +0.7
624,727 - PGA1_c06100 0.90 -0.0
624,751 + +0.4
624,767 - -0.0
624,786 - +1.0
624,808 + +1.0
624,821 - +1.4

Or see this region's nucleotide sequence