Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06010 and PGA1_c06020 are separated by 99 nucleotides PGA1_c06020 and PGA1_c06030 are separated by 85 nucleotides PGA1_c06030 and PGA1_c06040 are separated by 52 nucleotides
PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522
_c06010
PGA1_c06020: PGA1_c06020 - thioesterase domain-containing protein, at 615,622 to 616,032
_c06020
PGA1_c06030: PGA1_c06030 - DNA repair nuclease, ligase-associated (TIGR04123) <small>(from data)</small>, at 616,118 to 616,792
_c06030
PGA1_c06040: PGA1_c06040 - DNA damage response helicase, ligase-associated <small>(from data)</small>, at 616,845 to 619,280
_c06040
Position (kb) 616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 615.491 kb on + strand at 615.605 kb on - strand at 615.627 kb on - strand at 615.728 kb on + strand, within PGA1_c06020 at 615.811 kb on - strand, within PGA1_c06020 at 615.850 kb on - strand, within PGA1_c06020 at 615.916 kb on + strand, within PGA1_c06020 at 616.061 kb on - strand at 616.144 kb on - strand at 616.162 kb on + strand at 616.181 kb on + strand at 616.250 kb on - strand, within PGA1_c06030 at 616.303 kb on + strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.420 kb on - strand, within PGA1_c06030 at 616.448 kb on + strand, within PGA1_c06030 at 616.485 kb on + strand, within PGA1_c06030 at 616.490 kb on - strand, within PGA1_c06030 at 616.667 kb on - strand, within PGA1_c06030 at 616.728 kb on - strand at 616.728 kb on - strand at 616.757 kb on - strand at 616.765 kb on - strand at 616.787 kb on + strand at 616.795 kb on - strand at 616.904 kb on - strand at 617.014 kb on + strand at 617.048 kb on + strand at 617.072 kb on - strand at 617.179 kb on + strand, within PGA1_c06040 at 617.179 kb on + strand, within PGA1_c06040 at 617.187 kb on - strand, within PGA1_c06040 at 617.189 kb on + strand, within PGA1_c06040 at 617.189 kb on + strand, within PGA1_c06040 at 617.312 kb on + strand, within PGA1_c06040 at 617.341 kb on + strand, within PGA1_c06040 at 617.341 kb on + strand, within PGA1_c06040 at 617.349 kb on - strand, within PGA1_c06040 at 617.376 kb on + strand, within PGA1_c06040 at 617.417 kb on + strand, within PGA1_c06040 at 617.425 kb on - strand, within PGA1_c06040 at 617.431 kb on - strand, within PGA1_c06040 at 617.435 kb on - strand, within PGA1_c06040 at 617.520 kb on + strand, within PGA1_c06040 at 617.527 kb on + strand, within PGA1_c06040 at 617.549 kb on + strand, within PGA1_c06040 at 617.557 kb on - strand, within PGA1_c06040 at 617.563 kb on + strand, within PGA1_c06040 at 617.630 kb on + strand, within PGA1_c06040 at 617.638 kb on - strand, within PGA1_c06040 at 617.638 kb on - strand, within PGA1_c06040 at 617.699 kb on + strand, within PGA1_c06040 at 617.705 kb on - strand, within PGA1_c06040 at 617.730 kb on + strand, within PGA1_c06040 at 617.732 kb on - strand, within PGA1_c06040 at 617.738 kb on - strand, within PGA1_c06040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 615,491 + -0.8 615,605 - +1.8 615,627 - +1.8 615,728 + PGA1_c06020 0.26 -0.0 615,811 - PGA1_c06020 0.46 +1.7 615,850 - PGA1_c06020 0.55 +0.9 615,916 + PGA1_c06020 0.72 +3.6 616,061 - -0.3 616,144 - +0.1 616,162 + +2.0 616,181 + +1.6 616,250 - PGA1_c06030 0.20 +1.6 616,303 + PGA1_c06030 0.27 +1.0 616,310 - PGA1_c06030 0.28 +0.2 616,310 - PGA1_c06030 0.28 +1.6 616,310 - PGA1_c06030 0.28 +0.4 616,420 - PGA1_c06030 0.45 +1.6 616,448 + PGA1_c06030 0.49 +0.2 616,485 + PGA1_c06030 0.54 +0.1 616,490 - PGA1_c06030 0.55 +1.2 616,667 - PGA1_c06030 0.81 -1.4 616,728 - -0.2 616,728 - -1.9 616,757 - +0.2 616,765 - -0.3 616,787 + +0.2 616,795 - -0.6 616,904 - +0.3 617,014 + +0.8 617,048 + +0.2 617,072 - +0.8 617,179 + PGA1_c06040 0.14 -1.6 617,179 + PGA1_c06040 0.14 -0.6 617,187 - PGA1_c06040 0.14 +0.6 617,189 + PGA1_c06040 0.14 +1.0 617,189 + PGA1_c06040 0.14 -0.3 617,312 + PGA1_c06040 0.19 +0.1 617,341 + PGA1_c06040 0.20 +3.6 617,341 + PGA1_c06040 0.20 +0.2 617,349 - PGA1_c06040 0.21 +1.6 617,376 + PGA1_c06040 0.22 +1.0 617,417 + PGA1_c06040 0.23 +0.8 617,425 - PGA1_c06040 0.24 +0.4 617,431 - PGA1_c06040 0.24 -1.6 617,435 - PGA1_c06040 0.24 -1.3 617,520 + PGA1_c06040 0.28 +3.4 617,527 + PGA1_c06040 0.28 +1.6 617,549 + PGA1_c06040 0.29 -0.0 617,557 - PGA1_c06040 0.29 -0.0 617,563 + PGA1_c06040 0.29 -0.0 617,630 + PGA1_c06040 0.32 +1.0 617,638 - PGA1_c06040 0.33 -1.0 617,638 - PGA1_c06040 0.33 -1.0 617,699 + PGA1_c06040 0.35 +3.0 617,705 - PGA1_c06040 0.35 +1.1 617,730 + PGA1_c06040 0.36 -2.9 617,732 - PGA1_c06040 0.36 +0.6 617,738 - PGA1_c06040 0.37 +0.6
Or see this region's nucleotide sequence