Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05660 and PGA1_c05670 overlap by 4 nucleotides PGA1_c05670 and PGA1_c05680 overlap by 4 nucleotides PGA1_c05680 and PGA1_c05690 are separated by 106 nucleotides PGA1_c05690 and PGA1_c05700 are separated by 135 nucleotides
PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732
_c05660
PGA1_c05670: PGA1_c05670 - acetyltransferase domain-containing protein, at 579,729 to 580,283
_c05670
PGA1_c05680: PGA1_c05680 - Predicted membrane protein, at 580,280 to 581,335
_c05680
PGA1_c05690: PGA1_c05690 - Truncated hemoglobins, at 581,442 to 581,852
_c05690
PGA1_c05700: PGA1_c05700 - KAP family P-loop domain., at 581,988 to 583,832
_c05700
Position (kb) 580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 579.323 kb on - strand, within PGA1_c05660 at 579.419 kb on + strand, within PGA1_c05660 at 579.490 kb on - strand, within PGA1_c05660 at 579.495 kb on - strand, within PGA1_c05660 at 579.511 kb on + strand, within PGA1_c05660 at 579.511 kb on + strand, within PGA1_c05660 at 579.511 kb on + strand, within PGA1_c05660 at 579.519 kb on - strand, within PGA1_c05660 at 579.553 kb on + strand, within PGA1_c05660 at 579.629 kb on - strand at 579.649 kb on + strand at 579.649 kb on + strand at 579.657 kb on - strand at 579.657 kb on - strand at 579.679 kb on + strand at 579.679 kb on + strand at 579.687 kb on - strand at 579.688 kb on + strand at 579.733 kb on - strand at 579.735 kb on + strand at 579.744 kb on - strand at 579.777 kb on - strand at 579.842 kb on + strand, within PGA1_c05670 at 579.852 kb on + strand, within PGA1_c05670 at 579.898 kb on + strand, within PGA1_c05670 at 579.901 kb on - strand, within PGA1_c05670 at 580.046 kb on + strand, within PGA1_c05670 at 580.054 kb on - strand, within PGA1_c05670 at 580.054 kb on - strand, within PGA1_c05670 at 580.100 kb on - strand, within PGA1_c05670 at 580.112 kb on + strand, within PGA1_c05670 at 580.112 kb on + strand, within PGA1_c05670 at 580.137 kb on + strand, within PGA1_c05670 at 580.145 kb on - strand, within PGA1_c05670 at 580.239 kb on - strand at 580.239 kb on - strand at 580.284 kb on + strand at 580.370 kb on + strand at 580.429 kb on + strand, within PGA1_c05680 at 580.494 kb on - strand, within PGA1_c05680 at 580.574 kb on + strand, within PGA1_c05680 at 580.800 kb on + strand, within PGA1_c05680 at 580.815 kb on + strand, within PGA1_c05680 at 580.823 kb on - strand, within PGA1_c05680 at 580.976 kb on + strand, within PGA1_c05680 at 581.053 kb on + strand, within PGA1_c05680 at 581.066 kb on - strand, within PGA1_c05680 at 581.089 kb on - strand, within PGA1_c05680 at 581.131 kb on + strand, within PGA1_c05680 at 581.149 kb on - strand, within PGA1_c05680 at 581.151 kb on + strand, within PGA1_c05680 at 581.156 kb on + strand, within PGA1_c05680 at 581.169 kb on - strand, within PGA1_c05680 at 581.189 kb on + strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.267 kb on - strand at 581.267 kb on - strand at 581.276 kb on + strand at 581.276 kb on + strand at 581.276 kb on + strand at 581.283 kb on + strand at 581.284 kb on - strand at 581.284 kb on - strand at 581.366 kb on + strand at 581.440 kb on + strand at 581.448 kb on - strand at 581.502 kb on + strand, within PGA1_c05690 at 581.502 kb on - strand, within PGA1_c05690 at 581.530 kb on + strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.641 kb on - strand, within PGA1_c05690 at 581.719 kb on + strand, within PGA1_c05690 at 581.719 kb on + strand, within PGA1_c05690 at 581.749 kb on + strand, within PGA1_c05690 at 581.749 kb on + strand, within PGA1_c05690 at 581.770 kb on - strand, within PGA1_c05690 at 581.782 kb on - strand, within PGA1_c05690 at 581.810 kb on + strand, within PGA1_c05690 at 581.818 kb on - strand at 581.823 kb on - strand at 581.823 kb on - strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.848 kb on - strand at 581.849 kb on - strand at 581.849 kb on - strand at 581.864 kb on - strand at 581.883 kb on - strand at 581.888 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.931 kb on - strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.959 kb on + strand at 581.962 kb on - strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.968 kb on + strand at 581.972 kb on + strand at 581.974 kb on - strand at 581.974 kb on - strand at 581.981 kb on - strand at 582.006 kb on - strand at 582.006 kb on - strand at 582.008 kb on + strand at 582.016 kb on - strand at 582.077 kb on + strand at 582.082 kb on + strand at 582.082 kb on + strand at 582.085 kb on - strand at 582.085 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.095 kb on + strand at 582.100 kb on - strand at 582.159 kb on + strand at 582.167 kb on - strand at 582.171 kb on - strand at 582.171 kb on - strand at 582.173 kb on + strand, within PGA1_c05700 at 582.192 kb on + strand, within PGA1_c05700 at 582.217 kb on + strand, within PGA1_c05700 at 582.247 kb on - strand, within PGA1_c05700 at 582.273 kb on + strand, within PGA1_c05700 at 582.288 kb on + strand, within PGA1_c05700 at 582.332 kb on - strand, within PGA1_c05700 at 582.332 kb on - strand, within PGA1_c05700 at 582.335 kb on + strand, within PGA1_c05700 at 582.335 kb on + strand, within PGA1_c05700
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 579,323 - PGA1_c05660 0.71 +0.8 579,419 + PGA1_c05660 0.78 -0.9 579,490 - PGA1_c05660 0.83 +0.2 579,495 - PGA1_c05660 0.83 +1.1 579,511 + PGA1_c05660 0.84 +1.7 579,511 + PGA1_c05660 0.84 +0.2 579,511 + PGA1_c05660 0.84 +4.5 579,519 - PGA1_c05660 0.85 -1.8 579,553 + PGA1_c05660 0.87 +1.0 579,629 - -0.0 579,649 + -1.6 579,649 + +1.0 579,657 - +1.1 579,657 - -0.0 579,679 + -1.0 579,679 + +2.0 579,687 - -1.6 579,688 + +2.0 579,733 - +1.0 579,735 + -0.6 579,744 - +0.4 579,777 - -2.0 579,842 + PGA1_c05670 0.20 -0.6 579,852 + PGA1_c05670 0.22 -0.6 579,898 + PGA1_c05670 0.30 -0.0 579,901 - PGA1_c05670 0.31 +1.4 580,046 + PGA1_c05670 0.57 -0.0 580,054 - PGA1_c05670 0.59 -0.4 580,054 - PGA1_c05670 0.59 +1.2 580,100 - PGA1_c05670 0.67 +0.3 580,112 + PGA1_c05670 0.69 -0.6 580,112 + PGA1_c05670 0.69 +3.3 580,137 + PGA1_c05670 0.74 -0.6 580,145 - PGA1_c05670 0.75 -1.4 580,239 - -0.0 580,239 - -0.6 580,284 + -0.0 580,370 + +0.1 580,429 + PGA1_c05680 0.14 +1.0 580,494 - PGA1_c05680 0.20 +2.0 580,574 + PGA1_c05680 0.28 +1.7 580,800 + PGA1_c05680 0.49 -0.6 580,815 + PGA1_c05680 0.51 -1.0 580,823 - PGA1_c05680 0.51 -0.4 580,976 + PGA1_c05680 0.66 +0.2 581,053 + PGA1_c05680 0.73 -0.6 581,066 - PGA1_c05680 0.74 +1.5 581,089 - PGA1_c05680 0.77 +0.4 581,131 + PGA1_c05680 0.81 +2.1 581,149 - PGA1_c05680 0.82 +2.2 581,151 + PGA1_c05680 0.82 +1.7 581,156 + PGA1_c05680 0.83 -0.5 581,169 - PGA1_c05680 0.84 +1.5 581,189 + PGA1_c05680 0.86 +0.4 581,197 - PGA1_c05680 0.87 -0.6 581,197 - PGA1_c05680 0.87 +1.5 581,197 - PGA1_c05680 0.87 +1.4 581,197 - PGA1_c05680 0.87 +1.5 581,197 - PGA1_c05680 0.87 +0.3 581,267 - +1.0 581,267 - -2.9 581,276 + -1.8 581,276 + +1.4 581,276 + +0.5 581,283 + +3.0 581,284 - +2.0 581,284 - -0.0 581,366 + +0.8 581,440 + -0.9 581,448 - +0.6 581,502 + PGA1_c05690 0.15 -0.7 581,502 - PGA1_c05690 0.15 -0.0 581,530 + PGA1_c05690 0.21 +1.5 581,538 - PGA1_c05690 0.23 +2.0 581,538 - PGA1_c05690 0.23 +0.4 581,538 - PGA1_c05690 0.23 +1.0 581,641 - PGA1_c05690 0.48 -0.6 581,719 + PGA1_c05690 0.67 +0.7 581,719 + PGA1_c05690 0.67 +1.7 581,749 + PGA1_c05690 0.75 -1.8 581,749 + PGA1_c05690 0.75 +2.1 581,770 - PGA1_c05690 0.80 +0.4 581,782 - PGA1_c05690 0.83 +1.3 581,810 + PGA1_c05690 0.90 +0.2 581,818 - +1.7 581,823 - +2.2 581,823 - +1.0 581,841 + -1.2 581,841 + +1.0 581,841 + +1.0 581,841 + +0.0 581,848 - +1.0 581,849 - +1.0 581,849 - -1.4 581,864 - -1.6 581,883 - +2.8 581,888 - -0.0 581,923 - +1.0 581,923 - -0.5 581,923 - +1.0 581,923 - -1.6 581,931 - -0.3 581,954 + +1.6 581,954 + -1.0 581,954 + +0.6 581,954 + -0.2 581,959 + +2.0 581,962 - +1.1 581,966 + +2.1 581,966 + -0.0 581,966 + -0.8 581,966 + -0.5 581,966 + +0.4 581,968 + +2.0 581,972 + -0.5 581,974 - -0.0 581,974 - +1.0 581,981 - +1.4 582,006 - -0.6 582,006 - +1.0 582,008 + +1.2 582,016 - -0.6 582,077 + +1.0 582,082 + +1.0 582,082 + +1.2 582,085 - -0.0 582,085 - -2.0 582,090 - +2.7 582,090 - +0.2 582,090 - -2.8 582,090 - +1.0 582,090 - -0.0 582,090 - -1.5 582,090 - -0.0 582,090 - +1.8 582,090 - +1.0 582,095 + +1.6 582,100 - +0.7 582,159 + -1.4 582,167 - +3.4 582,171 - +2.0 582,171 - -1.0 582,173 + PGA1_c05700 0.10 -0.3 582,192 + PGA1_c05700 0.11 +1.0 582,217 + PGA1_c05700 0.12 -0.8 582,247 - PGA1_c05700 0.14 +0.7 582,273 + PGA1_c05700 0.15 +2.0 582,288 + PGA1_c05700 0.16 +1.0 582,332 - PGA1_c05700 0.19 +0.4 582,332 - PGA1_c05700 0.19 -0.8 582,335 + PGA1_c05700 0.19 -0.0 582,335 + PGA1_c05700 0.19 +1.3
Or see this region's nucleotide sequence