Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05150

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05140 and PGA1_c05150 are separated by 167 nucleotidesPGA1_c05150 and PGA1_c05160 are separated by 144 nucleotides PGA1_c05140: PGA1_c05140 - D-amino acid dehydrogenase small subunit, at 506,942 to 508,192 _c05140 PGA1_c05150: PGA1_c05150 - chemoreceptor McpA, at 508,360 to 510,642 _c05150 PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938 _c05160 Position (kb) 508 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.465 kb on - strand, within PGA1_c05140at 507.518 kb on + strand, within PGA1_c05140at 507.525 kb on + strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.533 kb on - strand, within PGA1_c05140at 507.602 kb on + strand, within PGA1_c05140at 507.620 kb on - strand, within PGA1_c05140at 507.647 kb on + strand, within PGA1_c05140at 507.656 kb on + strand, within PGA1_c05140at 507.727 kb on + strand, within PGA1_c05140at 507.734 kb on + strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.869 kb on - strand, within PGA1_c05140at 507.871 kb on + strand, within PGA1_c05140at 507.905 kb on - strand, within PGA1_c05140at 507.955 kb on + strand, within PGA1_c05140at 507.955 kb on + strand, within PGA1_c05140at 507.963 kb on - strand, within PGA1_c05140at 507.965 kb on + strand, within PGA1_c05140at 507.975 kb on + strand, within PGA1_c05140at 508.007 kb on - strand, within PGA1_c05140at 508.064 kb on + strand, within PGA1_c05140at 508.100 kb on - strandat 508.123 kb on + strandat 508.151 kb on - strandat 508.204 kb on + strandat 508.205 kb on + strandat 508.212 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.241 kb on - strandat 508.306 kb on + strandat 508.344 kb on + strandat 508.352 kb on - strandat 508.352 kb on - strandat 508.354 kb on + strandat 508.407 kb on + strandat 508.421 kb on - strandat 508.421 kb on - strandat 508.421 kb on - strandat 508.422 kb on + strandat 508.422 kb on + strandat 508.469 kb on - strandat 508.505 kb on + strandat 508.505 kb on + strandat 508.520 kb on - strandat 508.589 kb on + strand, within PGA1_c05150at 508.742 kb on - strand, within PGA1_c05150at 508.752 kb on - strand, within PGA1_c05150at 508.800 kb on + strand, within PGA1_c05150at 508.808 kb on - strand, within PGA1_c05150at 508.808 kb on - strand, within PGA1_c05150at 508.825 kb on + strand, within PGA1_c05150at 508.843 kb on - strand, within PGA1_c05150at 508.843 kb on - strand, within PGA1_c05150at 508.848 kb on + strand, within PGA1_c05150at 508.856 kb on - strand, within PGA1_c05150at 508.858 kb on + strand, within PGA1_c05150at 508.866 kb on - strand, within PGA1_c05150at 508.924 kb on - strand, within PGA1_c05150at 508.924 kb on - strand, within PGA1_c05150at 508.935 kb on - strand, within PGA1_c05150at 508.937 kb on - strand, within PGA1_c05150at 508.937 kb on - strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.988 kb on + strand, within PGA1_c05150at 508.991 kb on + strand, within PGA1_c05150at 509.026 kb on - strand, within PGA1_c05150at 509.071 kb on + strand, within PGA1_c05150at 509.076 kb on + strand, within PGA1_c05150at 509.079 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.174 kb on + strand, within PGA1_c05150at 509.182 kb on - strand, within PGA1_c05150at 509.184 kb on + strand, within PGA1_c05150at 509.232 kb on + strand, within PGA1_c05150at 509.254 kb on - strand, within PGA1_c05150at 509.265 kb on + strand, within PGA1_c05150at 509.306 kb on - strand, within PGA1_c05150at 509.459 kb on - strand, within PGA1_c05150at 509.469 kb on + strand, within PGA1_c05150at 509.487 kb on - strand, within PGA1_c05150at 509.488 kb on - strand, within PGA1_c05150at 509.488 kb on - strand, within PGA1_c05150at 509.588 kb on + strand, within PGA1_c05150at 509.716 kb on + strand, within PGA1_c05150at 509.773 kb on + strand, within PGA1_c05150at 509.825 kb on - strand, within PGA1_c05150at 509.847 kb on + strand, within PGA1_c05150at 509.855 kb on - strand, within PGA1_c05150at 509.875 kb on - strand, within PGA1_c05150at 509.875 kb on - strand, within PGA1_c05150at 509.988 kb on + strand, within PGA1_c05150at 510.008 kb on + strand, within PGA1_c05150at 510.008 kb on + strand, within PGA1_c05150at 510.020 kb on - strand, within PGA1_c05150at 510.044 kb on + strand, within PGA1_c05150at 510.052 kb on - strand, within PGA1_c05150at 510.157 kb on + strand, within PGA1_c05150at 510.163 kb on - strand, within PGA1_c05150at 510.217 kb on - strand, within PGA1_c05150at 510.217 kb on - strand, within PGA1_c05150at 510.258 kb on + strand, within PGA1_c05150at 510.354 kb on + strand, within PGA1_c05150at 510.355 kb on + strand, within PGA1_c05150at 510.373 kb on - strand, within PGA1_c05150at 510.445 kb on - strandat 510.463 kb on - strandat 510.544 kb on - strandat 510.602 kb on + strandat 510.633 kb on - strandat 510.643 kb on + strandat 510.651 kb on - strandat 510.686 kb on + strandat 510.690 kb on - strandat 510.849 kb on - strandat 510.866 kb on + strandat 510.957 kb on - strand, within PGA1_c05160at 510.967 kb on - strand, within PGA1_c05160at 510.992 kb on - strand, within PGA1_c05160at 511.030 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.381 kb on - strand, within PGA1_c05160at 511.416 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.510 kb on - strand, within PGA1_c05160at 511.567 kb on - strand, within PGA1_c05160at 511.603 kb on - strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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507,457 + PGA1_c05140 0.41 -0.0
507,457 + PGA1_c05140 0.41 -1.5
507,457 + PGA1_c05140 0.41 -1.6
507,465 - PGA1_c05140 0.42 -0.8
507,518 + PGA1_c05140 0.46 -1.0
507,525 + PGA1_c05140 0.47 +0.2
507,528 - PGA1_c05140 0.47 +0.5
507,528 - PGA1_c05140 0.47 -0.6
507,533 - PGA1_c05140 0.47 -0.5
507,602 + PGA1_c05140 0.53 -0.2
507,620 - PGA1_c05140 0.54 -0.8
507,647 + PGA1_c05140 0.56 -1.4
507,656 + PGA1_c05140 0.57 +0.5
507,727 + PGA1_c05140 0.63 +0.6
507,734 + PGA1_c05140 0.63 -0.4
507,806 - PGA1_c05140 0.69 +0.6
507,806 - PGA1_c05140 0.69 +0.2
507,806 - PGA1_c05140 0.69 -0.6
507,815 + PGA1_c05140 0.70 -0.3
507,815 + PGA1_c05140 0.70 -0.5
507,869 - PGA1_c05140 0.74 -1.6
507,871 + PGA1_c05140 0.74 -0.3
507,905 - PGA1_c05140 0.77 -1.3
507,955 + PGA1_c05140 0.81 -0.5
507,955 + PGA1_c05140 0.81 -1.4
507,963 - PGA1_c05140 0.82 +0.0
507,965 + PGA1_c05140 0.82 -0.5
507,975 + PGA1_c05140 0.83 -0.4
508,007 - PGA1_c05140 0.85 +1.4
508,064 + PGA1_c05140 0.90 -0.8
508,100 - -0.8
508,123 + -1.6
508,151 - -0.8
508,204 + +1.3
508,205 + -0.2
508,212 + -0.8
508,233 + -0.2
508,233 + -0.4
508,233 + +0.7
508,233 + +0.7
508,241 - -0.8
508,306 + -1.7
508,344 + +0.6
508,352 - -0.3
508,352 - +0.5
508,354 + -1.0
508,407 + -0.6
508,421 - -0.0
508,421 - +0.2
508,421 - +0.2
508,422 + -0.1
508,422 + +0.4
508,469 - +1.4
508,505 + -0.1
508,505 + -1.6
508,520 - +0.1
508,589 + PGA1_c05150 0.10 -0.3
508,742 - PGA1_c05150 0.17 -0.1
508,752 - PGA1_c05150 0.17 -1.7
508,800 + PGA1_c05150 0.19 -3.4
508,808 - PGA1_c05150 0.20 -0.8
508,808 - PGA1_c05150 0.20 -0.2
508,825 + PGA1_c05150 0.20 -1.6
508,843 - PGA1_c05150 0.21 -1.1
508,843 - PGA1_c05150 0.21 -0.7
508,848 + PGA1_c05150 0.21 -2.0
508,856 - PGA1_c05150 0.22 +0.2
508,858 + PGA1_c05150 0.22 -1.5
508,866 - PGA1_c05150 0.22 +0.8
508,924 - PGA1_c05150 0.25 +0.1
508,924 - PGA1_c05150 0.25 +1.6
508,935 - PGA1_c05150 0.25 +3.0
508,937 - PGA1_c05150 0.25 -0.0
508,937 - PGA1_c05150 0.25 -0.5
508,962 + PGA1_c05150 0.26 -1.4
508,962 + PGA1_c05150 0.26 +1.0
508,962 + PGA1_c05150 0.26 +0.6
508,962 + PGA1_c05150 0.26 +0.3
508,962 + PGA1_c05150 0.26 -0.2
508,962 + PGA1_c05150 0.26 -1.0
508,988 + PGA1_c05150 0.28 -0.0
508,991 + PGA1_c05150 0.28 +0.5
509,026 - PGA1_c05150 0.29 -2.6
509,071 + PGA1_c05150 0.31 -0.0
509,076 + PGA1_c05150 0.31 -0.0
509,079 - PGA1_c05150 0.31 -1.4
509,084 - PGA1_c05150 0.32 -0.6
509,084 - PGA1_c05150 0.32 +0.8
509,084 - PGA1_c05150 0.32 +0.5
509,174 + PGA1_c05150 0.36 +0.7
509,182 - PGA1_c05150 0.36 -0.8
509,184 + PGA1_c05150 0.36 +1.8
509,232 + PGA1_c05150 0.38 -1.8
509,254 - PGA1_c05150 0.39 -0.6
509,265 + PGA1_c05150 0.40 +0.0
509,306 - PGA1_c05150 0.41 -0.7
509,459 - PGA1_c05150 0.48 -0.2
509,469 + PGA1_c05150 0.49 +1.3
509,487 - PGA1_c05150 0.49 +0.3
509,488 - PGA1_c05150 0.49 +0.1
509,488 - PGA1_c05150 0.49 -0.3
509,588 + PGA1_c05150 0.54 -0.4
509,716 + PGA1_c05150 0.59 -0.0
509,773 + PGA1_c05150 0.62 -0.0
509,825 - PGA1_c05150 0.64 -0.2
509,847 + PGA1_c05150 0.65 +1.5
509,855 - PGA1_c05150 0.65 -1.7
509,875 - PGA1_c05150 0.66 -1.0
509,875 - PGA1_c05150 0.66 +1.5
509,988 + PGA1_c05150 0.71 +0.7
510,008 + PGA1_c05150 0.72 -0.2
510,008 + PGA1_c05150 0.72 -1.6
510,020 - PGA1_c05150 0.73 -0.9
510,044 + PGA1_c05150 0.74 -0.7
510,052 - PGA1_c05150 0.74 -0.1
510,157 + PGA1_c05150 0.79 +0.8
510,163 - PGA1_c05150 0.79 -0.2
510,217 - PGA1_c05150 0.81 -1.5
510,217 - PGA1_c05150 0.81 +0.5
510,258 + PGA1_c05150 0.83 -0.2
510,354 + PGA1_c05150 0.87 -0.1
510,355 + PGA1_c05150 0.87 +0.1
510,373 - PGA1_c05150 0.88 -0.2
510,445 - +0.2
510,463 - -0.0
510,544 - +0.5
510,602 + +0.0
510,633 - +2.6
510,643 + -0.3
510,651 - -0.8
510,686 + -1.0
510,690 - +0.6
510,849 - -0.2
510,866 + +0.2
510,957 - PGA1_c05160 0.15 +1.2
510,967 - PGA1_c05160 0.16 -0.1
510,992 - PGA1_c05160 0.18 -1.4
511,030 - PGA1_c05160 0.21 -1.2
511,193 - PGA1_c05160 0.35 -1.8
511,193 - PGA1_c05160 0.35 +1.0
511,381 - PGA1_c05160 0.52 -0.1
511,416 - PGA1_c05160 0.55 -0.3
511,479 - PGA1_c05160 0.60 -0.4
511,479 - PGA1_c05160 0.60 -0.0
511,510 - PGA1_c05160 0.63 +1.2
511,567 - PGA1_c05160 0.68 +0.0
511,603 - PGA1_c05160 0.71 +0.2
511,638 + PGA1_c05160 0.74 -0.7
511,638 + PGA1_c05160 0.74 +1.3
511,638 + PGA1_c05160 0.74 -0.6

Or see this region's nucleotide sequence