Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05130

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05110 and PGA1_c05120 overlap by 10 nucleotidesPGA1_c05120 and PGA1_c05130 overlap by 1 nucleotidesPGA1_c05130 and PGA1_c05140 are separated by 53 nucleotides PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523 _c05110 PGA1_c05120: PGA1_c05120 - 4-hydroxyproline epimerase, at 504,514 to 505,458 _c05120 PGA1_c05130: PGA1_c05130 - aldehyde dehydrogenase, at 505,458 to 506,888 _c05130 PGA1_c05140: PGA1_c05140 - D-amino acid dehydrogenase small subunit, at 506,942 to 508,192 _c05140 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 504.471 kb on - strandat 504.474 kb on + strandat 504.474 kb on + strandat 504.482 kb on + strandat 504.490 kb on - strandat 504.490 kb on - strandat 504.554 kb on + strandat 504.562 kb on - strandat 504.644 kb on + strand, within PGA1_c05120at 504.652 kb on - strand, within PGA1_c05120at 504.652 kb on - strand, within PGA1_c05120at 504.717 kb on - strand, within PGA1_c05120at 504.787 kb on - strand, within PGA1_c05120at 504.805 kb on + strand, within PGA1_c05120at 504.813 kb on - strand, within PGA1_c05120at 504.815 kb on + strand, within PGA1_c05120at 504.857 kb on + strand, within PGA1_c05120at 504.983 kb on - strand, within PGA1_c05120at 505.004 kb on + strand, within PGA1_c05120at 505.010 kb on - strand, within PGA1_c05120at 505.012 kb on - strand, within PGA1_c05120at 505.022 kb on + strand, within PGA1_c05120at 505.029 kb on - strand, within PGA1_c05120at 505.032 kb on + strand, within PGA1_c05120at 505.073 kb on + strand, within PGA1_c05120at 505.075 kb on - strand, within PGA1_c05120at 505.078 kb on + strand, within PGA1_c05120at 505.085 kb on - strand, within PGA1_c05120at 505.085 kb on - strand, within PGA1_c05120at 505.101 kb on - strand, within PGA1_c05120at 505.118 kb on + strand, within PGA1_c05120at 505.142 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.150 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.198 kb on + strand, within PGA1_c05120at 505.198 kb on + strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.313 kb on + strand, within PGA1_c05120at 505.331 kb on + strand, within PGA1_c05120at 505.420 kb on - strandat 505.442 kb on + strandat 505.447 kb on + strandat 505.450 kb on - strandat 505.497 kb on - strandat 505.497 kb on - strandat 505.498 kb on - strandat 505.550 kb on - strandat 505.611 kb on + strand, within PGA1_c05130at 505.613 kb on + strand, within PGA1_c05130at 505.619 kb on - strand, within PGA1_c05130at 505.619 kb on - strand, within PGA1_c05130at 505.645 kb on + strand, within PGA1_c05130at 505.655 kb on + strand, within PGA1_c05130at 505.698 kb on - strand, within PGA1_c05130at 505.698 kb on - strand, within PGA1_c05130at 505.724 kb on + strand, within PGA1_c05130at 505.724 kb on + strand, within PGA1_c05130at 505.732 kb on - strand, within PGA1_c05130at 505.732 kb on - strand, within PGA1_c05130at 505.792 kb on + strand, within PGA1_c05130at 505.813 kb on + strand, within PGA1_c05130at 505.830 kb on + strand, within PGA1_c05130at 505.838 kb on - strand, within PGA1_c05130at 505.881 kb on + strand, within PGA1_c05130at 505.938 kb on + strand, within PGA1_c05130at 505.938 kb on + strand, within PGA1_c05130at 505.943 kb on + strand, within PGA1_c05130at 505.943 kb on + strand, within PGA1_c05130at 505.946 kb on - strand, within PGA1_c05130at 505.946 kb on - strand, within PGA1_c05130at 506.074 kb on + strand, within PGA1_c05130at 506.077 kb on - strand, within PGA1_c05130at 506.088 kb on - strand, within PGA1_c05130at 506.106 kb on - strand, within PGA1_c05130at 506.187 kb on + strand, within PGA1_c05130at 506.189 kb on - strand, within PGA1_c05130at 506.235 kb on + strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.286 kb on + strand, within PGA1_c05130at 506.286 kb on + strand, within PGA1_c05130at 506.291 kb on + strand, within PGA1_c05130at 506.294 kb on - strand, within PGA1_c05130at 506.294 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.300 kb on - strand, within PGA1_c05130at 506.374 kb on - strand, within PGA1_c05130at 506.391 kb on + strand, within PGA1_c05130at 506.416 kb on + strand, within PGA1_c05130at 506.497 kb on - strand, within PGA1_c05130at 506.508 kb on + strand, within PGA1_c05130at 506.516 kb on - strand, within PGA1_c05130at 506.518 kb on + strand, within PGA1_c05130at 506.526 kb on - strand, within PGA1_c05130at 506.526 kb on - strand, within PGA1_c05130at 506.535 kb on - strand, within PGA1_c05130at 506.684 kb on + strand, within PGA1_c05130at 506.797 kb on + strandat 506.829 kb on - strandat 506.871 kb on + strandat 506.872 kb on + strandat 506.962 kb on - strandat 506.962 kb on - strandat 507.093 kb on - strand, within PGA1_c05140at 507.193 kb on + strand, within PGA1_c05140at 507.193 kb on + strand, within PGA1_c05140at 507.193 kb on + strand, within PGA1_c05140at 507.201 kb on - strand, within PGA1_c05140at 507.263 kb on - strand, within PGA1_c05140at 507.281 kb on - strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.465 kb on - strand, within PGA1_c05140at 507.518 kb on + strand, within PGA1_c05140at 507.525 kb on + strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.533 kb on - strand, within PGA1_c05140at 507.602 kb on + strand, within PGA1_c05140at 507.620 kb on - strand, within PGA1_c05140at 507.647 kb on + strand, within PGA1_c05140at 507.656 kb on + strand, within PGA1_c05140at 507.727 kb on + strand, within PGA1_c05140at 507.734 kb on + strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.869 kb on - strand, within PGA1_c05140at 507.871 kb on + strand, within PGA1_c05140

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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504,471 - +0.6
504,474 + -0.3
504,474 + +2.0
504,482 + -0.4
504,490 - +1.5
504,490 - -0.8
504,554 + -1.0
504,562 - +0.6
504,644 + PGA1_c05120 0.14 +0.5
504,652 - PGA1_c05120 0.15 +0.2
504,652 - PGA1_c05120 0.15 +0.7
504,717 - PGA1_c05120 0.21 +0.7
504,787 - PGA1_c05120 0.29 +1.2
504,805 + PGA1_c05120 0.31 +0.5
504,813 - PGA1_c05120 0.32 +0.6
504,815 + PGA1_c05120 0.32 -2.0
504,857 + PGA1_c05120 0.36 +1.4
504,983 - PGA1_c05120 0.50 +1.5
505,004 + PGA1_c05120 0.52 -0.8
505,010 - PGA1_c05120 0.52 -0.8
505,012 - PGA1_c05120 0.53 +0.1
505,022 + PGA1_c05120 0.54 -0.0
505,029 - PGA1_c05120 0.54 -0.7
505,032 + PGA1_c05120 0.55 +0.3
505,073 + PGA1_c05120 0.59 -0.4
505,075 - PGA1_c05120 0.59 +0.5
505,078 + PGA1_c05120 0.60 -0.0
505,085 - PGA1_c05120 0.60 -1.4
505,085 - PGA1_c05120 0.60 -0.6
505,101 - PGA1_c05120 0.62 -0.7
505,118 + PGA1_c05120 0.64 -0.0
505,142 + PGA1_c05120 0.66 +0.7
505,147 + PGA1_c05120 0.67 -1.3
505,147 + PGA1_c05120 0.67 -0.6
505,147 + PGA1_c05120 0.67 -0.1
505,147 + PGA1_c05120 0.67 +0.3
505,150 - PGA1_c05120 0.67 +0.5
505,155 - PGA1_c05120 0.68 +1.3
505,155 - PGA1_c05120 0.68 -0.8
505,155 - PGA1_c05120 0.68 -2.2
505,155 - PGA1_c05120 0.68 +0.3
505,155 - PGA1_c05120 0.68 -0.3
505,155 - PGA1_c05120 0.68 -0.6
505,155 - PGA1_c05120 0.68 -2.1
505,198 + PGA1_c05120 0.72 +1.0
505,198 + PGA1_c05120 0.72 +0.3
505,206 - PGA1_c05120 0.73 +0.0
505,206 - PGA1_c05120 0.73 +0.8
505,206 - PGA1_c05120 0.73 +0.5
505,206 - PGA1_c05120 0.73 -1.8
505,206 - PGA1_c05120 0.73 -2.6
505,286 + PGA1_c05120 0.82 -1.0
505,286 + PGA1_c05120 0.82 +0.7
505,286 + PGA1_c05120 0.82 -0.1
505,313 + PGA1_c05120 0.85 -0.6
505,331 + PGA1_c05120 0.86 -0.9
505,420 - +0.9
505,442 + +0.5
505,447 + +0.8
505,450 - +1.0
505,497 - +0.1
505,497 - -0.9
505,498 - +0.4
505,550 - -1.1
505,611 + PGA1_c05130 0.11 +0.5
505,613 + PGA1_c05130 0.11 +2.2
505,619 - PGA1_c05130 0.11 -0.4
505,619 - PGA1_c05130 0.11 +0.6
505,645 + PGA1_c05130 0.13 -0.5
505,655 + PGA1_c05130 0.14 +0.0
505,698 - PGA1_c05130 0.17 -0.2
505,698 - PGA1_c05130 0.17 -0.6
505,724 + PGA1_c05130 0.19 -0.4
505,724 + PGA1_c05130 0.19 -0.1
505,732 - PGA1_c05130 0.19 -1.4
505,732 - PGA1_c05130 0.19 -1.1
505,792 + PGA1_c05130 0.23 -0.9
505,813 + PGA1_c05130 0.25 -0.4
505,830 + PGA1_c05130 0.26 -0.6
505,838 - PGA1_c05130 0.27 -2.0
505,881 + PGA1_c05130 0.30 -0.6
505,938 + PGA1_c05130 0.34 -1.5
505,938 + PGA1_c05130 0.34 +2.4
505,943 + PGA1_c05130 0.34 +0.1
505,943 + PGA1_c05130 0.34 -0.2
505,946 - PGA1_c05130 0.34 +0.3
505,946 - PGA1_c05130 0.34 -0.8
506,074 + PGA1_c05130 0.43 -1.0
506,077 - PGA1_c05130 0.43 -0.0
506,088 - PGA1_c05130 0.44 -0.7
506,106 - PGA1_c05130 0.45 +0.4
506,187 + PGA1_c05130 0.51 +0.1
506,189 - PGA1_c05130 0.51 -0.2
506,235 + PGA1_c05130 0.54 +0.4
506,243 - PGA1_c05130 0.55 +0.2
506,243 - PGA1_c05130 0.55 +0.2
506,243 - PGA1_c05130 0.55 -1.6
506,286 + PGA1_c05130 0.58 -1.9
506,286 + PGA1_c05130 0.58 -1.4
506,291 + PGA1_c05130 0.58 -0.6
506,294 - PGA1_c05130 0.58 -2.6
506,294 - PGA1_c05130 0.58 -0.4
506,299 - PGA1_c05130 0.59 +0.3
506,299 - PGA1_c05130 0.59 -1.0
506,299 - PGA1_c05130 0.59 +0.8
506,299 - PGA1_c05130 0.59 -0.4
506,299 - PGA1_c05130 0.59 -0.5
506,300 - PGA1_c05130 0.59 +0.1
506,374 - PGA1_c05130 0.64 -0.0
506,391 + PGA1_c05130 0.65 -0.7
506,416 + PGA1_c05130 0.67 -1.0
506,497 - PGA1_c05130 0.73 +0.2
506,508 + PGA1_c05130 0.73 +2.4
506,516 - PGA1_c05130 0.74 -0.8
506,518 + PGA1_c05130 0.74 -0.0
506,526 - PGA1_c05130 0.75 -0.7
506,526 - PGA1_c05130 0.75 +0.1
506,535 - PGA1_c05130 0.75 +0.9
506,684 + PGA1_c05130 0.86 +0.3
506,797 + -0.4
506,829 - -0.4
506,871 + -0.4
506,872 + -0.4
506,962 - +0.4
506,962 - -0.6
507,093 - PGA1_c05140 0.12 -0.4
507,193 + PGA1_c05140 0.20 +0.5
507,193 + PGA1_c05140 0.20 -0.5
507,193 + PGA1_c05140 0.20 +0.4
507,201 - PGA1_c05140 0.21 +1.4
507,263 - PGA1_c05140 0.26 -2.7
507,281 - PGA1_c05140 0.27 -1.2
507,457 + PGA1_c05140 0.41 -0.0
507,457 + PGA1_c05140 0.41 -1.5
507,457 + PGA1_c05140 0.41 -1.6
507,465 - PGA1_c05140 0.42 -0.8
507,518 + PGA1_c05140 0.46 -1.0
507,525 + PGA1_c05140 0.47 +0.2
507,528 - PGA1_c05140 0.47 +0.5
507,528 - PGA1_c05140 0.47 -0.6
507,533 - PGA1_c05140 0.47 -0.5
507,602 + PGA1_c05140 0.53 -0.2
507,620 - PGA1_c05140 0.54 -0.8
507,647 + PGA1_c05140 0.56 -1.4
507,656 + PGA1_c05140 0.57 +0.5
507,727 + PGA1_c05140 0.63 +0.6
507,734 + PGA1_c05140 0.63 -0.4
507,806 - PGA1_c05140 0.69 +0.6
507,806 - PGA1_c05140 0.69 +0.2
507,806 - PGA1_c05140 0.69 -0.6
507,815 + PGA1_c05140 0.70 -0.3
507,815 + PGA1_c05140 0.70 -0.5
507,869 - PGA1_c05140 0.74 -1.6
507,871 + PGA1_c05140 0.74 -0.3

Or see this region's nucleotide sequence