Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04590

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04580 and PGA1_c04590 are separated by 37 nucleotidesPGA1_c04590 and PGA1_c04600 overlap by 4 nucleotidesPGA1_c04600 and PGA1_c04610 are separated by 181 nucleotides PGA1_c04580: PGA1_c04580 - endonuclease/exonuclease/phosphatase domain-containing protein, at 451,339 to 452,541 _c04580 PGA1_c04590: PGA1_c04590 - putative threonine dehydratase, at 452,579 to 453,553 _c04590 PGA1_c04600: PGA1_c04600 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 453,550 to 454,239 _c04600 PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107 _c04610 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.647 kb on + strand, within PGA1_c04580at 451.650 kb on - strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on + strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.655 kb on - strand, within PGA1_c04580at 451.663 kb on - strand, within PGA1_c04580at 451.663 kb on - strand, within PGA1_c04580at 451.663 kb on - strand, within PGA1_c04580at 451.663 kb on - strand, within PGA1_c04580at 451.663 kb on - strand, within PGA1_c04580at 451.667 kb on + strand, within PGA1_c04580at 451.787 kb on + strand, within PGA1_c04580at 451.792 kb on + strand, within PGA1_c04580at 451.800 kb on - strand, within PGA1_c04580at 451.800 kb on - strand, within PGA1_c04580at 451.800 kb on - strand, within PGA1_c04580at 451.805 kb on - strand, within PGA1_c04580at 451.805 kb on - strand, within PGA1_c04580at 451.807 kb on + strand, within PGA1_c04580at 451.827 kb on + strand, within PGA1_c04580at 451.834 kb on + strand, within PGA1_c04580at 451.834 kb on + strand, within PGA1_c04580at 451.835 kb on - strand, within PGA1_c04580at 451.841 kb on + strand, within PGA1_c04580at 451.842 kb on - strand, within PGA1_c04580at 451.849 kb on + strand, within PGA1_c04580at 451.857 kb on - strand, within PGA1_c04580at 451.857 kb on - strand, within PGA1_c04580at 451.864 kb on - strand, within PGA1_c04580at 451.940 kb on + strand, within PGA1_c04580at 451.950 kb on + strand, within PGA1_c04580at 452.006 kb on - strand, within PGA1_c04580at 452.040 kb on - strand, within PGA1_c04580at 452.046 kb on + strand, within PGA1_c04580at 452.054 kb on - strand, within PGA1_c04580at 452.054 kb on - strand, within PGA1_c04580at 452.094 kb on - strand, within PGA1_c04580at 452.103 kb on - strand, within PGA1_c04580at 452.103 kb on - strand, within PGA1_c04580at 452.103 kb on - strand, within PGA1_c04580at 452.113 kb on + strand, within PGA1_c04580at 452.113 kb on + strand, within PGA1_c04580at 452.121 kb on - strand, within PGA1_c04580at 452.121 kb on - strand, within PGA1_c04580at 452.195 kb on - strand, within PGA1_c04580at 452.207 kb on - strand, within PGA1_c04580at 452.231 kb on - strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.234 kb on + strand, within PGA1_c04580at 452.242 kb on - strand, within PGA1_c04580at 452.242 kb on - strand, within PGA1_c04580at 452.242 kb on - strand, within PGA1_c04580at 452.242 kb on - strand, within PGA1_c04580at 452.242 kb on - strand, within PGA1_c04580at 452.251 kb on - strand, within PGA1_c04580at 452.309 kb on - strand, within PGA1_c04580at 452.421 kb on - strandat 452.457 kb on - strandat 452.457 kb on - strandat 452.537 kb on + strandat 452.565 kb on - strandat 452.570 kb on + strandat 452.588 kb on - strandat 452.616 kb on + strandat 452.619 kb on - strandat 452.624 kb on - strandat 452.668 kb on - strandat 452.671 kb on - strandat 452.673 kb on + strandat 452.691 kb on - strand, within PGA1_c04590at 452.693 kb on + strand, within PGA1_c04590at 452.724 kb on + strand, within PGA1_c04590at 452.741 kb on + strand, within PGA1_c04590at 452.749 kb on - strand, within PGA1_c04590at 452.754 kb on - strand, within PGA1_c04590at 452.754 kb on - strand, within PGA1_c04590at 452.850 kb on + strand, within PGA1_c04590at 452.975 kb on - strand, within PGA1_c04590at 453.020 kb on + strand, within PGA1_c04590at 453.076 kb on + strand, within PGA1_c04590at 453.079 kb on - strand, within PGA1_c04590at 453.081 kb on + strand, within PGA1_c04590at 453.103 kb on - strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.175 kb on - strand, within PGA1_c04590at 453.213 kb on - strand, within PGA1_c04590at 453.303 kb on + strand, within PGA1_c04590at 453.303 kb on + strand, within PGA1_c04590at 453.303 kb on + strand, within PGA1_c04590at 453.309 kb on + strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.313 kb on + strand, within PGA1_c04590at 453.347 kb on + strand, within PGA1_c04590at 453.393 kb on + strand, within PGA1_c04590at 453.432 kb on + strand, within PGA1_c04590at 453.432 kb on + strand, within PGA1_c04590at 453.432 kb on + strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.518 kb on + strandat 453.518 kb on + strandat 453.518 kb on + strandat 453.576 kb on + strandat 453.585 kb on + strandat 453.590 kb on + strandat 453.591 kb on + strandat 453.625 kb on + strand, within PGA1_c04600at 453.634 kb on + strand, within PGA1_c04600at 453.699 kb on - strand, within PGA1_c04600at 453.699 kb on - strand, within PGA1_c04600at 453.813 kb on - strand, within PGA1_c04600at 453.823 kb on + strand, within PGA1_c04600at 453.828 kb on + strand, within PGA1_c04600at 453.942 kb on + strand, within PGA1_c04600at 453.980 kb on + strand, within PGA1_c04600at 454.081 kb on + strand, within PGA1_c04600at 454.156 kb on - strand, within PGA1_c04600at 454.165 kb on + strand, within PGA1_c04600at 454.170 kb on + strand, within PGA1_c04600at 454.208 kb on - strandat 454.208 kb on - strandat 454.220 kb on + strandat 454.291 kb on + strandat 454.358 kb on - strandat 454.362 kb on + strandat 454.370 kb on - strandat 454.371 kb on + strandat 454.371 kb on + strandat 454.381 kb on + strandat 454.381 kb on + strandat 454.389 kb on - strandat 454.413 kb on + strandat 454.421 kb on - strandat 454.421 kb on - strandat 454.451 kb on - strandat 454.451 kb on - strandat 454.456 kb on - strandat 454.457 kb on + strandat 454.463 kb on + strandat 454.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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451,647 + PGA1_c04580 0.26 +1.2
451,647 + PGA1_c04580 0.26 -1.4
451,647 + PGA1_c04580 0.26 -0.4
451,647 + PGA1_c04580 0.26 +0.1
451,647 + PGA1_c04580 0.26 -0.8
451,647 + PGA1_c04580 0.26 +0.1
451,647 + PGA1_c04580 0.26 -0.3
451,647 + PGA1_c04580 0.26 -0.1
451,647 + PGA1_c04580 0.26 +0.4
451,647 + PGA1_c04580 0.26 -2.5
451,650 - PGA1_c04580 0.26 -1.0
451,655 + PGA1_c04580 0.26 -1.6
451,655 + PGA1_c04580 0.26 -0.5
451,655 + PGA1_c04580 0.26 +0.5
451,655 + PGA1_c04580 0.26 -0.9
451,655 + PGA1_c04580 0.26 -0.6
451,655 + PGA1_c04580 0.26 -0.3
451,655 + PGA1_c04580 0.26 +1.5
451,655 + PGA1_c04580 0.26 +0.3
451,655 + PGA1_c04580 0.26 -0.4
451,655 + PGA1_c04580 0.26 +0.0
451,655 - PGA1_c04580 0.26 -0.5
451,655 - PGA1_c04580 0.26 +2.3
451,655 - PGA1_c04580 0.26 -1.0
451,655 - PGA1_c04580 0.26 +0.1
451,655 - PGA1_c04580 0.26 -1.0
451,655 - PGA1_c04580 0.26 -0.0
451,655 - PGA1_c04580 0.26 -0.7
451,655 - PGA1_c04580 0.26 -0.2
451,655 - PGA1_c04580 0.26 -0.2
451,655 - PGA1_c04580 0.26 +0.7
451,655 - PGA1_c04580 0.26 -0.9
451,655 - PGA1_c04580 0.26 -2.5
451,655 - PGA1_c04580 0.26 -0.6
451,663 - PGA1_c04580 0.27 +0.5
451,663 - PGA1_c04580 0.27 +1.4
451,663 - PGA1_c04580 0.27 +0.6
451,663 - PGA1_c04580 0.27 +1.7
451,663 - PGA1_c04580 0.27 -0.8
451,667 + PGA1_c04580 0.27 +0.3
451,787 + PGA1_c04580 0.37 -1.6
451,792 + PGA1_c04580 0.38 -2.0
451,800 - PGA1_c04580 0.38 -0.7
451,800 - PGA1_c04580 0.38 -0.9
451,800 - PGA1_c04580 0.38 -2.2
451,805 - PGA1_c04580 0.39 +1.4
451,805 - PGA1_c04580 0.39 -1.1
451,807 + PGA1_c04580 0.39 +0.7
451,827 + PGA1_c04580 0.41 -2.7
451,834 + PGA1_c04580 0.41 -0.4
451,834 + PGA1_c04580 0.41 +1.9
451,835 - PGA1_c04580 0.41 -0.4
451,841 + PGA1_c04580 0.42 -0.8
451,842 - PGA1_c04580 0.42 +0.4
451,849 + PGA1_c04580 0.42 -0.5
451,857 - PGA1_c04580 0.43 -1.7
451,857 - PGA1_c04580 0.43 +1.8
451,864 - PGA1_c04580 0.44 -0.3
451,940 + PGA1_c04580 0.50 -0.6
451,950 + PGA1_c04580 0.51 -0.0
452,006 - PGA1_c04580 0.55 -0.4
452,040 - PGA1_c04580 0.58 +0.6
452,046 + PGA1_c04580 0.59 +1.0
452,054 - PGA1_c04580 0.59 -2.4
452,054 - PGA1_c04580 0.59 -0.5
452,094 - PGA1_c04580 0.63 +0.1
452,103 - PGA1_c04580 0.64 -0.4
452,103 - PGA1_c04580 0.64 +1.4
452,103 - PGA1_c04580 0.64 -1.8
452,113 + PGA1_c04580 0.64 +0.1
452,113 + PGA1_c04580 0.64 +0.2
452,121 - PGA1_c04580 0.65 +0.6
452,121 - PGA1_c04580 0.65 +0.8
452,195 - PGA1_c04580 0.71 -1.8
452,207 - PGA1_c04580 0.72 -0.3
452,231 - PGA1_c04580 0.74 +0.6
452,234 + PGA1_c04580 0.74 -0.8
452,234 + PGA1_c04580 0.74 +0.3
452,234 + PGA1_c04580 0.74 -0.9
452,234 + PGA1_c04580 0.74 +1.8
452,234 + PGA1_c04580 0.74 +0.3
452,234 + PGA1_c04580 0.74 -0.8
452,234 + PGA1_c04580 0.74 -1.5
452,234 + PGA1_c04580 0.74 +0.5
452,242 - PGA1_c04580 0.75 -1.6
452,242 - PGA1_c04580 0.75 -0.0
452,242 - PGA1_c04580 0.75 -0.1
452,242 - PGA1_c04580 0.75 +0.5
452,242 - PGA1_c04580 0.75 +1.1
452,251 - PGA1_c04580 0.76 +1.0
452,309 - PGA1_c04580 0.81 -0.8
452,421 - -0.0
452,457 - -2.0
452,457 - +0.4
452,537 + +0.4
452,565 - -1.0
452,570 + -0.2
452,588 - -0.2
452,616 + -0.9
452,619 - +0.2
452,624 - +1.0
452,668 - +1.2
452,671 - -2.2
452,673 + +0.2
452,691 - PGA1_c04590 0.11 -0.7
452,693 + PGA1_c04590 0.12 +0.1
452,724 + PGA1_c04590 0.15 +1.2
452,741 + PGA1_c04590 0.17 +0.5
452,749 - PGA1_c04590 0.17 -1.0
452,754 - PGA1_c04590 0.18 -3.1
452,754 - PGA1_c04590 0.18 -1.5
452,850 + PGA1_c04590 0.28 +0.3
452,975 - PGA1_c04590 0.41 +0.3
453,020 + PGA1_c04590 0.45 -0.8
453,076 + PGA1_c04590 0.51 -0.4
453,079 - PGA1_c04590 0.51 -1.9
453,081 + PGA1_c04590 0.51 -3.0
453,103 - PGA1_c04590 0.54 +0.4
453,130 + PGA1_c04590 0.57 -0.5
453,130 + PGA1_c04590 0.57 -2.1
453,130 + PGA1_c04590 0.57 -1.0
453,130 + PGA1_c04590 0.57 +0.2
453,130 + PGA1_c04590 0.57 +1.0
453,130 + PGA1_c04590 0.57 -1.4
453,130 + PGA1_c04590 0.57 -0.8
453,130 + PGA1_c04590 0.57 +0.9
453,130 + PGA1_c04590 0.57 +0.4
453,130 + PGA1_c04590 0.57 -0.8
453,130 + PGA1_c04590 0.57 -0.2
453,130 + PGA1_c04590 0.57 -1.6
453,130 + PGA1_c04590 0.57 -0.2
453,130 + PGA1_c04590 0.57 -0.2
453,130 + PGA1_c04590 0.57 +0.4
453,138 - PGA1_c04590 0.57 +0.2
453,138 - PGA1_c04590 0.57 -3.4
453,138 - PGA1_c04590 0.57 -0.4
453,138 - PGA1_c04590 0.57 -2.2
453,138 - PGA1_c04590 0.57 +0.3
453,138 - PGA1_c04590 0.57 -0.4
453,138 - PGA1_c04590 0.57 +0.4
453,138 - PGA1_c04590 0.57 +0.5
453,138 - PGA1_c04590 0.57 +1.1
453,138 - PGA1_c04590 0.57 +0.0
453,138 - PGA1_c04590 0.57 +0.7
453,138 - PGA1_c04590 0.57 +1.1
453,138 - PGA1_c04590 0.57 +0.3
453,175 - PGA1_c04590 0.61 -0.5
453,213 - PGA1_c04590 0.65 -2.6
453,303 + PGA1_c04590 0.74 -0.7
453,303 + PGA1_c04590 0.74 +0.4
453,303 + PGA1_c04590 0.74 -0.0
453,309 + PGA1_c04590 0.75 -1.1
453,311 - PGA1_c04590 0.75 -2.4
453,311 - PGA1_c04590 0.75 +1.0
453,311 - PGA1_c04590 0.75 +0.3
453,311 - PGA1_c04590 0.75 +0.7
453,313 + PGA1_c04590 0.75 -1.3
453,347 + PGA1_c04590 0.79 +0.2
453,393 + PGA1_c04590 0.83 -0.6
453,432 + PGA1_c04590 0.87 -0.7
453,432 + PGA1_c04590 0.87 +0.1
453,432 + PGA1_c04590 0.87 -1.3
453,440 - PGA1_c04590 0.88 +0.9
453,440 - PGA1_c04590 0.88 +0.8
453,440 - PGA1_c04590 0.88 +0.1
453,440 - PGA1_c04590 0.88 +0.5
453,440 - PGA1_c04590 0.88 +0.4
453,518 + -2.0
453,518 + +0.4
453,518 + -0.3
453,576 + +0.5
453,585 + +0.4
453,590 + -1.5
453,591 + +0.5
453,625 + PGA1_c04600 0.11 +0.4
453,634 + PGA1_c04600 0.12 -0.3
453,699 - PGA1_c04600 0.22 -1.5
453,699 - PGA1_c04600 0.22 +0.5
453,813 - PGA1_c04600 0.38 -0.6
453,823 + PGA1_c04600 0.40 -2.0
453,828 + PGA1_c04600 0.40 -0.2
453,942 + PGA1_c04600 0.57 -0.3
453,980 + PGA1_c04600 0.62 -0.6
454,081 + PGA1_c04600 0.77 +1.0
454,156 - PGA1_c04600 0.88 +1.0
454,165 + PGA1_c04600 0.89 +0.5
454,170 + PGA1_c04600 0.90 -0.4
454,208 - +0.0
454,208 - +0.1
454,220 + -0.0
454,291 + +1.0
454,358 - -0.3
454,362 + -0.9
454,370 - -1.0
454,371 + +1.8
454,371 + +1.0
454,381 + +0.6
454,381 + -0.8
454,389 - +0.5
454,413 + -0.7
454,421 - -1.5
454,421 - +1.0
454,451 - -0.1
454,451 - -2.8
454,456 - +0.0
454,457 + +1.8
454,463 + +0.1
454,484 - +0.1

Or see this region's nucleotide sequence