Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04530

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04520 and PGA1_c04530 are separated by 70 nucleotidesPGA1_c04530 and PGA1_c04540 are separated by 140 nucleotides PGA1_c04520: PGA1_c04520 - putative ABC transporter cyclic nucleotide-binding protein, at 442,406 to 445,363 _c04520 PGA1_c04530: PGA1_c04530 - ureidoglycolate lyase, at 445,434 to 446,282 _c04530 PGA1_c04540: PGA1_c04540 - putative d-galactonate dehydratase, at 446,423 to 447,655 _c04540 Position (kb) 445 446 447Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 444.436 kb on - strand, within PGA1_c04520at 444.442 kb on + strand, within PGA1_c04520at 444.450 kb on - strand, within PGA1_c04520at 444.559 kb on + strand, within PGA1_c04520at 444.559 kb on + strand, within PGA1_c04520at 444.606 kb on - strand, within PGA1_c04520at 444.668 kb on - strand, within PGA1_c04520at 444.756 kb on + strand, within PGA1_c04520at 444.878 kb on - strand, within PGA1_c04520at 444.878 kb on - strand, within PGA1_c04520at 444.886 kb on - strand, within PGA1_c04520at 444.908 kb on - strand, within PGA1_c04520at 444.983 kb on + strand, within PGA1_c04520at 444.985 kb on + strand, within PGA1_c04520at 444.991 kb on - strand, within PGA1_c04520at 444.991 kb on - strand, within PGA1_c04520at 444.995 kb on + strand, within PGA1_c04520at 445.026 kb on + strand, within PGA1_c04520at 445.169 kb on - strandat 445.174 kb on + strandat 445.182 kb on - strandat 445.274 kb on + strandat 445.283 kb on - strandat 445.287 kb on + strandat 445.320 kb on + strandat 445.328 kb on - strandat 445.328 kb on - strandat 445.338 kb on - strandat 445.378 kb on + strandat 445.378 kb on + strandat 445.378 kb on + strandat 445.378 kb on + strandat 445.380 kb on + strandat 445.386 kb on - strandat 445.386 kb on - strandat 445.386 kb on - strandat 445.407 kb on - strandat 445.412 kb on + strandat 445.537 kb on + strand, within PGA1_c04530at 445.542 kb on + strand, within PGA1_c04530at 445.545 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.618 kb on + strand, within PGA1_c04530at 445.662 kb on + strand, within PGA1_c04530at 445.665 kb on - strand, within PGA1_c04530at 445.670 kb on - strand, within PGA1_c04530at 445.804 kb on - strand, within PGA1_c04530at 445.809 kb on + strand, within PGA1_c04530at 445.888 kb on - strand, within PGA1_c04530at 445.890 kb on + strand, within PGA1_c04530at 445.890 kb on + strand, within PGA1_c04530at 445.940 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.955 kb on - strand, within PGA1_c04530at 445.963 kb on + strand, within PGA1_c04530at 446.072 kb on - strand, within PGA1_c04530at 446.077 kb on + strand, within PGA1_c04530at 446.128 kb on + strand, within PGA1_c04530at 446.140 kb on - strand, within PGA1_c04530at 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.221 kb on + strandat 446.303 kb on + strandat 446.311 kb on - strandat 446.332 kb on + strandat 446.341 kb on + strandat 446.367 kb on + strandat 446.411 kb on - strandat 446.424 kb on - strandat 446.434 kb on - strandat 446.514 kb on - strandat 446.514 kb on - strandat 446.550 kb on + strand, within PGA1_c04540at 446.563 kb on + strand, within PGA1_c04540at 446.563 kb on + strand, within PGA1_c04540at 446.571 kb on - strand, within PGA1_c04540at 446.571 kb on - strand, within PGA1_c04540at 446.581 kb on - strand, within PGA1_c04540at 446.604 kb on + strand, within PGA1_c04540at 446.613 kb on + strand, within PGA1_c04540at 446.657 kb on - strand, within PGA1_c04540at 446.672 kb on + strand, within PGA1_c04540at 446.744 kb on + strand, within PGA1_c04540at 446.794 kb on - strand, within PGA1_c04540at 446.958 kb on + strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.043 kb on + strand, within PGA1_c04540at 447.061 kb on - strand, within PGA1_c04540at 447.169 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.222 kb on + strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.235 kb on + strand, within PGA1_c04540at 447.269 kb on + strand, within PGA1_c04540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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444,436 - PGA1_c04520 0.69 -1.4
444,442 + PGA1_c04520 0.69 +0.9
444,450 - PGA1_c04520 0.69 -0.3
444,559 + PGA1_c04520 0.73 +0.8
444,559 + PGA1_c04520 0.73 -1.4
444,606 - PGA1_c04520 0.74 -2.0
444,668 - PGA1_c04520 0.76 -2.5
444,756 + PGA1_c04520 0.79 -0.7
444,878 - PGA1_c04520 0.84 -1.1
444,878 - PGA1_c04520 0.84 +1.4
444,886 - PGA1_c04520 0.84 -1.3
444,908 - PGA1_c04520 0.85 -0.4
444,983 + PGA1_c04520 0.87 -1.1
444,985 + PGA1_c04520 0.87 -2.2
444,991 - PGA1_c04520 0.87 +1.1
444,991 - PGA1_c04520 0.87 -1.6
444,995 + PGA1_c04520 0.88 -0.9
445,026 + PGA1_c04520 0.89 -0.0
445,169 - +0.3
445,174 + -0.7
445,182 - -0.8
445,274 + -1.1
445,283 - -1.4
445,287 + -1.0
445,320 + -2.4
445,328 - -1.6
445,328 - -1.0
445,338 - +0.8
445,378 + +0.6
445,378 + -2.2
445,378 + +1.0
445,378 + +0.1
445,380 + +0.9
445,386 - -0.4
445,386 - -0.0
445,386 - -0.4
445,407 - -0.5
445,412 + -0.5
445,537 + PGA1_c04530 0.12 +1.1
445,542 + PGA1_c04530 0.13 +1.4
445,545 - PGA1_c04530 0.13 +0.2
445,550 - PGA1_c04530 0.14 +0.3
445,550 - PGA1_c04530 0.14 +0.1
445,550 - PGA1_c04530 0.14 -0.0
445,618 + PGA1_c04530 0.22 +0.3
445,662 + PGA1_c04530 0.27 -0.9
445,665 - PGA1_c04530 0.27 -0.0
445,670 - PGA1_c04530 0.28 +0.2
445,804 - PGA1_c04530 0.44 -0.7
445,809 + PGA1_c04530 0.44 -0.9
445,888 - PGA1_c04530 0.53 -0.3
445,890 + PGA1_c04530 0.54 +1.0
445,890 + PGA1_c04530 0.54 +0.8
445,940 + PGA1_c04530 0.60 +1.2
445,947 + PGA1_c04530 0.60 +0.7
445,947 + PGA1_c04530 0.60 -0.7
445,947 + PGA1_c04530 0.60 +0.1
445,947 + PGA1_c04530 0.60 +2.2
445,955 - PGA1_c04530 0.61 -0.3
445,963 + PGA1_c04530 0.62 +0.7
446,072 - PGA1_c04530 0.75 +1.0
446,077 + PGA1_c04530 0.76 +0.9
446,128 + PGA1_c04530 0.82 +3.0
446,140 - PGA1_c04530 0.83 -0.5
446,203 + +0.5
446,203 + -0.2
446,203 + -0.8
446,203 + +0.3
446,203 + +1.2
446,203 + +1.6
446,203 + +0.4
446,211 - +0.6
446,211 - +0.0
446,211 - -0.3
446,211 - +0.3
446,221 + -1.4
446,303 + -0.7
446,311 - +2.6
446,332 + -0.3
446,341 + +0.6
446,367 + +1.1
446,411 - +0.4
446,424 - +1.0
446,434 - -0.9
446,514 - +0.4
446,514 - +1.4
446,550 + PGA1_c04540 0.10 +0.3
446,563 + PGA1_c04540 0.11 -3.0
446,563 + PGA1_c04540 0.11 +0.6
446,571 - PGA1_c04540 0.12 +0.4
446,571 - PGA1_c04540 0.12 -1.0
446,581 - PGA1_c04540 0.13 +1.2
446,604 + PGA1_c04540 0.15 +0.1
446,613 + PGA1_c04540 0.15 +0.6
446,657 - PGA1_c04540 0.19 -0.2
446,672 + PGA1_c04540 0.20 -0.0
446,744 + PGA1_c04540 0.26 +0.8
446,794 - PGA1_c04540 0.30 -1.7
446,958 + PGA1_c04540 0.43 -2.9
446,961 - PGA1_c04540 0.44 -0.0
446,961 - PGA1_c04540 0.44 -0.4
447,038 + PGA1_c04540 0.50 +0.3
447,038 + PGA1_c04540 0.50 -1.6
447,043 + PGA1_c04540 0.50 +0.6
447,061 - PGA1_c04540 0.52 -0.4
447,169 + PGA1_c04540 0.61 -1.8
447,171 + PGA1_c04540 0.61 -0.9
447,171 + PGA1_c04540 0.61 +0.8
447,222 + PGA1_c04540 0.65 +1.0
447,222 - PGA1_c04540 0.65 +1.8
447,222 - PGA1_c04540 0.65 -2.7
447,235 + PGA1_c04540 0.66 -0.2
447,269 + PGA1_c04540 0.69 +0.5

Or see this region's nucleotide sequence