Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04410

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04400 and PGA1_c04410 are separated by 4 nucleotidesPGA1_c04410 and PGA1_c04420 are separated by 37 nucleotides PGA1_c04400: PGA1_c04400 - mechanosensitive ion channel-like protein, at 425,622 to 427,991 _c04400 PGA1_c04410: PGA1_c04410 - Predicted acyl-CoA transferases/carnitine dehydratase, at 427,996 to 429,372 _c04410 PGA1_c04420: PGA1_c04420 - putative glutathione transport system permease protein GsiD, at 429,410 to 430,564 _c04420 Position (kb) 427 428 429 430Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 426.996 kb on + strand, within PGA1_c04400at 427.028 kb on - strand, within PGA1_c04400at 427.052 kb on + strand, within PGA1_c04400at 427.062 kb on + strand, within PGA1_c04400at 427.079 kb on - strand, within PGA1_c04400at 427.099 kb on - strand, within PGA1_c04400at 427.132 kb on - strand, within PGA1_c04400at 427.190 kb on + strand, within PGA1_c04400at 427.208 kb on - strand, within PGA1_c04400at 427.208 kb on - strand, within PGA1_c04400at 427.222 kb on - strand, within PGA1_c04400at 427.248 kb on + strand, within PGA1_c04400at 427.278 kb on - strand, within PGA1_c04400at 427.306 kb on + strand, within PGA1_c04400at 427.452 kb on + strand, within PGA1_c04400at 427.459 kb on - strand, within PGA1_c04400at 427.486 kb on + strand, within PGA1_c04400at 427.494 kb on - strand, within PGA1_c04400at 427.520 kb on - strand, within PGA1_c04400at 427.696 kb on - strand, within PGA1_c04400at 427.703 kb on + strand, within PGA1_c04400at 427.827 kb on + strandat 427.840 kb on + strandat 427.857 kb on - strandat 427.877 kb on + strandat 427.877 kb on + strandat 427.941 kb on + strandat 427.950 kb on + strandat 427.958 kb on - strandat 427.992 kb on + strandat 427.992 kb on + strandat 428.000 kb on - strandat 428.008 kb on + strandat 428.168 kb on + strand, within PGA1_c04410at 428.208 kb on + strand, within PGA1_c04410at 428.219 kb on + strand, within PGA1_c04410at 428.224 kb on + strand, within PGA1_c04410at 428.237 kb on - strand, within PGA1_c04410at 428.262 kb on + strand, within PGA1_c04410at 428.267 kb on + strand, within PGA1_c04410at 428.279 kb on + strand, within PGA1_c04410at 428.279 kb on + strand, within PGA1_c04410at 428.287 kb on - strand, within PGA1_c04410at 428.289 kb on - strand, within PGA1_c04410at 428.366 kb on + strand, within PGA1_c04410at 428.374 kb on - strand, within PGA1_c04410at 428.387 kb on + strand, within PGA1_c04410at 428.395 kb on - strand, within PGA1_c04410at 428.427 kb on + strand, within PGA1_c04410at 428.430 kb on - strand, within PGA1_c04410at 428.445 kb on - strand, within PGA1_c04410at 428.472 kb on + strand, within PGA1_c04410at 428.516 kb on - strand, within PGA1_c04410at 428.523 kb on + strand, within PGA1_c04410at 428.570 kb on - strand, within PGA1_c04410at 428.611 kb on - strand, within PGA1_c04410at 428.611 kb on - strand, within PGA1_c04410at 428.613 kb on + strand, within PGA1_c04410at 428.613 kb on + strand, within PGA1_c04410at 428.620 kb on + strand, within PGA1_c04410at 428.620 kb on + strand, within PGA1_c04410at 428.622 kb on + strand, within PGA1_c04410at 428.628 kb on - strand, within PGA1_c04410at 428.628 kb on - strand, within PGA1_c04410at 428.630 kb on - strand, within PGA1_c04410at 428.637 kb on + strand, within PGA1_c04410at 428.637 kb on + strand, within PGA1_c04410at 428.637 kb on + strand, within PGA1_c04410at 428.638 kb on - strand, within PGA1_c04410at 428.645 kb on - strand, within PGA1_c04410at 428.682 kb on + strand, within PGA1_c04410at 428.750 kb on - strand, within PGA1_c04410at 428.776 kb on + strand, within PGA1_c04410at 428.798 kb on - strand, within PGA1_c04410at 428.855 kb on + strand, within PGA1_c04410at 428.891 kb on + strand, within PGA1_c04410at 428.891 kb on + strand, within PGA1_c04410at 428.899 kb on - strand, within PGA1_c04410at 428.899 kb on - strand, within PGA1_c04410at 428.929 kb on + strand, within PGA1_c04410at 428.932 kb on + strand, within PGA1_c04410at 429.000 kb on - strand, within PGA1_c04410at 429.021 kb on + strand, within PGA1_c04410at 429.026 kb on + strand, within PGA1_c04410at 429.094 kb on + strand, within PGA1_c04410at 429.112 kb on - strand, within PGA1_c04410at 429.128 kb on + strand, within PGA1_c04410at 429.151 kb on + strand, within PGA1_c04410at 429.159 kb on - strand, within PGA1_c04410at 429.159 kb on - strand, within PGA1_c04410at 429.193 kb on + strand, within PGA1_c04410at 429.193 kb on + strand, within PGA1_c04410at 429.193 kb on + strand, within PGA1_c04410at 429.198 kb on + strand, within PGA1_c04410at 429.198 kb on + strand, within PGA1_c04410at 429.198 kb on + strand, within PGA1_c04410at 429.201 kb on - strand, within PGA1_c04410at 429.206 kb on - strand, within PGA1_c04410at 429.206 kb on - strand, within PGA1_c04410at 429.206 kb on - strand, within PGA1_c04410at 429.239 kb on - strandat 429.247 kb on - strandat 429.260 kb on - strandat 429.271 kb on - strandat 429.295 kb on + strandat 429.354 kb on - strandat 429.424 kb on + strandat 429.424 kb on + strandat 429.450 kb on - strandat 429.499 kb on - strandat 429.523 kb on - strandat 429.556 kb on + strand, within PGA1_c04420at 429.564 kb on - strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.609 kb on + strand, within PGA1_c04420at 429.727 kb on - strand, within PGA1_c04420at 429.734 kb on + strand, within PGA1_c04420at 429.742 kb on - strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.786 kb on + strand, within PGA1_c04420at 429.789 kb on - strand, within PGA1_c04420at 429.851 kb on + strand, within PGA1_c04420at 429.897 kb on + strand, within PGA1_c04420at 429.932 kb on - strand, within PGA1_c04420at 430.015 kb on + strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.021 kb on + strand, within PGA1_c04420at 430.055 kb on + strand, within PGA1_c04420at 430.070 kb on + strand, within PGA1_c04420at 430.091 kb on + strand, within PGA1_c04420at 430.099 kb on + strand, within PGA1_c04420at 430.121 kb on + strand, within PGA1_c04420at 430.126 kb on + strand, within PGA1_c04420at 430.134 kb on - strand, within PGA1_c04420at 430.246 kb on + strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.265 kb on + strand, within PGA1_c04420at 430.273 kb on - strand, within PGA1_c04420at 430.288 kb on - strand, within PGA1_c04420at 430.310 kb on + strand, within PGA1_c04420at 430.315 kb on - strand, within PGA1_c04420

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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426,996 + PGA1_c04400 0.58 -3.1
427,028 - PGA1_c04400 0.59 +0.4
427,052 + PGA1_c04400 0.60 +0.1
427,062 + PGA1_c04400 0.61 -1.5
427,079 - PGA1_c04400 0.61 +0.9
427,099 - PGA1_c04400 0.62 -0.8
427,132 - PGA1_c04400 0.64 -1.0
427,190 + PGA1_c04400 0.66 +0.1
427,208 - PGA1_c04400 0.67 +0.7
427,208 - PGA1_c04400 0.67 -0.7
427,222 - PGA1_c04400 0.68 -0.8
427,248 + PGA1_c04400 0.69 -0.3
427,278 - PGA1_c04400 0.70 -0.1
427,306 + PGA1_c04400 0.71 +1.0
427,452 + PGA1_c04400 0.77 +1.6
427,459 - PGA1_c04400 0.78 -1.5
427,486 + PGA1_c04400 0.79 +0.2
427,494 - PGA1_c04400 0.79 +0.6
427,520 - PGA1_c04400 0.80 +1.4
427,696 - PGA1_c04400 0.88 +0.2
427,703 + PGA1_c04400 0.88 -0.2
427,827 + +0.6
427,840 + -0.3
427,857 - -0.5
427,877 + +0.8
427,877 + +0.6
427,941 + +0.6
427,950 + -1.7
427,958 - +1.8
427,992 + +1.1
427,992 + -0.0
428,000 - -0.5
428,008 + +0.2
428,168 + PGA1_c04410 0.12 +0.2
428,208 + PGA1_c04410 0.15 +0.8
428,219 + PGA1_c04410 0.16 -0.1
428,224 + PGA1_c04410 0.17 -0.7
428,237 - PGA1_c04410 0.18 -2.2
428,262 + PGA1_c04410 0.19 +0.0
428,267 + PGA1_c04410 0.20 -0.0
428,279 + PGA1_c04410 0.21 +0.7
428,279 + PGA1_c04410 0.21 +1.3
428,287 - PGA1_c04410 0.21 +1.7
428,289 - PGA1_c04410 0.21 -2.4
428,366 + PGA1_c04410 0.27 +0.1
428,374 - PGA1_c04410 0.27 -0.4
428,387 + PGA1_c04410 0.28 -0.5
428,395 - PGA1_c04410 0.29 +1.4
428,427 + PGA1_c04410 0.31 -0.4
428,430 - PGA1_c04410 0.32 -0.7
428,445 - PGA1_c04410 0.33 +0.4
428,472 + PGA1_c04410 0.35 +0.7
428,516 - PGA1_c04410 0.38 +0.4
428,523 + PGA1_c04410 0.38 +0.1
428,570 - PGA1_c04410 0.42 -0.4
428,611 - PGA1_c04410 0.45 -0.5
428,611 - PGA1_c04410 0.45 -1.0
428,613 + PGA1_c04410 0.45 -2.0
428,613 + PGA1_c04410 0.45 +0.2
428,620 + PGA1_c04410 0.45 -0.6
428,620 + PGA1_c04410 0.45 -0.8
428,622 + PGA1_c04410 0.45 -0.4
428,628 - PGA1_c04410 0.46 +1.3
428,628 - PGA1_c04410 0.46 +1.2
428,630 - PGA1_c04410 0.46 +0.0
428,637 + PGA1_c04410 0.47 +1.2
428,637 + PGA1_c04410 0.47 -0.9
428,637 + PGA1_c04410 0.47 -1.6
428,638 - PGA1_c04410 0.47 -0.5
428,645 - PGA1_c04410 0.47 -0.5
428,682 + PGA1_c04410 0.50 -0.5
428,750 - PGA1_c04410 0.55 +1.0
428,776 + PGA1_c04410 0.57 -0.2
428,798 - PGA1_c04410 0.58 +0.6
428,855 + PGA1_c04410 0.62 -1.9
428,891 + PGA1_c04410 0.65 -0.4
428,891 + PGA1_c04410 0.65 -2.9
428,899 - PGA1_c04410 0.66 +0.6
428,899 - PGA1_c04410 0.66 -0.9
428,929 + PGA1_c04410 0.68 +1.4
428,932 + PGA1_c04410 0.68 -2.5
429,000 - PGA1_c04410 0.73 -0.7
429,021 + PGA1_c04410 0.74 +0.4
429,026 + PGA1_c04410 0.75 -2.0
429,094 + PGA1_c04410 0.80 +1.2
429,112 - PGA1_c04410 0.81 +0.5
429,128 + PGA1_c04410 0.82 -1.5
429,151 + PGA1_c04410 0.84 -0.7
429,159 - PGA1_c04410 0.84 -0.0
429,159 - PGA1_c04410 0.84 -3.4
429,193 + PGA1_c04410 0.87 +0.6
429,193 + PGA1_c04410 0.87 +0.8
429,193 + PGA1_c04410 0.87 +0.1
429,198 + PGA1_c04410 0.87 +1.7
429,198 + PGA1_c04410 0.87 +1.0
429,198 + PGA1_c04410 0.87 +0.6
429,201 - PGA1_c04410 0.88 -0.6
429,206 - PGA1_c04410 0.88 +1.6
429,206 - PGA1_c04410 0.88 +0.7
429,206 - PGA1_c04410 0.88 +1.0
429,239 - +0.7
429,247 - -0.2
429,260 - +0.4
429,271 - +0.8
429,295 + +1.3
429,354 - -0.7
429,424 + +1.9
429,424 + +0.5
429,450 - -2.2
429,499 - +1.3
429,523 - +0.2
429,556 + PGA1_c04420 0.13 +1.7
429,564 - PGA1_c04420 0.13 +2.2
429,583 + PGA1_c04420 0.15 +1.6
429,583 + PGA1_c04420 0.15 -1.4
429,583 + PGA1_c04420 0.15 -0.8
429,583 + PGA1_c04420 0.15 +0.4
429,583 + PGA1_c04420 0.15 +2.4
429,583 + PGA1_c04420 0.15 +1.2
429,583 + PGA1_c04420 0.15 +1.5
429,583 + PGA1_c04420 0.15 -1.0
429,583 + PGA1_c04420 0.15 +0.6
429,583 + PGA1_c04420 0.15 +1.0
429,591 - PGA1_c04420 0.16 +0.7
429,591 - PGA1_c04420 0.16 +0.8
429,591 - PGA1_c04420 0.16 -2.2
429,591 - PGA1_c04420 0.16 +1.6
429,591 - PGA1_c04420 0.16 +1.3
429,591 - PGA1_c04420 0.16 -0.6
429,591 - PGA1_c04420 0.16 +1.1
429,591 - PGA1_c04420 0.16 +0.9
429,591 - PGA1_c04420 0.16 +0.9
429,591 - PGA1_c04420 0.16 +0.4
429,591 - PGA1_c04420 0.16 +0.7
429,609 + PGA1_c04420 0.17 +1.0
429,727 - PGA1_c04420 0.27 +1.2
429,734 + PGA1_c04420 0.28 +1.0
429,742 - PGA1_c04420 0.29 -1.0
429,781 + PGA1_c04420 0.32 -1.5
429,781 + PGA1_c04420 0.32 +2.7
429,786 + PGA1_c04420 0.33 +2.7
429,789 - PGA1_c04420 0.33 +0.7
429,851 + PGA1_c04420 0.38 +0.9
429,897 + PGA1_c04420 0.42 +1.1
429,932 - PGA1_c04420 0.45 +0.6
430,015 + PGA1_c04420 0.52 +0.4
430,018 - PGA1_c04420 0.53 +0.7
430,018 - PGA1_c04420 0.53 +3.3
430,018 - PGA1_c04420 0.53 +1.1
430,021 + PGA1_c04420 0.53 +0.7
430,055 + PGA1_c04420 0.56 +1.0
430,070 + PGA1_c04420 0.57 -1.0
430,091 + PGA1_c04420 0.59 +0.3
430,099 + PGA1_c04420 0.60 +0.5
430,121 + PGA1_c04420 0.62 +1.8
430,126 + PGA1_c04420 0.62 +1.2
430,134 - PGA1_c04420 0.63 -2.0
430,246 + PGA1_c04420 0.72 +1.1
430,254 - PGA1_c04420 0.73 +1.3
430,254 - PGA1_c04420 0.73 -0.7
430,254 - PGA1_c04420 0.73 -1.0
430,254 - PGA1_c04420 0.73 +2.7
430,265 + PGA1_c04420 0.74 +0.8
430,273 - PGA1_c04420 0.75 +1.6
430,288 - PGA1_c04420 0.76 +0.6
430,310 + PGA1_c04420 0.78 +1.0
430,315 - PGA1_c04420 0.78 -0.4

Or see this region's nucleotide sequence