Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04390

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04380 and PGA1_c04390 overlap by 4 nucleotidesPGA1_c04390 and PGA1_c04400 are separated by 415 nucleotides PGA1_c04380: PGA1_c04380 - putative colanic acid biosynthesis glycosyltransferase WcaL, at 422,739 to 423,998 _c04380 PGA1_c04390: PGA1_c04390 - Predicted glycosyl transferase, at 423,995 to 425,206 _c04390 PGA1_c04400: PGA1_c04400 - mechanosensitive ion channel-like protein, at 425,622 to 427,991 _c04400 Position (kb) 423 424 425 426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 423.041 kb on + strand, within PGA1_c04380at 423.049 kb on - strand, within PGA1_c04380at 423.065 kb on + strand, within PGA1_c04380at 423.073 kb on - strand, within PGA1_c04380at 423.073 kb on - strand, within PGA1_c04380at 423.238 kb on + strand, within PGA1_c04380at 423.293 kb on - strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.358 kb on - strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.397 kb on - strand, within PGA1_c04380at 423.451 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.529 kb on + strand, within PGA1_c04380at 423.534 kb on + strand, within PGA1_c04380at 423.537 kb on - strand, within PGA1_c04380at 423.585 kb on - strand, within PGA1_c04380at 423.585 kb on - strand, within PGA1_c04380at 423.645 kb on - strand, within PGA1_c04380at 423.645 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.733 kb on + strand, within PGA1_c04380at 423.739 kb on + strand, within PGA1_c04380at 423.741 kb on - strand, within PGA1_c04380at 423.851 kb on - strand, within PGA1_c04380at 423.876 kb on + strandat 423.882 kb on + strandat 423.900 kb on + strandat 423.940 kb on - strandat 423.940 kb on - strandat 423.940 kb on - strandat 424.055 kb on + strandat 424.095 kb on + strandat 424.268 kb on + strand, within PGA1_c04390at 424.355 kb on + strand, within PGA1_c04390at 424.370 kb on - strand, within PGA1_c04390at 424.494 kb on + strand, within PGA1_c04390at 424.548 kb on - strand, within PGA1_c04390at 424.560 kb on + strand, within PGA1_c04390at 424.568 kb on - strand, within PGA1_c04390at 424.573 kb on + strand, within PGA1_c04390at 424.606 kb on - strand, within PGA1_c04390at 424.621 kb on + strand, within PGA1_c04390at 424.629 kb on - strand, within PGA1_c04390at 424.629 kb on - strand, within PGA1_c04390at 424.779 kb on + strand, within PGA1_c04390at 424.821 kb on - strand, within PGA1_c04390at 424.891 kb on + strand, within PGA1_c04390at 424.899 kb on + strand, within PGA1_c04390at 424.912 kb on - strand, within PGA1_c04390at 424.963 kb on + strand, within PGA1_c04390at 425.044 kb on + strand, within PGA1_c04390at 425.055 kb on + strand, within PGA1_c04390at 425.063 kb on - strand, within PGA1_c04390at 425.143 kb on - strandat 425.189 kb on - strandat 425.334 kb on + strandat 425.347 kb on + strandat 425.348 kb on - strandat 425.360 kb on - strandat 425.360 kb on - strandat 425.360 kb on - strandat 425.362 kb on + strandat 425.377 kb on + strandat 425.377 kb on + strandat 425.377 kb on + strandat 425.377 kb on + strandat 425.377 kb on + strandat 425.385 kb on - strandat 425.385 kb on - strandat 425.395 kb on - strandat 425.439 kb on + strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.448 kb on - strandat 425.469 kb on - strandat 425.513 kb on + strandat 425.513 kb on + strandat 425.521 kb on - strandat 425.534 kb on + strandat 425.542 kb on - strandat 425.608 kb on + strandat 425.698 kb on + strandat 425.698 kb on + strandat 425.699 kb on - strandat 425.706 kb on - strandat 425.706 kb on - strandat 425.716 kb on - strandat 425.765 kb on + strandat 425.797 kb on + strandat 425.829 kb on - strandat 425.840 kb on + strandat 425.853 kb on - strandat 425.891 kb on - strand, within PGA1_c04400at 425.899 kb on + strand, within PGA1_c04400at 425.904 kb on + strand, within PGA1_c04400at 425.904 kb on + strand, within PGA1_c04400at 425.904 kb on + strand, within PGA1_c04400at 425.907 kb on - strand, within PGA1_c04400at 425.912 kb on - strand, within PGA1_c04400at 425.917 kb on - strand, within PGA1_c04400at 425.936 kb on + strand, within PGA1_c04400at 425.936 kb on + strand, within PGA1_c04400at 425.946 kb on + strand, within PGA1_c04400at 425.946 kb on + strand, within PGA1_c04400at 425.946 kb on + strand, within PGA1_c04400at 425.954 kb on - strand, within PGA1_c04400at 425.954 kb on - strand, within PGA1_c04400at 425.954 kb on - strand, within PGA1_c04400at 425.967 kb on - strand, within PGA1_c04400at 425.999 kb on - strand, within PGA1_c04400at 425.999 kb on - strand, within PGA1_c04400at 426.019 kb on - strand, within PGA1_c04400at 426.019 kb on - strand, within PGA1_c04400at 426.024 kb on - strand, within PGA1_c04400at 426.024 kb on - strand, within PGA1_c04400at 426.029 kb on + strand, within PGA1_c04400at 426.040 kb on + strand, within PGA1_c04400at 426.040 kb on + strand, within PGA1_c04400at 426.040 kb on + strand, within PGA1_c04400at 426.040 kb on + strand, within PGA1_c04400at 426.040 kb on + strand, within PGA1_c04400at 426.040 kb on + strand, within PGA1_c04400at 426.048 kb on - strand, within PGA1_c04400at 426.048 kb on - strand, within PGA1_c04400at 426.082 kb on + strand, within PGA1_c04400at 426.096 kb on + strand, within PGA1_c04400at 426.096 kb on + strand, within PGA1_c04400at 426.096 kb on + strand, within PGA1_c04400at 426.104 kb on - strand, within PGA1_c04400at 426.120 kb on + strand, within PGA1_c04400at 426.127 kb on + strand, within PGA1_c04400at 426.128 kb on + strand, within PGA1_c04400at 426.128 kb on - strand, within PGA1_c04400at 426.162 kb on + strand, within PGA1_c04400at 426.201 kb on + strand, within PGA1_c04400

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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423,041 + PGA1_c04380 0.24 -0.3
423,049 - PGA1_c04380 0.25 -2.3
423,065 + PGA1_c04380 0.26 -2.4
423,073 - PGA1_c04380 0.27 -0.6
423,073 - PGA1_c04380 0.27 -2.8
423,238 + PGA1_c04380 0.40 -3.1
423,293 - PGA1_c04380 0.44 -2.3
423,350 + PGA1_c04380 0.48 -0.2
423,350 + PGA1_c04380 0.48 -3.2
423,350 + PGA1_c04380 0.48 -0.7
423,350 + PGA1_c04380 0.48 -1.0
423,358 - PGA1_c04380 0.49 -3.4
423,394 + PGA1_c04380 0.52 -2.9
423,394 + PGA1_c04380 0.52 -1.8
423,394 + PGA1_c04380 0.52 -1.8
423,397 - PGA1_c04380 0.52 -2.9
423,451 + PGA1_c04380 0.57 -3.2
423,499 + PGA1_c04380 0.60 -1.3
423,499 + PGA1_c04380 0.60 -3.4
423,499 + PGA1_c04380 0.60 -2.6
423,529 + PGA1_c04380 0.63 -0.0
423,534 + PGA1_c04380 0.63 -2.0
423,537 - PGA1_c04380 0.63 -1.6
423,585 - PGA1_c04380 0.67 -1.0
423,585 - PGA1_c04380 0.67 -1.3
423,645 - PGA1_c04380 0.72 -1.0
423,645 - PGA1_c04380 0.72 -1.1
423,650 - PGA1_c04380 0.72 -0.6
423,650 - PGA1_c04380 0.72 -0.8
423,650 - PGA1_c04380 0.72 -0.9
423,650 - PGA1_c04380 0.72 -2.3
423,733 + PGA1_c04380 0.79 -2.8
423,739 + PGA1_c04380 0.79 -1.8
423,741 - PGA1_c04380 0.80 -2.5
423,851 - PGA1_c04380 0.88 -0.8
423,876 + -2.0
423,882 + -2.9
423,900 + -1.6
423,940 - -0.6
423,940 - -2.5
423,940 - -1.0
424,055 + -1.6
424,095 + -1.4
424,268 + PGA1_c04390 0.23 -2.3
424,355 + PGA1_c04390 0.30 -0.2
424,370 - PGA1_c04390 0.31 -0.8
424,494 + PGA1_c04390 0.41 -0.9
424,548 - PGA1_c04390 0.46 -1.6
424,560 + PGA1_c04390 0.47 -2.9
424,568 - PGA1_c04390 0.47 -0.8
424,573 + PGA1_c04390 0.48 -1.5
424,606 - PGA1_c04390 0.50 -0.6
424,621 + PGA1_c04390 0.52 -1.5
424,629 - PGA1_c04390 0.52 -1.3
424,629 - PGA1_c04390 0.52 -2.9
424,779 + PGA1_c04390 0.65 -1.6
424,821 - PGA1_c04390 0.68 -1.8
424,891 + PGA1_c04390 0.74 -1.3
424,899 + PGA1_c04390 0.75 -3.1
424,912 - PGA1_c04390 0.76 -1.2
424,963 + PGA1_c04390 0.80 -1.0
425,044 + PGA1_c04390 0.87 -3.3
425,055 + PGA1_c04390 0.87 -1.9
425,063 - PGA1_c04390 0.88 +0.4
425,143 - -1.0
425,189 - -1.0
425,334 + -0.0
425,347 + -0.5
425,348 - -1.0
425,360 - -0.6
425,360 - -0.8
425,360 - -1.9
425,362 + -0.6
425,377 + -2.9
425,377 + -1.8
425,377 + -0.7
425,377 + -0.8
425,377 + -1.6
425,385 - -2.0
425,385 - -2.3
425,395 - -1.2
425,439 + -3.8
425,447 - +0.6
425,447 - -2.2
425,448 - -1.6
425,469 - +3.0
425,513 + -1.4
425,513 + -0.6
425,521 - +0.7
425,534 + +0.7
425,542 - -1.0
425,608 + +0.9
425,698 + -0.8
425,698 + +0.7
425,699 - -1.8
425,706 - -0.2
425,706 - +2.1
425,716 - +1.0
425,765 + -0.5
425,797 + +2.6
425,829 - +0.6
425,840 + +0.2
425,853 - +1.1
425,891 - PGA1_c04400 0.11 -0.6
425,899 + PGA1_c04400 0.12 -0.3
425,904 + PGA1_c04400 0.12 -0.0
425,904 + PGA1_c04400 0.12 -1.8
425,904 + PGA1_c04400 0.12 +0.2
425,907 - PGA1_c04400 0.12 +1.5
425,912 - PGA1_c04400 0.12 -0.4
425,917 - PGA1_c04400 0.12 +0.1
425,936 + PGA1_c04400 0.13 +1.0
425,936 + PGA1_c04400 0.13 -1.1
425,946 + PGA1_c04400 0.14 +0.8
425,946 + PGA1_c04400 0.14 -0.1
425,946 + PGA1_c04400 0.14 +1.3
425,954 - PGA1_c04400 0.14 +1.7
425,954 - PGA1_c04400 0.14 +1.6
425,954 - PGA1_c04400 0.14 +0.2
425,967 - PGA1_c04400 0.15 +1.0
425,999 - PGA1_c04400 0.16 +0.3
425,999 - PGA1_c04400 0.16 -1.0
426,019 - PGA1_c04400 0.17 +0.0
426,019 - PGA1_c04400 0.17 +0.3
426,024 - PGA1_c04400 0.17 -0.4
426,024 - PGA1_c04400 0.17 -0.3
426,029 + PGA1_c04400 0.17 +0.9
426,040 + PGA1_c04400 0.18 +0.1
426,040 + PGA1_c04400 0.18 +0.5
426,040 + PGA1_c04400 0.18 +0.7
426,040 + PGA1_c04400 0.18 -0.6
426,040 + PGA1_c04400 0.18 +0.1
426,040 + PGA1_c04400 0.18 +2.8
426,048 - PGA1_c04400 0.18 +1.6
426,048 - PGA1_c04400 0.18 +0.1
426,082 + PGA1_c04400 0.19 +1.9
426,096 + PGA1_c04400 0.20 -0.4
426,096 + PGA1_c04400 0.20 +0.7
426,096 + PGA1_c04400 0.20 -0.3
426,104 - PGA1_c04400 0.20 +0.4
426,120 + PGA1_c04400 0.21 +0.2
426,127 + PGA1_c04400 0.21 +0.2
426,128 + PGA1_c04400 0.21 +0.5
426,128 - PGA1_c04400 0.21 +0.6
426,162 + PGA1_c04400 0.23 -0.5
426,201 + PGA1_c04400 0.24 +0.1

Or see this region's nucleotide sequence