Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04380

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c04370 and PGA1_c04380 are separated by 80 nucleotidesPGA1_c04380 and PGA1_c04390 overlap by 4 nucleotides PGA1_c04370: PGA1_c04370 - putative glycosyltransferase protein, at 421,624 to 422,658 _c04370 PGA1_c04380: PGA1_c04380 - putative colanic acid biosynthesis glycosyltransferase WcaL, at 422,739 to 423,998 _c04380 PGA1_c04390: PGA1_c04390 - Predicted glycosyl transferase, at 423,995 to 425,206 _c04390 Position (kb) 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 421.748 kb on - strand, within PGA1_c04370at 421.808 kb on - strand, within PGA1_c04370at 421.819 kb on - strand, within PGA1_c04370at 421.828 kb on + strand, within PGA1_c04370at 421.838 kb on + strand, within PGA1_c04370at 421.846 kb on - strand, within PGA1_c04370at 421.848 kb on + strand, within PGA1_c04370at 421.856 kb on - strand, within PGA1_c04370at 421.936 kb on + strand, within PGA1_c04370at 422.026 kb on + strand, within PGA1_c04370at 422.039 kb on - strand, within PGA1_c04370at 422.044 kb on - strand, within PGA1_c04370at 422.050 kb on - strand, within PGA1_c04370at 422.084 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.146 kb on + strand, within PGA1_c04370at 422.169 kb on - strand, within PGA1_c04370at 422.171 kb on - strand, within PGA1_c04370at 422.272 kb on + strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.302 kb on + strand, within PGA1_c04370at 422.396 kb on - strand, within PGA1_c04370at 422.537 kb on + strand, within PGA1_c04370at 422.545 kb on - strand, within PGA1_c04370at 422.619 kb on + strandat 422.647 kb on - strandat 422.647 kb on - strandat 422.669 kb on + strandat 422.675 kb on - strandat 422.682 kb on - strandat 422.712 kb on + strandat 422.735 kb on + strandat 422.743 kb on - strandat 422.828 kb on - strandat 422.852 kb on + strandat 422.878 kb on - strand, within PGA1_c04380at 422.879 kb on - strand, within PGA1_c04380at 422.892 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.926 kb on - strand, within PGA1_c04380at 422.926 kb on - strand, within PGA1_c04380at 422.926 kb on - strand, within PGA1_c04380at 422.943 kb on + strand, within PGA1_c04380at 422.961 kb on - strand, within PGA1_c04380at 422.962 kb on + strand, within PGA1_c04380at 422.983 kb on + strand, within PGA1_c04380at 423.041 kb on + strand, within PGA1_c04380at 423.049 kb on - strand, within PGA1_c04380at 423.065 kb on + strand, within PGA1_c04380at 423.073 kb on - strand, within PGA1_c04380at 423.073 kb on - strand, within PGA1_c04380at 423.238 kb on + strand, within PGA1_c04380at 423.293 kb on - strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.358 kb on - strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.397 kb on - strand, within PGA1_c04380at 423.451 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.529 kb on + strand, within PGA1_c04380at 423.534 kb on + strand, within PGA1_c04380at 423.537 kb on - strand, within PGA1_c04380at 423.585 kb on - strand, within PGA1_c04380at 423.585 kb on - strand, within PGA1_c04380at 423.645 kb on - strand, within PGA1_c04380at 423.645 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.733 kb on + strand, within PGA1_c04380at 423.739 kb on + strand, within PGA1_c04380at 423.741 kb on - strand, within PGA1_c04380at 423.851 kb on - strand, within PGA1_c04380at 423.876 kb on + strandat 423.882 kb on + strandat 423.900 kb on + strandat 423.940 kb on - strandat 423.940 kb on - strandat 423.940 kb on - strandat 424.055 kb on + strandat 424.095 kb on + strandat 424.268 kb on + strand, within PGA1_c04390at 424.355 kb on + strand, within PGA1_c04390at 424.370 kb on - strand, within PGA1_c04390at 424.494 kb on + strand, within PGA1_c04390at 424.548 kb on - strand, within PGA1_c04390at 424.560 kb on + strand, within PGA1_c04390at 424.568 kb on - strand, within PGA1_c04390at 424.573 kb on + strand, within PGA1_c04390at 424.606 kb on - strand, within PGA1_c04390at 424.621 kb on + strand, within PGA1_c04390at 424.629 kb on - strand, within PGA1_c04390at 424.629 kb on - strand, within PGA1_c04390at 424.779 kb on + strand, within PGA1_c04390at 424.821 kb on - strand, within PGA1_c04390at 424.891 kb on + strand, within PGA1_c04390at 424.899 kb on + strand, within PGA1_c04390at 424.912 kb on - strand, within PGA1_c04390at 424.963 kb on + strand, within PGA1_c04390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
remove
421,748 - PGA1_c04370 0.12 -3.5
421,808 - PGA1_c04370 0.18 -1.4
421,819 - PGA1_c04370 0.19 -2.6
421,828 + PGA1_c04370 0.20 -2.7
421,838 + PGA1_c04370 0.21 -2.2
421,846 - PGA1_c04370 0.21 -0.6
421,848 + PGA1_c04370 0.22 -1.9
421,856 - PGA1_c04370 0.22 -2.7
421,936 + PGA1_c04370 0.30 -1.5
422,026 + PGA1_c04370 0.39 -2.8
422,039 - PGA1_c04370 0.40 -1.1
422,044 - PGA1_c04370 0.41 -0.6
422,050 - PGA1_c04370 0.41 -3.6
422,084 + PGA1_c04370 0.44 -1.2
422,141 + PGA1_c04370 0.50 -2.5
422,141 + PGA1_c04370 0.50 -2.9
422,146 + PGA1_c04370 0.50 -3.3
422,169 - PGA1_c04370 0.53 -2.3
422,171 - PGA1_c04370 0.53 -1.6
422,272 + PGA1_c04370 0.63 -1.3
422,280 - PGA1_c04370 0.63 -1.9
422,280 - PGA1_c04370 0.63 -0.0
422,302 + PGA1_c04370 0.66 -3.1
422,396 - PGA1_c04370 0.75 -1.8
422,537 + PGA1_c04370 0.88 -2.6
422,545 - PGA1_c04370 0.89 -0.9
422,619 + -0.6
422,647 - -3.1
422,647 - -2.0
422,669 + +0.1
422,675 - -0.6
422,682 - +1.0
422,712 + -0.2
422,735 + -1.5
422,743 - +1.6
422,828 - -1.3
422,852 + -1.6
422,878 - PGA1_c04380 0.11 -2.9
422,879 - PGA1_c04380 0.11 -2.2
422,892 + PGA1_c04380 0.12 -1.6
422,918 + PGA1_c04380 0.14 -2.0
422,918 + PGA1_c04380 0.14 -1.2
422,918 + PGA1_c04380 0.14 -0.8
422,918 + PGA1_c04380 0.14 -1.8
422,918 + PGA1_c04380 0.14 -2.5
422,918 + PGA1_c04380 0.14 -1.3
422,918 + PGA1_c04380 0.14 -1.0
422,918 + PGA1_c04380 0.14 -1.8
422,918 + PGA1_c04380 0.14 -2.6
422,926 - PGA1_c04380 0.15 -0.3
422,926 - PGA1_c04380 0.15 -2.7
422,926 - PGA1_c04380 0.15 +2.4
422,943 + PGA1_c04380 0.16 -3.3
422,961 - PGA1_c04380 0.18 -3.6
422,962 + PGA1_c04380 0.18 -1.8
422,983 + PGA1_c04380 0.19 +0.4
423,041 + PGA1_c04380 0.24 -0.3
423,049 - PGA1_c04380 0.25 -2.3
423,065 + PGA1_c04380 0.26 -2.4
423,073 - PGA1_c04380 0.27 -0.6
423,073 - PGA1_c04380 0.27 -2.8
423,238 + PGA1_c04380 0.40 -3.1
423,293 - PGA1_c04380 0.44 -2.3
423,350 + PGA1_c04380 0.48 -0.2
423,350 + PGA1_c04380 0.48 -3.2
423,350 + PGA1_c04380 0.48 -0.7
423,350 + PGA1_c04380 0.48 -1.0
423,358 - PGA1_c04380 0.49 -3.4
423,394 + PGA1_c04380 0.52 -2.9
423,394 + PGA1_c04380 0.52 -1.8
423,394 + PGA1_c04380 0.52 -1.8
423,397 - PGA1_c04380 0.52 -2.9
423,451 + PGA1_c04380 0.57 -3.2
423,499 + PGA1_c04380 0.60 -1.3
423,499 + PGA1_c04380 0.60 -3.4
423,499 + PGA1_c04380 0.60 -2.6
423,529 + PGA1_c04380 0.63 -0.0
423,534 + PGA1_c04380 0.63 -2.0
423,537 - PGA1_c04380 0.63 -1.6
423,585 - PGA1_c04380 0.67 -1.0
423,585 - PGA1_c04380 0.67 -1.3
423,645 - PGA1_c04380 0.72 -1.0
423,645 - PGA1_c04380 0.72 -1.1
423,650 - PGA1_c04380 0.72 -0.6
423,650 - PGA1_c04380 0.72 -0.8
423,650 - PGA1_c04380 0.72 -0.9
423,650 - PGA1_c04380 0.72 -2.3
423,733 + PGA1_c04380 0.79 -2.8
423,739 + PGA1_c04380 0.79 -1.8
423,741 - PGA1_c04380 0.80 -2.5
423,851 - PGA1_c04380 0.88 -0.8
423,876 + -2.0
423,882 + -2.9
423,900 + -1.6
423,940 - -0.6
423,940 - -2.5
423,940 - -1.0
424,055 + -1.6
424,095 + -1.4
424,268 + PGA1_c04390 0.23 -2.3
424,355 + PGA1_c04390 0.30 -0.2
424,370 - PGA1_c04390 0.31 -0.8
424,494 + PGA1_c04390 0.41 -0.9
424,548 - PGA1_c04390 0.46 -1.6
424,560 + PGA1_c04390 0.47 -2.9
424,568 - PGA1_c04390 0.47 -0.8
424,573 + PGA1_c04390 0.48 -1.5
424,606 - PGA1_c04390 0.50 -0.6
424,621 + PGA1_c04390 0.52 -1.5
424,629 - PGA1_c04390 0.52 -1.3
424,629 - PGA1_c04390 0.52 -2.9
424,779 + PGA1_c04390 0.65 -1.6
424,821 - PGA1_c04390 0.68 -1.8
424,891 + PGA1_c04390 0.74 -1.3
424,899 + PGA1_c04390 0.75 -3.1
424,912 - PGA1_c04390 0.76 -1.2
424,963 + PGA1_c04390 0.80 -1.0

Or see this region's nucleotide sequence