Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00450

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00440 and PGA1_65p00450 are separated by 307 nucleotidesPGA1_65p00450 and PGA1_65p00460 are separated by 84 nucleotides PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506 _65p00440 PGA1_65p00450: PGA1_65p00450 - UDP-glucose 6-dehydrogenase Ugd, at 60,814 to 62,118 _65p00450 PGA1_65p00460: PGA1_65p00460 - putative plasmid partition protein B, at 62,203 to 63,330 _65p00460 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 60.201 kb on + strand, within PGA1_65p00440at 60.503 kb on - strandat 60.524 kb on - strandat 60.524 kb on - strandat 60.529 kb on - strandat 60.531 kb on + strandat 60.764 kb on - strandat 60.798 kb on + strandat 60.828 kb on + strandat 60.886 kb on + strandat 60.894 kb on - strandat 61.149 kb on + strand, within PGA1_65p00450at 61.149 kb on + strand, within PGA1_65p00450at 61.207 kb on + strand, within PGA1_65p00450at 61.644 kb on - strand, within PGA1_65p00450at 61.719 kb on + strand, within PGA1_65p00450at 61.755 kb on + strand, within PGA1_65p00450at 61.817 kb on + strand, within PGA1_65p00450at 61.837 kb on - strand, within PGA1_65p00450at 61.850 kb on + strand, within PGA1_65p00450at 61.918 kb on - strand, within PGA1_65p00450at 62.021 kb on + strandat 62.099 kb on + strandat 62.486 kb on - strand, within PGA1_65p00460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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60,201 + PGA1_65p00440 0.70 -0.2
60,503 - -0.2
60,524 - -2.3
60,524 - +1.4
60,529 - +0.8
60,531 + +0.2
60,764 - -2.7
60,798 + +2.6
60,828 + -1.7
60,886 + -1.7
60,894 - -0.2
61,149 + PGA1_65p00450 0.26 -2.2
61,149 + PGA1_65p00450 0.26 -2.2
61,207 + PGA1_65p00450 0.30 -1.5
61,644 - PGA1_65p00450 0.64 -1.0
61,719 + PGA1_65p00450 0.69 -1.7
61,755 + PGA1_65p00450 0.72 -2.0
61,817 + PGA1_65p00450 0.77 -1.2
61,837 - PGA1_65p00450 0.78 -1.2
61,850 + PGA1_65p00450 0.79 -1.0
61,918 - PGA1_65p00450 0.85 -1.7
62,021 + -2.2
62,099 + -2.5
62,486 - PGA1_65p00460 0.25 +0.7

Or see this region's nucleotide sequence