Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00420 and PGA1_65p00430 are separated by 8 nucleotides PGA1_65p00430 and PGA1_65p00440 are separated by 154 nucleotides
PGA1_65p00420: PGA1_65p00420 - putative ABC type transporter, at 57,381 to 58,289
_65p00420
PGA1_65p00430: PGA1_65p00430 - putative glycosyl transferase, at 58,298 to 59,341
_65p00430
PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506
_65p00440
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.419 kb on - strand at 57.451 kb on + strand at 57.454 kb on - strand at 57.485 kb on - strand, within PGA1_65p00420 at 57.634 kb on - strand, within PGA1_65p00420 at 57.748 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 58.026 kb on + strand, within PGA1_65p00420 at 58.034 kb on - strand, within PGA1_65p00420 at 58.106 kb on + strand, within PGA1_65p00420 at 58.186 kb on - strand, within PGA1_65p00420 at 58.196 kb on - strand, within PGA1_65p00420 at 58.366 kb on + strand at 58.366 kb on + strand at 58.550 kb on + strand, within PGA1_65p00430 at 58.565 kb on - strand, within PGA1_65p00430 at 58.633 kb on + strand at 58.633 kb on + strand, within PGA1_65p00430 at 58.633 kb on + strand, within PGA1_65p00430 at 58.641 kb on - strand, within PGA1_65p00430 at 58.646 kb on - strand, within PGA1_65p00430 at 58.648 kb on - strand, within PGA1_65p00430 at 58.651 kb on + strand, within PGA1_65p00430 at 58.736 kb on + strand, within PGA1_65p00430 at 58.820 kb on - strand, within PGA1_65p00430 at 58.931 kb on + strand, within PGA1_65p00430 at 58.939 kb on - strand, within PGA1_65p00430 at 59.115 kb on + strand, within PGA1_65p00430 at 59.316 kb on + strand at 59.393 kb on - strand at 59.459 kb on + strand at 60.201 kb on + strand, within PGA1_65p00440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 57,419 - +1.8 57,451 + +1.8 57,454 - +0.8 57,485 - PGA1_65p00420 0.11 -0.7 57,634 - PGA1_65p00420 0.28 -0.2 57,748 - PGA1_65p00420 0.40 -1.0 57,784 - PGA1_65p00420 0.44 -2.2 57,784 - PGA1_65p00420 0.44 +0.6 58,026 + PGA1_65p00420 0.71 +0.2 58,034 - PGA1_65p00420 0.72 +0.8 58,106 + PGA1_65p00420 0.80 +0.8 58,186 - PGA1_65p00420 0.89 +0.8 58,196 - PGA1_65p00420 0.90 +2.8 58,366 + +1.4 58,366 + +0.4 58,550 + PGA1_65p00430 0.24 -0.2 58,565 - PGA1_65p00430 0.26 -0.2 58,633 + -0.2 58,633 + PGA1_65p00430 0.32 -2.7 58,633 + PGA1_65p00430 0.32 -0.4 58,641 - PGA1_65p00430 0.33 +0.2 58,646 - PGA1_65p00430 0.33 -1.2 58,648 - PGA1_65p00430 0.34 -2.2 58,651 + PGA1_65p00430 0.34 -2.5 58,736 + PGA1_65p00430 0.42 +0.4 58,820 - PGA1_65p00430 0.50 +1.4 58,931 + PGA1_65p00430 0.61 +0.8 58,939 - PGA1_65p00430 0.61 -2.5 59,115 + PGA1_65p00430 0.78 +0.6 59,316 + -0.2 59,393 - -0.2 59,459 + +0.6 60,201 + PGA1_65p00440 0.70 -0.2
Or see this region's nucleotide sequence