Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00360 and PGA1_65p00370 are separated by 77 nucleotides PGA1_65p00370 and PGA1_65p00380 overlap by 4 nucleotides PGA1_65p00380 and PGA1_65p00390 are separated by 103 nucleotides
PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433
_65p00360
PGA1_65p00370: PGA1_65p00370 - putative glycosyl transferase, at 51,511 to 52,428
_65p00370
PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744
_65p00380
PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011
_65p00390
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 51.481 kb on + strand at 51.557 kb on - strand at 51.665 kb on - strand, within PGA1_65p00370 at 51.670 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.736 kb on + strand, within PGA1_65p00370 at 51.800 kb on - strand, within PGA1_65p00370 at 51.817 kb on + strand, within PGA1_65p00370 at 51.830 kb on + strand, within PGA1_65p00370 at 51.913 kb on - strand, within PGA1_65p00370 at 51.965 kb on - strand, within PGA1_65p00370 at 51.990 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.344 kb on - strand at 52.445 kb on - strand at 52.448 kb on - strand at 52.691 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.198 kb on - strand, within PGA1_65p00380 at 53.261 kb on + strand, within PGA1_65p00380 at 53.602 kb on + strand, within PGA1_65p00380 at 53.610 kb on - strand, within PGA1_65p00380 at 53.610 kb on - strand, within PGA1_65p00380 at 53.674 kb on + strand at 53.827 kb on - strand at 53.827 kb on - strand at 53.986 kb on + strand, within PGA1_65p00390 at 53.993 kb on + strand, within PGA1_65p00390 at 53.993 kb on + strand, within PGA1_65p00390 at 54.114 kb on - strand, within PGA1_65p00390 at 54.174 kb on - strand, within PGA1_65p00390 at 54.319 kb on + strand, within PGA1_65p00390 at 54.407 kb on + strand, within PGA1_65p00390 at 54.415 kb on - strand, within PGA1_65p00390 at 54.601 kb on + strand, within PGA1_65p00390 at 54.631 kb on - strand, within PGA1_65p00390 at 54.633 kb on + strand, within PGA1_65p00390 at 54.641 kb on - strand, within PGA1_65p00390 at 54.668 kb on - strand, within PGA1_65p00390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 51,481 + -0.4 51,557 - -0.9 51,665 - PGA1_65p00370 0.17 -1.7 51,670 - PGA1_65p00370 0.17 +2.2 51,675 - PGA1_65p00370 0.18 +1.4 51,675 - PGA1_65p00370 0.18 -0.0 51,736 + PGA1_65p00370 0.25 +2.2 51,800 - PGA1_65p00370 0.31 -0.2 51,817 + PGA1_65p00370 0.33 +2.8 51,830 + PGA1_65p00370 0.35 -1.3 51,913 - PGA1_65p00370 0.44 -0.2 51,965 - PGA1_65p00370 0.49 -1.2 51,990 - PGA1_65p00370 0.52 +1.6 52,135 - PGA1_65p00370 0.68 +0.8 52,135 - PGA1_65p00370 0.68 +0.8 52,344 - +1.4 52,445 - +0.4 52,448 - +1.0 52,691 - PGA1_65p00380 0.20 +1.8 53,197 - PGA1_65p00380 0.58 +2.2 53,197 - PGA1_65p00380 0.58 +1.1 53,198 - PGA1_65p00380 0.59 +2.2 53,261 + PGA1_65p00380 0.63 +1.6 53,602 + PGA1_65p00380 0.89 +1.2 53,610 - PGA1_65p00380 0.90 +1.2 53,610 - PGA1_65p00380 0.90 +0.4 53,674 + -1.2 53,827 - +0.4 53,827 - -0.2 53,986 + PGA1_65p00390 0.12 -0.2 53,993 + PGA1_65p00390 0.12 -2.2 53,993 + PGA1_65p00390 0.12 -1.5 54,114 - PGA1_65p00390 0.23 +0.3 54,174 - PGA1_65p00390 0.28 +2.6 54,319 + PGA1_65p00390 0.40 -1.2 54,407 + PGA1_65p00390 0.48 +2.8 54,415 - PGA1_65p00390 0.49 +0.2 54,601 + PGA1_65p00390 0.65 -1.2 54,631 - PGA1_65p00390 0.67 -0.2 54,633 + PGA1_65p00390 0.67 +1.2 54,641 - PGA1_65p00390 0.68 +2.8 54,668 - PGA1_65p00390 0.70 -0.2
Or see this region's nucleotide sequence