Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04020 and PGA1_c04030 are separated by 126 nucleotides PGA1_c04030 and PGA1_c04040 are separated by 62 nucleotides
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
PGA1_c04030: PGA1_c04030 - phenylacetic acid degradation protein paaA-like protein, at 388,939 to 389,706
_c04030
PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842
_c04040
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 387.971 kb on + strand at 387.973 kb on - strand at 388.147 kb on - strand, within PGA1_c04020 at 388.212 kb on + strand, within PGA1_c04020 at 388.338 kb on + strand, within PGA1_c04020 at 388.373 kb on - strand, within PGA1_c04020 at 388.388 kb on - strand, within PGA1_c04020 at 388.422 kb on - strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.454 kb on - strand, within PGA1_c04020 at 388.502 kb on - strand, within PGA1_c04020 at 388.645 kb on - strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.673 kb on - strand, within PGA1_c04020 at 388.688 kb on - strand, within PGA1_c04020 at 388.917 kb on - strand at 388.922 kb on - strand at 388.969 kb on - strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.033 kb on + strand, within PGA1_c04030 at 389.045 kb on + strand, within PGA1_c04030 at 389.064 kb on + strand, within PGA1_c04030 at 389.071 kb on + strand, within PGA1_c04030 at 389.168 kb on - strand, within PGA1_c04030 at 389.169 kb on - strand, within PGA1_c04030 at 389.194 kb on + strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.323 kb on - strand, within PGA1_c04030 at 389.343 kb on + strand, within PGA1_c04030 at 389.371 kb on + strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.390 kb on - strand, within PGA1_c04030 at 389.401 kb on - strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.456 kb on + strand, within PGA1_c04030 at 389.474 kb on + strand, within PGA1_c04030 at 389.516 kb on + strand, within PGA1_c04030 at 389.562 kb on + strand, within PGA1_c04030 at 389.619 kb on - strand, within PGA1_c04030 at 389.629 kb on - strand, within PGA1_c04030 at 389.648 kb on - strand at 389.717 kb on + strand at 389.723 kb on - strand at 389.725 kb on - strand at 389.806 kb on + strand at 389.819 kb on - strand at 389.820 kb on + strand at 389.820 kb on + strand at 389.826 kb on + strand at 389.828 kb on - strand at 389.828 kb on - strand at 389.828 kb on - strand at 389.833 kb on - strand at 389.834 kb on - strand at 389.882 kb on - strand, within PGA1_c04040 at 389.897 kb on - strand, within PGA1_c04040 at 389.919 kb on + strand, within PGA1_c04040 at 389.919 kb on - strand, within PGA1_c04040 at 389.934 kb on + strand, within PGA1_c04040 at 389.934 kb on + strand, within PGA1_c04040 at 389.942 kb on - strand, within PGA1_c04040 at 389.979 kb on + strand, within PGA1_c04040 at 389.980 kb on + strand, within PGA1_c04040 at 389.987 kb on - strand, within PGA1_c04040 at 389.988 kb on - strand, within PGA1_c04040 at 390.003 kb on + strand, within PGA1_c04040 at 390.011 kb on - strand, within PGA1_c04040 at 390.011 kb on - strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.044 kb on + strand, within PGA1_c04040 at 390.052 kb on - strand, within PGA1_c04040 at 390.070 kb on + strand, within PGA1_c04040 at 390.070 kb on + strand, within PGA1_c04040 at 390.106 kb on + strand, within PGA1_c04040 at 390.114 kb on - strand, within PGA1_c04040 at 390.116 kb on + strand, within PGA1_c04040 at 390.153 kb on + strand, within PGA1_c04040 at 390.161 kb on - strand, within PGA1_c04040 at 390.161 kb on - strand, within PGA1_c04040 at 390.166 kb on - strand, within PGA1_c04040 at 390.171 kb on + strand, within PGA1_c04040 at 390.185 kb on + strand, within PGA1_c04040 at 390.193 kb on - strand, within PGA1_c04040 at 390.196 kb on - strand, within PGA1_c04040 at 390.237 kb on - strand, within PGA1_c04040 at 390.274 kb on + strand, within PGA1_c04040 at 390.274 kb on + strand, within PGA1_c04040 at 390.323 kb on + strand, within PGA1_c04040 at 390.323 kb on + strand, within PGA1_c04040 at 390.331 kb on - strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.345 kb on - strand, within PGA1_c04040 at 390.365 kb on - strand, within PGA1_c04040 at 390.365 kb on - strand, within PGA1_c04040 at 390.374 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.404 kb on + strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.418 kb on - strand, within PGA1_c04040 at 390.438 kb on - strand, within PGA1_c04040 at 390.439 kb on + strand, within PGA1_c04040 at 390.445 kb on + strand, within PGA1_c04040 at 390.445 kb on + strand, within PGA1_c04040 at 390.453 kb on - strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.496 kb on + strand, within PGA1_c04040 at 390.504 kb on - strand, within PGA1_c04040 at 390.597 kb on + strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.651 kb on + strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.681 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.694 kb on - strand, within PGA1_c04040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 387,971 + +0.4 387,973 - +2.0 388,147 - PGA1_c04020 0.23 +1.3 388,212 + PGA1_c04020 0.31 +0.6 388,338 + PGA1_c04020 0.45 +0.1 388,373 - PGA1_c04020 0.49 +0.2 388,388 - PGA1_c04020 0.51 -0.6 388,422 - PGA1_c04020 0.55 +0.6 388,446 + PGA1_c04020 0.58 -0.2 388,446 + PGA1_c04020 0.58 +1.1 388,454 - PGA1_c04020 0.59 +1.5 388,502 - PGA1_c04020 0.64 +0.8 388,645 - PGA1_c04020 0.81 -0.0 388,665 + PGA1_c04020 0.83 -0.4 388,665 + PGA1_c04020 0.83 +0.3 388,665 + PGA1_c04020 0.83 -0.3 388,673 - PGA1_c04020 0.84 -0.6 388,688 - PGA1_c04020 0.86 +0.5 388,917 - -1.1 388,922 - -0.3 388,969 - -1.0 389,013 + +0.9 389,013 + +0.6 389,013 + -0.7 389,021 - PGA1_c04030 0.11 +1.6 389,021 - PGA1_c04030 0.11 +0.7 389,021 - PGA1_c04030 0.11 +0.6 389,033 + PGA1_c04030 0.12 -0.4 389,045 + PGA1_c04030 0.14 +1.4 389,064 + PGA1_c04030 0.16 -0.4 389,071 + PGA1_c04030 0.17 +1.0 389,168 - PGA1_c04030 0.30 +1.7 389,169 - PGA1_c04030 0.30 +0.3 389,194 + PGA1_c04030 0.33 +0.2 389,202 - PGA1_c04030 0.34 +1.2 389,202 - PGA1_c04030 0.34 -1.5 389,323 - PGA1_c04030 0.50 -0.0 389,343 + PGA1_c04030 0.53 -0.3 389,371 + PGA1_c04030 0.56 -2.8 389,379 - PGA1_c04030 0.57 -1.2 389,379 - PGA1_c04030 0.57 +0.7 389,390 - PGA1_c04030 0.59 +1.7 389,401 - PGA1_c04030 0.60 +0.2 389,408 + PGA1_c04030 0.61 -1.3 389,408 + PGA1_c04030 0.61 +0.6 389,408 + PGA1_c04030 0.61 -1.9 389,408 + PGA1_c04030 0.61 -1.3 389,408 + PGA1_c04030 0.61 -2.5 389,408 + PGA1_c04030 0.61 -1.1 389,408 + PGA1_c04030 0.61 -0.0 389,408 + PGA1_c04030 0.61 -0.6 389,408 + PGA1_c04030 0.61 -2.7 389,408 + PGA1_c04030 0.61 +0.7 389,408 + PGA1_c04030 0.61 -1.1 389,408 + PGA1_c04030 0.61 +1.2 389,416 - PGA1_c04030 0.62 +2.1 389,416 - PGA1_c04030 0.62 +1.8 389,416 - PGA1_c04030 0.62 +0.5 389,416 - PGA1_c04030 0.62 +0.7 389,416 - PGA1_c04030 0.62 +1.5 389,416 - PGA1_c04030 0.62 +0.1 389,416 - PGA1_c04030 0.62 +1.2 389,416 - PGA1_c04030 0.62 -0.7 389,416 - PGA1_c04030 0.62 -1.9 389,416 - PGA1_c04030 0.62 -2.9 389,416 - PGA1_c04030 0.62 +0.5 389,416 - PGA1_c04030 0.62 -0.0 389,456 + PGA1_c04030 0.67 +2.8 389,474 + PGA1_c04030 0.70 +1.8 389,516 + PGA1_c04030 0.75 +0.4 389,562 + PGA1_c04030 0.81 +0.2 389,619 - PGA1_c04030 0.89 +0.2 389,629 - PGA1_c04030 0.90 +1.2 389,648 - -2.2 389,717 + -0.3 389,723 - -0.6 389,725 - +0.5 389,806 + -1.0 389,819 - -1.3 389,820 + -0.8 389,820 + -1.2 389,826 + -0.4 389,828 - -1.0 389,828 - +0.3 389,828 - -0.3 389,833 - -0.4 389,834 - -0.1 389,882 - PGA1_c04040 0.11 +1.4 389,897 - PGA1_c04040 0.12 +0.7 389,919 + PGA1_c04040 0.14 -0.5 389,919 - PGA1_c04040 0.14 -0.7 389,934 + PGA1_c04040 0.15 +0.7 389,934 + PGA1_c04040 0.15 -0.1 389,942 - PGA1_c04040 0.16 +0.3 389,979 + PGA1_c04040 0.20 -0.2 389,980 + PGA1_c04040 0.20 +1.4 389,987 - PGA1_c04040 0.20 +1.5 389,988 - PGA1_c04040 0.20 -2.7 390,003 + PGA1_c04040 0.22 -0.5 390,011 - PGA1_c04040 0.23 -0.3 390,011 - PGA1_c04040 0.23 +0.7 390,034 + PGA1_c04040 0.25 -2.5 390,034 + PGA1_c04040 0.25 -1.3 390,034 + PGA1_c04040 0.25 +0.3 390,044 + PGA1_c04040 0.26 -0.7 390,052 - PGA1_c04040 0.26 -0.8 390,070 + PGA1_c04040 0.28 +1.0 390,070 + PGA1_c04040 0.28 +0.1 390,106 + PGA1_c04040 0.31 -0.2 390,114 - PGA1_c04040 0.32 +0.7 390,116 + PGA1_c04040 0.32 +0.2 390,153 + PGA1_c04040 0.36 +0.8 390,161 - PGA1_c04040 0.36 -0.5 390,161 - PGA1_c04040 0.36 +0.4 390,166 - PGA1_c04040 0.37 -0.4 390,171 + PGA1_c04040 0.37 -0.5 390,185 + PGA1_c04040 0.39 -1.1 390,193 - PGA1_c04040 0.39 -1.6 390,196 - PGA1_c04040 0.40 -0.6 390,237 - PGA1_c04040 0.44 -0.7 390,274 + PGA1_c04040 0.47 +0.5 390,274 + PGA1_c04040 0.47 +0.4 390,323 + PGA1_c04040 0.52 -1.0 390,323 + PGA1_c04040 0.52 -2.6 390,331 - PGA1_c04040 0.52 +0.8 390,337 + PGA1_c04040 0.53 +0.0 390,337 + PGA1_c04040 0.53 -0.2 390,337 + PGA1_c04040 0.53 -0.4 390,337 + PGA1_c04040 0.53 -1.3 390,345 - PGA1_c04040 0.54 +0.3 390,365 - PGA1_c04040 0.55 +0.5 390,365 - PGA1_c04040 0.55 +0.4 390,374 + PGA1_c04040 0.56 +0.2 390,400 + PGA1_c04040 0.59 +0.1 390,400 + PGA1_c04040 0.59 +1.6 390,400 + PGA1_c04040 0.59 -2.3 390,400 + PGA1_c04040 0.59 -1.3 390,400 + PGA1_c04040 0.59 -0.5 390,404 + PGA1_c04040 0.59 +0.1 390,408 - PGA1_c04040 0.59 -1.4 390,408 - PGA1_c04040 0.59 +0.6 390,408 - PGA1_c04040 0.59 -0.8 390,408 - PGA1_c04040 0.59 +0.0 390,408 - PGA1_c04040 0.59 -0.3 390,408 - PGA1_c04040 0.59 +0.6 390,418 - PGA1_c04040 0.60 +0.8 390,438 - PGA1_c04040 0.62 -1.5 390,439 + PGA1_c04040 0.62 +0.0 390,445 + PGA1_c04040 0.63 -0.2 390,445 + PGA1_c04040 0.63 +0.0 390,453 - PGA1_c04040 0.64 -1.5 390,461 + PGA1_c04040 0.64 -0.6 390,461 + PGA1_c04040 0.64 -0.0 390,496 + PGA1_c04040 0.68 +0.2 390,504 - PGA1_c04040 0.68 +0.4 390,597 + PGA1_c04040 0.77 -0.5 390,605 - PGA1_c04040 0.78 +0.5 390,605 - PGA1_c04040 0.78 +0.1 390,651 + PGA1_c04040 0.82 -1.0 390,654 - PGA1_c04040 0.82 +1.1 390,654 - PGA1_c04040 0.82 +0.5 390,681 + PGA1_c04040 0.85 +0.0 390,686 + PGA1_c04040 0.85 -0.7 390,686 + PGA1_c04040 0.85 +0.7 390,694 - PGA1_c04040 0.86 +0.0
Or see this region's nucleotide sequence