Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00500

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00490 and PGA1_78p00500 are separated by 119 nucleotidesPGA1_78p00500 and PGA1_78p00510 are separated by 61 nucleotides PGA1_78p00490: PGA1_78p00490 - putative HTH-type transcriptional regulator, at 60,744 to 61,784 _78p00490 PGA1_78p00500: PGA1_78p00500 - putative transcriptional regulator, at 61,904 to 63,124 _78p00500 PGA1_78p00510: PGA1_78p00510 - multidrug transporter MdtB, at 63,186 to 66,329 _78p00510 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 60.945 kb on + strand, within PGA1_78p00490at 60.950 kb on + strand, within PGA1_78p00490at 61.082 kb on - strand, within PGA1_78p00490at 61.599 kb on + strand, within PGA1_78p00490at 61.897 kb on - strandat 61.986 kb on - strandat 62.049 kb on - strand, within PGA1_78p00500at 62.289 kb on - strand, within PGA1_78p00500at 62.289 kb on - strand, within PGA1_78p00500at 62.455 kb on + strand, within PGA1_78p00500at 62.455 kb on + strand, within PGA1_78p00500at 62.985 kb on - strand, within PGA1_78p00500at 63.392 kb on + strandat 63.700 kb on + strand, within PGA1_78p00510at 63.962 kb on + strand, within PGA1_78p00510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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60,945 + PGA1_78p00490 0.19 +2.1
60,950 + PGA1_78p00490 0.20 -0.2
61,082 - PGA1_78p00490 0.32 +2.6
61,599 + PGA1_78p00490 0.82 +1.1
61,897 - +1.4
61,986 - +0.2
62,049 - PGA1_78p00500 0.12 -1.2
62,289 - PGA1_78p00500 0.32 +0.2
62,289 - PGA1_78p00500 0.32 -1.8
62,455 + PGA1_78p00500 0.45 -0.8
62,455 + PGA1_78p00500 0.45 +0.8
62,985 - PGA1_78p00500 0.89 -0.2
63,392 + +1.1
63,700 + PGA1_78p00510 0.16 -1.2
63,962 + PGA1_78p00510 0.25 -0.2

Or see this region's nucleotide sequence